View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17495_low_14 (Length: 301)

Name: NF17495_low_14
Description: NF17495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17495_low_14
NF17495_low_14
[»] chr1 (27 HSPs)
chr1 (159-276)||(5489851-5489968)
chr1 (159-276)||(48498870-48498987)
chr1 (159-276)||(43570994-43571111)
chr1 (159-278)||(4401403-4401522)
chr1 (159-277)||(7447900-7448018)
chr1 (164-277)||(24769406-24769519)
chr1 (159-277)||(750212-750330)
chr1 (159-275)||(37814853-37814969)
chr1 (159-278)||(50448166-50448285)
chr1 (159-279)||(2497467-2497587)
chr1 (161-276)||(23989431-23989546)
chr1 (161-279)||(4888120-4888237)
chr1 (204-277)||(35003414-35003487)
chr1 (125-162)||(43571147-43571184)
chr1 (204-277)||(44112797-44112870)
chr1 (204-276)||(45705945-45706017)
chr1 (185-279)||(7740730-7740825)
chr1 (204-270)||(48119748-48119814)
chr1 (204-276)||(35000021-35000093)
chr1 (204-276)||(45639640-45639712)
chr1 (125-156)||(5489778-5489809)
chr1 (204-287)||(38113092-38113175)
chr1 (204-279)||(41065271-41065346)
chr1 (207-278)||(45427651-45427722)
chr1 (123-156)||(7447826-7447859)
chr1 (204-277)||(26585582-26585655)
chr1 (204-256)||(46168503-46168555)
[»] chr8 (35 HSPs)
chr8 (159-279)||(36743388-36743508)
chr8 (159-275)||(42197344-42197460)
chr8 (159-276)||(2547071-2547188)
chr8 (159-279)||(11582841-11582961)
chr8 (159-271)||(29705437-29705549)
chr8 (159-270)||(29800864-29800975)
chr8 (159-277)||(20148835-20148953)
chr8 (159-276)||(3743846-3743963)
chr8 (159-276)||(9241627-9241744)
chr8 (159-276)||(31384739-31384856)
chr8 (159-278)||(45397391-45397509)
chr8 (159-277)||(30660649-30660767)
chr8 (159-277)||(30912469-30912587)
chr8 (159-275)||(26125710-26125825)
chr8 (159-272)||(2165875-2165988)
chr8 (159-276)||(42295270-42295386)
chr8 (159-253)||(5754978-5755072)
chr8 (161-277)||(1375619-1375735)
chr8 (161-276)||(40528542-40528657)
chr8 (122-162)||(42295194-42295234)
chr8 (204-277)||(34304908-34304980)
chr8 (204-276)||(10678060-10678132)
chr8 (122-158)||(42699256-42699292)
chr8 (125-160)||(28977148-28977183)
chr8 (123-158)||(30912627-30912662)
chr8 (204-278)||(35181636-35181710)
chr8 (204-249)||(18066653-18066698)
chr8 (204-276)||(33629901-33629973)
chr8 (125-156)||(11582768-11582799)
chr8 (125-156)||(36743550-36743581)
chr8 (204-270)||(16358747-16358813)
chr8 (120-158)||(42197500-42197538)
chr8 (125-158)||(29705364-29705397)
chr8 (125-158)||(45397318-45397351)
chr8 (122-162)||(33630054-33630094)
[»] chr3 (40 HSPs)
chr3 (159-278)||(46941128-46941247)
chr3 (159-277)||(42394326-42394444)
chr3 (159-276)||(24688310-24688427)
chr3 (159-276)||(40808940-40809057)
chr3 (159-276)||(54237171-54237288)
chr3 (159-277)||(54246055-54246173)
chr3 (159-276)||(53581766-53581883)
chr3 (159-278)||(52629903-52630022)
chr3 (159-277)||(36150205-36150323)
chr3 (159-277)||(47190933-47191051)
chr3 (159-276)||(40480824-40480941)
chr3 (159-277)||(25413756-25413874)
chr3 (159-276)||(45126836-45126953)
chr3 (159-276)||(42100763-42100880)
chr3 (178-277)||(1078312-1078411)
chr3 (159-276)||(27748638-27748746)
chr3 (159-223)||(51249383-51249447)
chr3 (186-277)||(29556866-29556956)
chr3 (159-277)||(53273600-53273709)
chr3 (204-276)||(9434244-9434316)
chr3 (159-251)||(11064655-11064747)
chr3 (212-266)||(19148896-19148950)
chr3 (125-162)||(42100690-42100727)
chr3 (125-162)||(47191086-47191123)
chr3 (123-162)||(1078227-1078266)
chr3 (125-158)||(25413683-25413716)
chr3 (125-162)||(46941055-46941092)
chr3 (125-158)||(54246213-54246246)
chr3 (204-276)||(51757713-51757784)
chr3 (123-162)||(27748563-27748602)
chr3 (125-156)||(42394486-42394517)
chr3 (125-156)||(54237098-54237129)
chr3 (214-269)||(54429180-54429235)
chr3 (207-252)||(35536650-35536696)
chr3 (188-250)||(45058564-45058626)
chr3 (204-277)||(4190172-4190245)
chr3 (204-277)||(10457799-10457872)
chr3 (125-157)||(24688468-24688500)
chr3 (237-277)||(40488173-40488213)
chr3 (121-157)||(53581924-53581960)
[»] chr6 (25 HSPs)
chr6 (159-277)||(21280004-21280122)
chr6 (159-278)||(21293583-21293702)
chr6 (159-277)||(3213475-3213593)
chr6 (159-277)||(9698240-9698358)
chr6 (159-276)||(24203895-24204012)
chr6 (159-270)||(7292822-7292933)
chr6 (159-277)||(7273242-7273360)
chr6 (159-273)||(7367624-7367738)
chr6 (159-276)||(30736057-30736174)
chr6 (159-270)||(26669923-26670034)
chr6 (159-275)||(13743130-13743246)
chr6 (159-275)||(13748630-13748746)
chr6 (159-275)||(30014418-30014534)
chr6 (159-277)||(26466874-26466992)
chr6 (204-277)||(27441662-27441735)
chr6 (204-276)||(33242523-33242595)
chr6 (125-162)||(26670070-26670107)
chr6 (204-279)||(33254034-33254109)
chr6 (125-159)||(7273399-7273433)
chr6 (125-156)||(9698400-9698431)
chr6 (123-158)||(24204052-24204087)
chr6 (125-156)||(30014345-30014376)
chr6 (125-158)||(26466801-26466834)
chr6 (204-277)||(31109129-31109202)
chr6 (122-158)||(30735981-30736017)
[»] scaffold0038 (2 HSPs)
scaffold0038 (159-277)||(112730-112848)
scaffold0038 (125-156)||(112657-112688)
[»] chr7 (39 HSPs)
chr7 (159-277)||(16180264-16180382)
chr7 (159-279)||(24000917-24001037)
chr7 (159-270)||(5015470-5015581)
chr7 (159-278)||(44416840-44416959)
chr7 (159-277)||(5810831-5810949)
chr7 (159-276)||(32029725-32029842)
chr7 (159-276)||(42538339-42538456)
chr7 (159-276)||(43343532-43343649)
chr7 (159-279)||(42972927-42973047)
chr7 (159-277)||(44326253-44326371)
chr7 (159-273)||(27393171-27393285)
chr7 (159-277)||(45326095-45326213)
chr7 (161-276)||(41861753-41861868)
chr7 (159-276)||(26898310-26898427)
chr7 (159-258)||(38160505-38160604)
chr7 (159-277)||(35069796-35069914)
chr7 (159-276)||(10573824-10573941)
chr7 (159-277)||(9216376-9216494)
chr7 (159-277)||(4638106-4638224)
chr7 (153-277)||(47279631-47279755)
chr7 (159-276)||(43317518-43317635)
chr7 (159-251)||(5194164-5194256)
chr7 (159-245)||(24280535-24280621)
chr7 (204-278)||(40237039-40237113)
chr7 (204-277)||(31408540-31408613)
chr7 (120-162)||(35069718-35069760)
chr7 (125-156)||(24001079-24001110)
chr7 (188-250)||(35522902-35522965)
chr7 (125-156)||(38160661-38160692)
chr7 (125-156)||(42538498-42538529)
chr7 (120-162)||(5194292-5194334)
chr7 (125-158)||(5810989-5811022)
chr7 (125-154)||(9216304-9216333)
chr7 (121-158)||(16180421-16180458)
chr7 (204-277)||(27535138-27535211)
chr7 (125-158)||(41861676-41861709)
chr7 (125-162)||(43317445-43317482)
chr7 (121-157)||(4638265-4638301)
chr7 (207-250)||(46033831-46033875)
[»] chr4 (49 HSPs)
chr4 (159-277)||(28982729-28982847)
chr4 (159-276)||(35017807-35017924)
chr4 (159-277)||(1771173-1771291)
chr4 (159-276)||(27893750-27893867)
chr4 (159-276)||(33703216-33703333)
chr4 (159-278)||(23036055-23036174)
chr4 (159-277)||(27550384-27550502)
chr4 (159-277)||(43735817-43735935)
chr4 (159-276)||(25051768-25051885)
chr4 (159-277)||(55966253-55966371)
chr4 (159-276)||(43514594-43514711)
chr4 (159-287)||(31680977-31681105)
chr4 (159-277)||(27864639-27864757)
chr4 (159-276)||(23204686-23204803)
chr4 (159-276)||(43949709-43949826)
chr4 (159-276)||(51512173-51512290)
chr4 (159-270)||(48463364-48463475)
chr4 (159-276)||(12497031-12497148)
chr4 (159-258)||(39631176-39631275)
chr4 (18-120)||(22435103-22435205)
chr4 (159-280)||(27316616-27316738)
chr4 (159-270)||(45490227-45490338)
chr4 (159-270)||(41848046-41848157)
chr4 (159-277)||(21687081-21687199)
chr4 (162-264)||(46412389-46412491)
chr4 (159-245)||(41878481-41878567)
chr4 (161-278)||(56215804-56215920)
chr4 (159-277)||(28988548-28988665)
chr4 (159-249)||(41327478-41327568)
chr4 (204-277)||(19880074-19880147)
chr4 (204-276)||(55272284-55272356)
chr4 (204-279)||(3756157-3756232)
chr4 (204-275)||(35037125-35037195)
chr4 (122-157)||(43514752-43514787)
chr4 (204-270)||(712080-712146)
chr4 (125-158)||(1771331-1771364)
chr4 (204-277)||(17619059-17619132)
chr4 (125-162)||(28988475-28988512)
chr4 (204-276)||(48435487-48435559)
chr4 (120-158)||(3756311-3756349)
chr4 (219-277)||(32728492-32728550)
chr4 (125-162)||(27316774-27316811)
chr4 (125-158)||(28982887-28982920)
chr4 (125-154)||(35017735-35017764)
chr4 (125-162)||(41878408-41878445)
chr4 (121-162)||(46412520-46412561)
chr4 (204-277)||(46827613-46827686)
chr4 (125-157)||(12496958-12496990)
chr4 (125-157)||(27550311-27550343)
[»] chr2 (40 HSPs)
chr2 (159-277)||(19047232-19047350)
chr2 (159-277)||(30838707-30838825)
chr2 (159-279)||(4764631-4764751)
chr2 (159-275)||(42849768-42849883)
chr2 (8-120)||(43295644-43295757)
chr2 (159-276)||(1750489-1750606)
chr2 (159-277)||(43490308-43490426)
chr2 (159-276)||(43335671-43335788)
chr2 (161-276)||(16096824-16096940)
chr2 (159-278)||(12302159-12302278)
chr2 (159-279)||(39149199-39149317)
chr2 (159-277)||(34817683-34817801)
chr2 (159-271)||(42026844-42026956)
chr2 (159-243)||(13780676-13780760)
chr2 (204-277)||(34895648-34895721)
chr2 (204-276)||(11825562-11825634)
chr2 (204-277)||(6518401-6518474)
chr2 (204-277)||(12531570-12531643)
chr2 (204-277)||(18491825-18491898)
chr2 (204-277)||(41281881-41281954)
chr2 (204-276)||(966742-966814)
chr2 (204-276)||(43114677-43114749)
chr2 (121-156)||(43490468-43490503)
chr2 (125-158)||(1750416-1750449)
chr2 (125-158)||(16096749-16096782)
chr2 (125-158)||(42849911-42849944)
chr2 (159-223)||(8896544-8896608)
chr2 (212-276)||(12415368-12415432)
chr2 (212-276)||(12427428-12427492)
chr2 (204-276)||(16804088-16804160)
chr2 (204-276)||(16843370-16843442)
chr2 (125-156)||(19047159-19047190)
chr2 (188-250)||(42257219-42257282)
chr2 (121-151)||(8896655-8896685)
chr2 (123-156)||(7070416-7070449)
chr2 (125-158)||(12302318-12302351)
chr2 (122-162)||(33229300-33229341)
chr2 (125-162)||(34817837-34817874)
chr2 (204-276)||(4299328-4299400)
chr2 (219-271)||(14285811-14285863)
[»] chr5 (21 HSPs)
chr5 (159-276)||(18034057-18034174)
chr5 (159-279)||(2614554-2614674)
chr5 (159-278)||(5257070-5257189)
chr5 (159-276)||(41334571-41334688)
chr5 (159-279)||(33801544-33801664)
chr5 (178-277)||(25914903-25915002)
chr5 (159-277)||(7617208-7617326)
chr5 (159-251)||(22512380-22512472)
chr5 (159-270)||(38470654-38470765)
chr5 (171-277)||(39122263-39122369)
chr5 (159-251)||(39122366-39122458)
chr5 (204-276)||(30622627-30622699)
chr5 (123-162)||(25915048-25915087)
chr5 (204-275)||(32473303-32473374)
chr5 (125-158)||(33855108-33855141)
chr5 (125-162)||(41334724-41334761)
chr5 (125-157)||(18033984-18034016)
chr5 (125-157)||(22512307-22512339)
chr5 (125-156)||(2614716-2614747)
chr5 (204-279)||(17208194-17208269)
chr5 (125-157)||(7617135-7617167)
[»] scaffold0187 (4 HSPs)
scaffold0187 (159-276)||(14097-14213)
scaffold0187 (159-276)||(24425-24541)
scaffold0187 (125-158)||(14253-14286)
scaffold0187 (125-158)||(24581-24614)
[»] scaffold0385 (1 HSPs)
scaffold0385 (159-276)||(11326-11443)
[»] scaffold0119 (2 HSPs)
scaffold0119 (159-270)||(760-871)
scaffold0119 (125-162)||(687-724)
[»] scaffold0157 (2 HSPs)
scaffold0157 (159-276)||(23329-23446)
scaffold0157 (125-157)||(23487-23519)
[»] scaffold0003 (1 HSPs)
scaffold0003 (204-277)||(45626-45699)
[»] scaffold0100 (1 HSPs)
scaffold0100 (227-271)||(35369-35413)


Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 5489851 - 5489968
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5489851 tcatctcacaaccacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtg 5489950  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  5489951 gtacatgtatcatcactc 5489968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 48498987 - 48498870
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48498987 tcatctcacaaccacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtg 48498888  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  48498887 gtacatgtatcatcactc 48498870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 43571111 - 43570994
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43571111 tcatctcacaaccacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtg 43571012  T
Q  259 gtacatgtatcatcactc 276  Q
    |||||| |||||||||||    
T  43571011 gtacatatatcatcactc 43570994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 159 - 278
Target Start/End: Original strand, 4401403 - 4401522
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| ||||||||||||||| |||||    
T  4401403 tcatctcacaaccacactttatcttctatttgtgtggggtccaatatgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtg 4401502  T
Q  259 gtacatgtatcatcactcta 278  Q
    ||||||||||||||||||||    
T  4401503 gtacatgtatcatcactcta 4401522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 7447900 - 7448018
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||  ||    
T  7447900 tcatctcacaaccacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggaatg 7447999  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  7448000 gtacatgtatcatcactct 7448018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 24769519 - 24769406
Alignment:
Q  164 tcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtaca 263  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||||    
T  24769519 tcacaaccacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaagagtgtattgccacatggggtggtaca 24769420  T
Q  264 tgtatcatcactct 277  Q
    ||||||||||||||    
T  24769419 tgtatcatcactct 24769406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 750330 - 750212
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||| ||||||||||||||||||||||||||||||||||  || ||||||||||||||||| |||||||||||| |||||||||||||||||| ||    
T  750330 tcatctcaaaaccacactttatcttctatttgtgtggggtccatgttaccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgggatg 750231  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  750230 gtacatgtatcatcactct 750212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 37814853 - 37814969
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||    
T  37814853 tcatttcacaaccacactttatcttctatttatgtggggtccagattgccacgtgtcagaattttatatggatgtaaagggtgtattgccacatggggtg 37814952  T
Q  259 gtacatgtatcatcact 275  Q
    |||||||||||| ||||    
T  37814953 gtacatgtatcaccact 37814969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 159 - 278
Target Start/End: Complemental strand, 50448285 - 50448166
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||| ||||||||| |||||||||||||| |||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  50448285 tcatcttacaaccacattttatcttctatttttgtgggttccatgttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtg 50448186  T
Q  259 gtacatgtatcatcactcta 278  Q
    ||||||||||||||||||||    
T  50448185 gtacatgtatcatcactcta 50448166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 159 - 279
Target Start/End: Complemental strand, 2497587 - 2497467
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||| ||||||| |||||| |||| |||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||    
T  2497587 tcatctcacaaccacactttatcatctatttatgtgggatccagattgtcacgtgtcagaattttatgtgggtataaagggtgtattgccacatggtgtg 2497488  T
Q  259 gtacatgtatcatcactctat 279  Q
    |||||||||||| ||||||||    
T  2497487 gtacatgtatcaccactctat 2497467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 23989546 - 23989431
Alignment:
Q  161 atctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggt 260  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||| || |||||||||||| |||||||||||| || |||||||    
T  23989546 atctcacaaccacactttatcttctatttgtgtggggtccaggttgccacatgtcagaatcttgtgtgggtgtaaagggtgtattgccatatagggtggt 23989447  T
Q  261 acatgtatcatcactc 276  Q
    |||||||||| |||||    
T  23989446 acatgtatcaccactc 23989431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 161 - 279
Target Start/End: Original strand, 4888120 - 4888237
Alignment:
Q  161 atctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggt 260  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||| || |||||||||| ||||| |||||| | | ||||||||||| |||||||    
T  4888120 atctcacaaccacactttattttctatttgtgtggtgtccaaattgccatgtatcagaattttgtgtggatgtaaaggatatattgccacat-gggtggt 4888218  T
Q  261 acatgtatcatcactctat 279  Q
    |||||||||||||||||||    
T  4888219 acatgtatcatcactctat 4888237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 35003414 - 35003487
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| ||||| |||||||||||  |||||||||||||||||||  || ||||||||| ||||||    
T  35003414 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtgcatgtatcaccactct 35003487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 43571184 - 43571147
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacctcat 162  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43571184 aaaatgttacatgaacaccctttattcctacacctcat 43571147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 44112797 - 44112870
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||||||||  |  |||||||||||| ||||||    
T  44112797 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgccacatgaaggtgtacatgtatcaccactct 44112870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 45705945 - 45706017
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| |||||| ||||| |||||||||||  ||||||||||||||||| |  |||||||||||| |||||    
T  45705945 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatggaggtgtacatgtatcaccactc 45706017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 7740825 - 7740730
Alignment:
Q  185 tatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatgg-tgtattgccacatggggtggtacatgtatcatcactctat 279  Q
    ||||||||||||||||| || ||||||||||| | |||||||| ||||| ||||| ||||||| |||||  ||| ||  ||||||||| |||||||    
T  7740825 tatttgtgtggggtccacatagccacgtgtcatatttttatgtaggtgtcaatggatgtattgtcacataaggttgtcaatgtatcataactctat 7740730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 48119748 - 48119814
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatca 270  Q
    ||||||| |||||| ||||| |||||||||||  ||||||||||||| |||||  ||||||||||||    
T  48119748 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacgtgggggtgtacatgtatca 48119814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 35000093 - 35000021
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| |||||| ||||| | |||||||||  | |||||||||||||||||  |||||||||||| |||||    
T  35000093 ttgccacatgtcaggattttgtatgggtgtaagagatgtattgccacatgggggtgtacatgtatcaccactc 35000021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 45639712 - 45639640
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| ||| || ||||| |||||||||||  |||||||||||||| ||||  |||||||||||| |||||    
T  45639712 ttgccacatgttaggattttgtgtgggtgtaagaggtgtattgccacaagggggtgtacatgtatcaccactc 45639640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 5489778 - 5489809
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||||||    
T  5489778 aaaatgttacatgaacaccctttattcctaca 5489809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 38113175 - 38113092
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactctatgaattaat 287  Q
    ||||||| |||||| ||||| |||||||||||  ||||||||| ||||||| |  ||||||| |||| |||||| | |||||||    
T  38113175 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgtcacatggaggtgtacatgaatcaccactcttttaattaat 38113092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 41065271 - 41065346
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactctat 279  Q
    ||||||| |||||| ||||| || || |||||  |||||||||||||||||||  |||||| ||||| ||||||||    
T  41065271 ttgccacatgtcaggattttgtgcggatgtaagaggtgtattgccacatgggggtgtacatatatcaccactctat 41065346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 45427722 - 45427651
Alignment:
Q  207 ccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactcta 278  Q
    |||| |||||| ||||| ||||| || ||  |||||||||||||||||||  |||||||||||| |||||||    
T  45427722 ccacatgtcaggattttgtgtggatggaagaggtgtattgccacatggggatgtacatgtatcaccactcta 45427651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 7447826 - 7447859
Alignment:
Q  123 gaaaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||| ||||||||||||||    
T  7447826 gaaaaatgttacatgaacatcctttattcctaca 7447859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 26585582 - 26585655
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| ||||| ||||| |||||  | ||||||||| |||||||  |||||||||||| ||||||    
T  26585582 ttgccacatgtcaggattttgtgtggatgtaagagatgtattgccgcatgggggtgtacatgtatcaccactct 26585655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 46168503 - 46168555
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatgggg 256  Q
    ||||||| ||||| |||||| |||||||||||  | |||||||||||||||||    
T  46168503 ttgccacatgtcataattttgtgtgggtgtaagagatgtattgccacatgggg 46168555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 159 - 279
Target Start/End: Complemental strand, 36743508 - 36743388
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  36743508 tcatctcacaaccacactttatcttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaatggtgtattgccacatggggtg 36743409  T
Q  259 gtacatgtatcatcactctat 279  Q
    |||||||||||||||||||||    
T  36743408 gtacatgtatcatcactctat 36743388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 42197460 - 42197344
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| |||||||||||||||||||||    
T  42197460 tcatctcacaaccacactttatcttctatttgtgtggggtccagattgccacgtgtcaaaattttgtgtgggtgtaaagggtgtattgccacatggggtg 42197361  T
Q  259 gtacatgtatcatcact 275  Q
    |||||||||||||||||    
T  42197360 gtacatgtatcatcact 42197344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 2547071 - 2547188
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| |||||    
T  2547071 tcatctcacaaccacactttatcttctatttgtgtgggatccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtg 2547170  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  2547171 gtacatgtatcatcactc 2547188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 159 - 279
Target Start/End: Original strand, 11582841 - 11582961
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||| ||||    
T  11582841 tcatctcacaaccacactttatcttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtg 11582940  T
Q  259 gtacatgtatcatcactctat 279  Q
    ||||||||||||| |||||||    
T  11582941 gtacatgtatcattactctat 11582961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 29705437 - 29705549
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  29705437 tcatctcacaaccacactttatcttctatttgtgcggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtg 29705536  T
Q  259 gtacatgtatcat 271  Q
    |||||||||||||    
T  29705537 gtacatgtatcat 29705549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 29800975 - 29800864
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  29800975 tcatctcacaaccacactttatcttctatttatgtggggtcaagattgccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtg 29800876  T
Q  259 gtacatgtatca 270  Q
    ||||||||||||    
T  29800875 gtacatgtatca 29800864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 20148835 - 20148953
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  20148835 tcatctcacaaccacactttatcatctatttatgtgggatccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggtgtg 20148934  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||| ||||||    
T  20148935 gtacatgtatcaccactct 20148953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 3743846 - 3743963
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| ||| |||| || |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  3743846 tcatctcacaaccacactttatcttctatttatgtagggttcagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgctacatggggtg 3743945  T
Q  259 gtacatgtatcatcactc 276  Q
    |||||| |||||||||||    
T  3743946 gtacatatatcatcactc 3743963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 9241627 - 9241744
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||    
T  9241627 tcatctcacaaccacactttatcttctatttatgtggggtccaggttgccacgtgtcagaattttgtgtgggtgcaaagggtgtgttgccacatggggtg 9241726  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  9241727 gtacatgtatcatcactc 9241744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 31384739 - 31384856
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| |||||| ||| |||||||||||||||||    
T  31384739 tcatctcacaaccacactttatcttctatttgtgtggggtccaggttgctacgtgtcagaattttatgtggatgtaaagggtatattgccacatggggtg 31384838  T
Q  259 gtacatgtatcatcactc 276  Q
    |||||| |||||||||||    
T  31384839 gtacatatatcatcactc 31384856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 159 - 278
Target Start/End: Original strand, 45397391 - 45397509
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||| |||||    
T  45397391 tcatctcacaaccacaatttatcttctatttgtgtgggctccagattgccacgtgtcagaattttgtgtgggtgtaaagggtgtgttgccacat-gggtg 45397489  T
Q  259 gtacatgtatcatcactcta 278  Q
    ||||||||||||||||||||    
T  45397490 gtacatgtatcatcactcta 45397509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 30660767 - 30660649
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||| ||||||||||||||| || ||    
T  30660767 tcatcttacaaccacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttatgtggatgtaaagggtgtattgccacataggatg 30660668  T
Q  259 gtacatgtatcatcactct 277  Q
     ||||||||||||||||||    
T  30660667 atacatgtatcatcactct 30660649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 30912587 - 30912469
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||| ||| ||||||||||||||||||||||| |  |||||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  30912587 tcatctcacaaccgcaccttatcttctatttgtgtggggtctaggttgccacgtgtcagaattttgtgtgggtgtaaagagtgtattgccacatggggtg 30912488  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  30912487 gtacatgtatcatcactct 30912469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 26125710 - 26125825
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  26125710 tcatctcacaaccacactttatcttctatttatgtggg-tccagattgccacgtgtcagaattttatgcgggtgtaaagggtgtattgccacatggggtg 26125808  T
Q  259 gtacatgtatcatcact 275  Q
    |||||| ||||| ||||    
T  26125809 gtacatatatcaccact 26125825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 2165988 - 2165875
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||| ||||||||||||||||||||||||||||||| ||  |||||||||||||||||||| |||||||||||| ||||||||| |||||||| ||    
T  2165988 tcatctcataaccacactttatcttctatttgtgtggggttcaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgtcacatgggatg 2165889  T
Q  259 gtacatgtatcatc 272  Q
    ||||||||||||||    
T  2165888 gtacatgtatcatc 2165875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 42295270 - 42295386
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| ||||||| |||||||||||| ||||| |||||| ||| ||||||||||| || ||    
T  42295270 tcatctcacaaccacactttatcttctatttatgtggg-tccaagttgccacatgtcagaattttgtgtggatgtaaagggtatattgccacataggatg 42295368  T
Q  259 gtacatgtatcatcactc 276  Q
    |||||| |||||||||||    
T  42295369 gtacatttatcatcactc 42295386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 5754978 - 5755072
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatg 253  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||| |||||||||||| ||||||||||| ||||    
T  5754978 tcatctcacaaccacactttatcttctatttatgtgggatccaagttgccacgtgttagaattttgtgtgggtgtaaagggtgtattgccccatg 5755072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 1375619 - 1375735
Alignment:
Q  161 atctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggt 260  Q
    |||||||||| |||||||||||||||||||||||| || || |||||||||||| ||||| || ||||||||||||   ||||||| ||||| |||||||    
T  1375619 atctcacaactacactttatcttctatttgtgtggagttcagattgccacgtgttagaatcttgtgtgggtgtaaagaatgtattgtcacatagggtggt 1375718  T
Q  261 acatgtatcatcactct 277  Q
    |||||||||| ||||||    
T  1375719 acatgtatcaccactct 1375735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 40528657 - 40528542
Alignment:
Q  161 atctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggt 260  Q
    |||||||||||||||||| ||||||||||||||||||| ||| ||| ||| ||||| |||||| ||||| |||||||| | ||||| |||||| ||  |     
T  40528657 atctcacaaccacactttctcttctatttgtgtggggttcaagttgtcacatgtcataattttgtgtggatgtaaatgatatattgtcacatgagggtgc 40528558  T
Q  261 acatgtatcatcactc 276  Q
    |||||||||| |||||    
T  40528557 acatgtatcaccactc 40528542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 42295194 - 42295234
Alignment:
Q  122 agaaaaatgttacatgaacaccctttattcctacacctcat 162  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42295194 agaaaaatgttacatgaacaccctttattcctacacctcat 42295234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 34304908 - 34304980
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| ||||| | |||||||||  |||||||||||||||||||| |||||||||||| ||||||    
T  34304908 ttgccacatgtcaggattttgtttgggtgtaagaggtgtattgccacatggggt-gtacatgtatcaccactct 34304980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 10678132 - 10678060
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| |||||| ||||| |||||||||||  | |||||||||||||||||  |||||||||||| |||||    
T  10678132 ttgccacatgtcaggattttgtgtgggtgtaagagatgtattgccacatgggggtgtacatgtatcaccactc 10678060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 42699256 - 42699292
Alignment:
Q  122 agaaaaatgttacatgaacaccctttattcctacacc 158  Q
    |||||||||||||||||||||||||||||||||||||    
T  42699256 agaaaaatgttacatgaacaccctttattcctacacc 42699292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 160
Target Start/End: Original strand, 28977148 - 28977183
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacctc 160  Q
    ||||||||||||||||||||||||||||||||||||    
T  28977148 aaaatgttacatgaacaccctttattcctacacctc 28977183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 30912662 - 30912627
Alignment:
Q  123 gaaaaatgttacatgaacaccctttattcctacacc 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  30912662 gaaaaatgttacatgaacaccctttattcctacacc 30912627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 35181636 - 35181710
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactcta 278  Q
    ||||||| |||||| ||||| |||||||||||  ||||||||||||||||  |  |||||||||||| |||||||    
T  35181636 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgaaggtgtacatgtatcaccactcta 35181710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 18066698 - 18066653
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgcca 249  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  18066698 ttgccacatgtcagaattttatgtgggtgtaagaggtgtattgcca 18066653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 33629973 - 33629901
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| ||||| |||||| ||| |||||||  |||||||||||||||||||  |||||| ||||| |||||    
T  33629973 ttgccacatgtcaaaattttgtgtaggtgtaagaggtgtattgccacatgggggtgtacatatatcaccactc 33629901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 11582768 - 11582799
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||||||    
T  11582768 aaaatgttacatgaacaccctttattcctaca 11582799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 156
Target Start/End: Complemental strand, 36743581 - 36743550
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||||||    
T  36743581 aaaatgttacatgaacaccctttattcctaca 36743550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 16358813 - 16358747
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatca 270  Q
    ||||||| |||||  ||||||||||||| |||  |||||||||||| ||||||  ||||||||||||    
T  16358813 ttgccacatgtcatgattttatgtgggtataagaggtgtattgccatatgggggtgtacatgtatca 16358747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 42197538 - 42197500
Alignment:
Q  120 ttagaaaaatgttacatgaacaccctttattcctacacc 158  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  42197538 ttaggaaaatgttacatgaacaccatttattcctacacc 42197500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 29705364 - 29705397
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    |||||||||||||||||||||||||| |||||||    
T  29705364 aaaatgttacatgaacaccctttatttctacacc 29705397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 45397318 - 45397351
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    |||||||||| |||||||||||||||||||||||    
T  45397318 aaaatgttacgtgaacaccctttattcctacacc 45397351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 33630094 - 33630054
Alignment:
Q  122 agaaaaatgttacatgaacaccctttattcctacacctcat 162  Q
    |||||||||||||| |||||||||||| || ||||||||||    
T  33630094 agaaaaatgttacacgaacaccctttaatcatacacctcat 33630054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 159 - 278
Target Start/End: Original strand, 46941128 - 46941247
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  46941128 tcatctcacaaccacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagagtgtattgccacatggggtg 46941227  T
Q  259 gtacatgtatcatcactcta 278  Q
    ||||||||||||||||||||    
T  46941228 gtacatgtatcatcactcta 46941247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 42394444 - 42394326
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | |||||||||| |||||||||||||||||||||    
T  42394444 tcatctcacaaccacactttatcttctatttgtgtggggtccagattgccacgtgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtg 42394345  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  42394344 gtacatgtatcatcactct 42394326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 24688427 - 24688310
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  24688427 tcatctcacaaccacactttatcttctatttatgtggggtccaggttgccacgtgtcagaattttgtgtgggggtaaatggtgtattgccacatggggtg 24688328  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  24688327 gtacatgtatcatcactc 24688310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 40808940 - 40809057
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  40808940 tcatctcacaaccacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtg 40809039  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  40809040 gtacatgtatcatcactc 40809057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 54237171 - 54237288
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || | |||||||||| |||||||||||||||||||||    
T  54237171 tcatctcacaaccacactttatcttctatttgtgtggggtccagattgccacgtgtcagaatattgtatgggtgtaaagggtgtattgccacatggggtg 54237270  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  54237271 gtacatgtatcatcactc 54237288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 54246173 - 54246055
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||   |||||||||||||||||||    
T  54246173 tcatctcacaaccacactttatcttctatttgtgtggggtccaggttgccacatgtcagaattttatgtgggtgtaaagaatgtattgccacatggggtg 54246074  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  54246073 gtacatgtatcatcactct 54246055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 53581883 - 53581766
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||| ||||||||||||||| |||||    
T  53581883 tcatctcacaaccacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtg 53581784  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||| ||||||||||||    
T  53581783 gtacaggtatcatcactc 53581766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 159 - 278
Target Start/End: Original strand, 52629903 - 52630022
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| ||| |||||||  |||| ||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  52629903 tcatctcacaaccacactttatcttctatttatgtagggtccaggttgctacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtg 52630002  T
Q  259 gtacatgtatcatcactcta 278  Q
    ||||||||||||||||||||    
T  52630003 gtacatgtatcatcactcta 52630022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 36150205 - 36150323
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  36150205 tcatctcacaaccacactttatcttctatttgtgtggagtccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtg 36150304  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||| ||||||    
T  36150305 gtacatgtatcaccactct 36150323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 47191051 - 47190933
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||||| |||||||||||||||||  ||    
T  47191051 tcatctcacaaccacactttatcttctatttgtgtggggtccaagttaccacatgtcagaattttgtgtgggtgtaaagggtgtattgccacatggaatg 47190952  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  47190951 gtacatgtatcatcactct 47190933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 40480824 - 40480941
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||| |||||||||||| ||||||||||| |||||||||    
T  40480824 tcatctcacaaccacactttatcttctatttgtgtagggtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccgcatggggtg 40480923  T
Q  259 gtacatgtatcatcactc 276  Q
     |||||||||||||||||    
T  40480924 atacatgtatcatcactc 40480941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 25413756 - 25413874
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||  || |||||||||||| |||| |||||||||||| ||||||||| || ||||||||    
T  25413756 tcatctcacaaccacactttatcttctatttgtgtggggtccaggttaccacgtgtcagagttttgtgtgggtgtaaagggtgtattgtcatatggggtg 25413855  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  25413856 gtacatgtatcatcactct 25413874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 45126953 - 45126836
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||| |||||||| ||||||||||| ||| |||| || |||||||||||||||||||||| ||||||||||||||||| |||    
T  45126953 tcatctcacaaccacactttattttctatttatgtggggtccagattaccacatgccagaattttatgtgggtgtaaagggtgtattgccacatggagtg 45126854  T
Q  259 gtacatgtatcatcactc 276  Q
    |||||||||||| |||||    
T  45126853 gtacatgtatcaccactc 45126836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 42100763 - 42100880
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||| |||||||| ||||||||||| || ||  ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||    
T  42100763 tcatctcacaaccacattttatcttttatttgtgtggagttcaggttgccacgtgtcagaattttatgtgggtgtaaagggtgcattgccacatgaggtg 42100862  T
Q  259 gtacatgtatcatcactc 276  Q
    |||||||||| |||||||    
T  42100863 gtacatgtatgatcactc 42100880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 1078312 - 1078411
Alignment:
Q  178 tatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    |||||||||||||||||| || ||  |||||||||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||    
T  1078312 tatcttctatttgtgtggagttcaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatgaggtggtacatgtatcatcactct 1078411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 27748638 - 27748746
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||| | ||||||||||||||||||||||||||||  ||||||| |||||||||||| |||          |||||||||||||||||||||    
T  27748638 tcatctcacaacaatactttatcttctatttgtgtggggtccaggttgccacatgtcagaattttgtgt---------cggtgtattgccacatggggtg 27748728  T
Q  259 gtacatgtatcatcactc 276  Q
    |||||||||||| |||||    
T  27748729 gtacatgtatcaccactc 27748746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 51249383 - 51249447
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaatttt 223  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||||    
T  51249383 tcatctcacaaccacactttctcttctatttgtgtgggatccagattgccacatgtcagaatttt 51249447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 29556956 - 29556866
Alignment:
Q  186 atttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||||||||| ||  ||||||| ||||||| |||||| ||||||||||| |||||||||||||||  ||||||||||||||| ||||||    
T  29556956 atttgtgtggggttcaggttgccacatgtcaga-ttttatatgggtgtaaattgtgtattgccacatgtagtggtacatgtatcaccactct 29556866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 53273709 - 53273600
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||| |||||||||| ||||| |||||| ||||  || |||||| ||||||||||      |||||   |||||||||||||||||| ||    
T  53273709 tcatctcacaaccatactttatcttttatttatgtgggatccaggttaccacgtatcagaatttt------gtgta---ggtgtattgccacatgggatg 53273619  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  53273618 gtacatgtatcatcactct 53273600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 9434244 - 9434316
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||||||||||   |||||||||||| |||||    
T  9434244 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgccacatgggagtgtacatgtatcaccactc 9434316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 11064747 - 11064655
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccaca 251  Q
    |||||||| || |||||||  |||||||||||||||||||| | ||| |||| ||||| |||||| |||||||||||  ||||||||| ||||    
T  11064747 tcatctcataatcacacttactcttctatttgtgtggggtctagattaccacatgtcaaaattttgtgtgggtgtaaggggtgtattgtcaca 11064655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 19148896 - 19148950
Alignment:
Q  212 tgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgt 266  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||  ||||||||    
T  19148896 tgtcagaattttgtgtgggtgtaagtggtgtattgccacatgggggtgtacatgt 19148950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 42100690 - 42100727
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacctcat 162  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42100690 aaaatgttacatgaacaccctttattcctacacctcat 42100727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 47191123 - 47191086
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacctcat 162  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47191123 aaaatgttacatgaacaccctttattcctacacctcat 47191086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 1078227 - 1078266
Alignment:
Q  123 gaaaaatgttacatgaacaccctttattcctacacctcat 162  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  1078227 gaaaaatgttacatgaacaccctttattcctgcacctcat 1078266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 25413683 - 25413716
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    ||||||||||||||||||||||||||||||||||    
T  25413683 aaaatgttacatgaacaccctttattcctacacc 25413716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 46941055 - 46941092
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacctcat 162  Q
    |||||||||||||||||||||||||||||||| |||||    
T  46941055 aaaatgttacatgaacaccctttattcctacatctcat 46941092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 54246246 - 54246213
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    ||||||||||||||||||||||||||||||||||    
T  54246246 aaaatgttacatgaacaccctttattcctacacc 54246213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 51757713 - 51757784
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| |||||| ||| | |||||||||||  ||| |||||||||||||||| |||||||||||| |||||    
T  51757713 ttgccacatgtcaggattgtgtgtgggtgtaagaggtatattgccacatggggt-gtacatgtatcaccactc 51757784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 27748563 - 27748602
Alignment:
Q  123 gaaaaatgttacatgaacaccctttattcctacacctcat 162  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  27748563 gaaaaatgttacatgaacaccttttattcatacacctcat 27748602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 156
Target Start/End: Complemental strand, 42394517 - 42394486
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||||||    
T  42394517 aaaatgttacatgaacaccctttattcctaca 42394486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 54237098 - 54237129
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||||||    
T  54237098 aaaatgttacatgaacaccctttattcctaca 54237129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 54429235 - 54429180
Alignment:
Q  214 tcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatc 269  Q
    |||||||||| |||||||||||  |||||||||||| ||||||  |||||||||||    
T  54429235 tcagaattttgtgtgggtgtaagaggtgtattgccatatgggggtgtacatgtatc 54429180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 35536696 - 35536650
Alignment:
Q  207 ccacgtgtcagaattttatgtgggtgt-aaatggtgtattgccacat 252  Q
    |||||||||| | |||||||||||||| |||||||||||||||||||    
T  35536696 ccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacat 35536650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 45058564 - 45058626
Alignment:
Q  188 ttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccac 250  Q
    ||||| |||||||| || | ||| ||||||| |||||||||||||| || |||||||||||||    
T  45058564 ttgtgcggggtccatatggtcacatgtcagatttttatgtgggtgtcaagggtgtattgccac 45058626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 4190245 - 4190172
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| ||||| |||||||||||  |||||||||||||||  ||   ||||||||||| ||||||    
T  4190245 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacataagggtatacatgtatcaccactct 4190172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 10457872 - 10457799
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| ||||| ||||| |||||  |||||||||||||||| ||   ||||||||||| ||||||    
T  10457872 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgccacatgagggtatacatgtatcaacactct 10457799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 24688500 - 24688468
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacac 157  Q
    |||||||||||||||||||||||||| ||||||    
T  24688500 aaaatgttacatgaacaccctttatttctacac 24688468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 40488173 - 40488213
Alignment:
Q  237 tggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    |||||||||||||||| || ||||| |||||||||||||||    
T  40488173 tggtgtattgccacataggatggtatatgtatcatcactct 40488213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 53581960 - 53581924
Alignment:
Q  121 tagaaaaatgttacatgaacaccctttattcctacac 157  Q
    |||||||||||||||||||||| |||||||| |||||    
T  53581960 tagaaaaatgttacatgaacactctttattcatacac 53581924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 21280004 - 21280122
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  21280004 tcatctcacaaccacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtatattgccacatggggtg 21280103  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  21280104 gtacatgtatcatcactct 21280122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 159 - 278
Target Start/End: Complemental strand, 21293702 - 21293583
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  21293702 tcatttcacaaccacactttatcttctatttatgtggggtccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatgaggtg 21293603  T
Q  259 gtacatgtatcatcactcta 278  Q
    |||||||||||| |||||||    
T  21293602 gtacatgtatcaccactcta 21293583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 3213475 - 3213593
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3213475 tcatttcacaaccatactttatcttctatttatgtggggtccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtg 3213574  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||| ||||||    
T  3213575 gtacatgtatcaccactct 3213593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 9698358 - 9698240
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||| ||||    
T  9698358 tcatctcacaaccacactttatcttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtg 9698259  T
Q  259 gtacatgtatcatcactct 277  Q
    ||||||||||||| |||||    
T  9698258 gtacatgtatcattactct 9698240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 24204012 - 24203895
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||| ||||||| |||    
T  24204012 tcatctcacaaccacactttatattctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgtcacatggagtg 24203913  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  24203912 gtacatgtatcatcactc 24203895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 7292822 - 7292933
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| | || ||||||| |||||||||||||||||||||    
T  7292822 tcatctcacaaccacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtttgtgtgtaaagggtgtattgccacatggggtg 7292921  T
Q  259 gtacatgtatca 270  Q
    ||||||||||||    
T  7292922 gtacatgtatca 7292933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 7273360 - 7273242
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||  ||||||| ||||||||||||    
T  7273360 tcatctcacaatcacactttatcttctatttatgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagagtgtattaccacatggggtg 7273261  T
Q  259 gtacatgtatcatcactct 277  Q
    ||||||| |||||||||||    
T  7273260 gtacatgcatcatcactct 7273242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 7367624 - 7367738
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  7367624 tcatctcacaaccacactttattttctatttatgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtg 7367723  T
Q  259 gtacatgtatcatca 273  Q
    |||||||||||||||    
T  7367724 gtacatgtatcatca 7367738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 30736057 - 30736174
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||| ||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||    
T  30736057 tcatctcacaatcacactttatcttctatttatgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatgggatg 30736156  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  30736157 gtacatgtatcatcactc 30736174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 26670034 - 26669923
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||    
T  26670034 tcatctcacaaccacactttatcttctatttgtgtggagtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgaggtg 26669935  T
Q  259 gtacatgtatca 270  Q
    |||||| |||||    
T  26669934 gtacatatatca 26669923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 13743246 - 13743130
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || |||||||||||| | | ||||||||||| |||||    
T  13743246 tcatctcacaaccacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaatcttgtgtgggtgtaaaggatatattgccacatagggtg 13743147  T
Q  259 gtacatgtatcatcact 275  Q
    |||||||||||| ||||    
T  13743146 gtacatgtatcaccact 13743130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 13748746 - 13748630
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || |||||||||||| | | ||||||||||| |||||    
T  13748746 tcatctcacaaccacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaatcttgtgtgggtgtaaaggatatattgccacatagggtg 13748647  T
Q  259 gtacatgtatcatcact 275  Q
    |||||||||||| ||||    
T  13748646 gtacatgtatcaccact 13748630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 30014418 - 30014534
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||| |||||||||||||||| | |||||||||| || ||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  30014418 tcatctcacaaccatactttatcttctatttatatggggtccaagttaccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtg 30014517  T
Q  259 gtacatgtatcatcact 275  Q
     ||||||||||||||||    
T  30014518 atacatgtatcatcact 30014534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 26466874 - 26466992
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||| |||||| ||  ||||||||| |||| ||||| | |||||||||| ||||||||||||||| |||||    
T  26466874 tcatctcacaaccacactttatcttctatttgtttggggttcaggttgccacgtatcaggattttgtatgggtgtaaaaggtgtattgccacatagggtg 26466973  T
Q  259 gtacatgtatcatcactct 277  Q
    ||| |||||||||||||||    
T  26466974 gtaaatgtatcatcactct 26466992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 27441662 - 27441735
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| |||||||||||||||||  ||||||||||||||||||   |||||||||||| ||||||    
T  27441662 ttgccacatgtcaggattttatgtgggtgtaagaggtgtattgccacatgggtgtgtacatgtatcaccactct 27441735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 33242523 - 33242595
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| |||||| ||||| |||||||||||  |||||||||||||||||||  |||||||||||| |||||    
T  33242523 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 33242595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 26670107 - 26670070
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacctcat 162  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26670107 aaaatgttacatgaacaccctttattcctacacctcat 26670070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 33254034 - 33254109
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactctat 279  Q
    ||||||| |||| | ||||| ||||||| |||| ||||||||||||||||| |  |||||||||||| ||||||||    
T  33254034 ttgccacatgtccggattttgtgtgggtataaaaggtgtattgccacatggaggtgtacatgtatcaccactctat 33254109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 7273433 - 7273399
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacct 159  Q
    |||||||||||||||||||||||||||||||||||    
T  7273433 aaaatgttacatgaacaccctttattcctacacct 7273399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 156
Target Start/End: Complemental strand, 9698431 - 9698400
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||||||    
T  9698431 aaaatgttacatgaacaccctttattcctaca 9698400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 24204087 - 24204052
Alignment:
Q  123 gaaaaatgttacatgaacaccctttattcctacacc 158  Q
    ||||||||||||||||||||| ||||||||||||||    
T  24204087 gaaaaatgttacatgaacaccatttattcctacacc 24204052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 30014345 - 30014376
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||||||    
T  30014345 aaaatgttacatgaacaccctttattcctaca 30014376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 26466801 - 26466834
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    |||||||||||| |||||||||||||||||||||    
T  26466801 aaaatgttacataaacaccctttattcctacacc 26466834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 31109202 - 31109129
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| ||||| |||||||||||  ||||||||||||||| |||  | |||||| ||| ||||||    
T  31109202 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacataggggtgcacatgtgtcaacactct 31109129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 30735981 - 30736017
Alignment:
Q  122 agaaaaatgttacatgaacaccctttattcctacacc 158  Q
    |||||||||||||||||||||  ||||||||||||||    
T  30735981 agaaaaatgttacatgaacactttttattcctacacc 30736017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 112730 - 112848
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | |||||||||| |||||||||||||||||||||    
T  112730 tcatctcacaaccacactttatcttctatttgtgtggggtccagattgccacgtgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtg 112829  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  112830 gtacatgtatcatcactct 112848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 112657 - 112688
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||||||    
T  112657 aaaatgttacatgaacaccctttattcctaca 112688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 16180382 - 16180264
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  16180382 tcatctcacaaccacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtg 16180283  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  16180282 gtacatgtatcatcactct 16180264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 159 - 279
Target Start/End: Complemental strand, 24001037 - 24000917
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||| ||||    
T  24001037 tcatctcacaaccacactttatcttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtg 24000938  T
Q  259 gtacatgtatcatcactctat 279  Q
    ||||||||||||| |||||||    
T  24000937 gtacatgtatcattactctat 24000917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 5015470 - 5015581
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  5015470 tcatctcacaaccacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgagtgtaaaaggtgtattgccacatggggtg 5015569  T
Q  259 gtacatgtatca 270  Q
    ||||||||||||    
T  5015570 gtacatgtatca 5015581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 159 - 278
Target Start/End: Complemental strand, 44416959 - 44416840
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |||||| |||||||||||||||| ||||    
T  44416959 tcatctcacaaccacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaaatttgtgtggatgtaaaaggtgtattgccacatgaggtg 44416860  T
Q  259 gtacatgtatcatcactcta 278  Q
    ||||||||||||||||||||    
T  44416859 gtacatgtatcatcactcta 44416840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 5810949 - 5810831
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| | |||||||||| |||||||||||||||||||||    
T  5810949 tcatctcacaaccacactttatcttctatttgtgtggggtccaagttgccacatgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtg 5810850  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  5810849 gtacatgtatcatcactct 5810831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 32029842 - 32029725
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  32029842 tcatctaacaaccacactttatcttctatttatgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtg 32029743  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||| ||||    
T  32029742 gtacatgtatcatgactc 32029725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 42538456 - 42538339
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||| ||||    
T  42538456 tcatctcacaaccacactttatcttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtg 42538357  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||| ||||    
T  42538356 gtacatgtatcattactc 42538339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 43343649 - 43343532
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |||||| |||||||||||||||| ||||    
T  43343649 tcatctcacaaccacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaaatttgtgtggatgtaaaaggtgtattgccacatgaggtg 43343550  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  43343549 gtacatgtatcatcactc 43343532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 159 - 279
Target Start/End: Original strand, 42972927 - 42973047
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || |     
T  42972927 tcatctcacaaccacattttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacataggata 42973026  T
Q  259 gtacatgtatcatcactctat 279  Q
    ||||||||||||| |||||||    
T  42973027 gtacatgtatcattactctat 42973047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 44326253 - 44326371
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  44326253 tcatctcacaaccacactttatcatctatttatgtgggatccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggtgtg 44326352  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||| ||||||    
T  44326353 gtacatgtatcaccactct 44326371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 27393285 - 27393171
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| |||||||||||  ||||| | ||||||||||||||||||||||||| | |||||||||||||||||||    
T  27393285 tcatctcacaaccacactttatcttctatttatgtggggtccaggttgcctcatgtcagaattttatgtgggtgtaaaggatgtattgccacatggggtg 27393186  T
Q  259 gtacatgtatcatca 273  Q
    |||||||||||||||    
T  27393185 gtacatgtatcatca 27393171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 45326095 - 45326213
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| | | |||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  45326095 tcatctcacaatcacactttatcttctatttatgtggggtccagactaccacctgtcagaattttatgtgggtgtaaatggtgtattgtcacatggggtg 45326194  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||| ||||||    
T  45326195 gtacatgtatcaccactct 45326213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 161 - 276
Target Start/End: Original strand, 41861753 - 41861868
Alignment:
Q  161 atctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggt 260  Q
    ||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| | |||||||||| ||||||||||||||||| |||||    
T  41861753 atctcacaaccacactttatcttctatttgtatggggtccaggttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatggagtggt 41861852  T
Q  261 acatgtatcatcactc 276  Q
    |||||||||| |||||    
T  41861853 acatgtatcaccactc 41861868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 26898427 - 26898310
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||| ||||||||||||||| ||||||||||||||||||||  || |||||||||||||||||||||||||||||| ||||||||||||||| || ||    
T  26898427 tcatcttacaaccacactttatattctatttgtgtggggtccaggttaccacgtgtcagaattttatgtgggtgtaaaaggtgtattgccacataggatg 26898328  T
Q  259 gtacatgtatcatcactc 276  Q
    |||||||||||| |||||    
T  26898327 gtacatgtatcaccactc 26898310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 38160604 - 38160505
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||  |||||||||||||||||||||    
T  38160604 tcatctcacaactacactttatcttctatttatgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaggggtgtattgccacatggggtg 38160505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 35069796 - 35069914
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||| | |||||| | | ||||||||||| || ||    
T  35069796 tcatctcacaaccacactttatcttctatttatgtgaggtccaagttgccacgtgtcagaattttgtgtagatgtaaaggatatattgccacataggatg 35069895  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  35069896 gtacatgtatcatcactct 35069914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 10573824 - 10573941
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| ||||||||| | |||||||| | ||||||||||||||||||||||| | | ||||| |||||| ||||    
T  10573824 tcatctcacaaccacactttatcttctatttatgtggggtcaagattgccacatatcagaattttatgtgggtgtaaaggatatattgtcacatgcggtg 10573923  T
Q  259 gtacatgtatcatcactc 276  Q
    |||||||||||| |||||    
T  10573924 gtacatgtatcaccactc 10573941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 9216376 - 9216494
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||| |||||||||||||||||||||||  || ||||| | |||||||||||| ||||| |||||| ||||||||| |||||||||||    
T  9216376 tcatctcacaaccacattttatcttctatttgtgtggggtttaagttgccgcatgtcagaattttgtgtggatgtaaaaggtgtattgtcacatggggtg 9216475  T
Q  259 gtacatgtatcatcactct 277  Q
    ||| || ||||||| ||||    
T  9216476 gtatatatatcatccctct 9216494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 4638224 - 4638106
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||| |||||||||||||||||||||||||| |  || |||||||||||||| || | ||| |||||| ||||||||| ||| | |||||    
T  4638224 tcatctcacaaccatactttatcttctatttgtgtggggtctaggttaccacgtgtcagaatcttgtatggatgtaaagggtgtattgtcacgtagggtg 4638125  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||| ||||||    
T  4638124 gtacatgtatcaccactct 4638106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 47279755 - 47279631
Alignment:
Q  153 tacacctcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacat 252  Q
    |||||| ||| |||||||||||||||||||||||||| | | || |||| ||| |||| | |||||||||||||||||| |||| ||||||||| || ||    
T  47279755 tacaccccatgtcacaaccacactttatcttctatttatataggatccagattaccacatatcagaattttatgtgggtataaagggtgtattgtcagat 47279656  T
Q  253 ggggtggtacatgtatcatcactct 277  Q
    ||| |||||||||||||| ||||||    
T  47279655 gggatggtacatgtatcaccactct 47279631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 43317518 - 43317635
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||| |||||||  |||||||||||||||||||| | |||||||| |||||||||||| |||||||||||  ||||||||||||||   ||      
T  43317518 tcatctcacaatcacacttactcttctatttgtgtggggtctagattgccacatgtcagaattttgtgtgggtgtaaggggtgtattgccacacaagggt 43317617  T
Q  259 gtacatgtatcatcactc 276  Q
    |||||||||||| |||||    
T  43317618 gtacatgtatcaccactc 43317635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 5194256 - 5194164
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccaca 251  Q
    ||||||||||| |||||||  |||||||||||||||||||| | |||||||| ||||| |||||| |||||||||||  | ||||||||||||    
T  5194256 tcatctcacaatcacacttactcttctatttgtgtggggtctagattgccacatgtcaaaattttgtgtgggtgtaagggttgtattgccaca 5194164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 24280621 - 24280535
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtatt 245  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| ||||||  | |||||||||| || | ||||||  ||||||||    
T  24280621 tcatctcacaatcacactttctcttctatttgtgtggggtccaagttgccatatatcagaattttgtgcgagtgtaagaggtgtatt 24280535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 40237039 - 40237113
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactcta 278  Q
    ||||||| |||||| ||||| |||||||||||  |||||||||||||||||||  |||||||||||| |||||||    
T  40237039 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactcta 40237113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 31408613 - 31408540
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| |||||||||||||||||  ||||||||| |||||||||  |||||||||||| ||||||    
T  31408613 ttgccacatgtcaggattttatgtgggtgtaagaggtgtattgtcacatgggggtgtacatgtatcaccactct 31408540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 35069718 - 35069760
Alignment:
Q  120 ttagaaaaatgttacatgaacaccctttattcctacacctcat 162  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  35069718 ttaggaaaatgttacatgaacactctttattcctacacctcat 35069760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 156
Target Start/End: Complemental strand, 24001110 - 24001079
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||||||    
T  24001110 aaaatgttacatgaacaccctttattcctaca 24001079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 35522965 - 35522902
Alignment:
Q  188 ttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtg-taaatggtgtattgccac 250  Q
    ||||| ||| |||| || ||||||||||||| |||| |||||||| ||||||||||||||||||    
T  35522965 ttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccac 35522902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 156
Target Start/End: Complemental strand, 38160692 - 38160661
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||||||    
T  38160692 aaaatgttacatgaacaccctttattcctaca 38160661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 156
Target Start/End: Complemental strand, 42538529 - 42538498
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||||||    
T  42538529 aaaatgttacatgaacaccctttattcctaca 42538498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 5194334 - 5194292
Alignment:
Q  120 ttagaaaaatgttacatgaacaccctttattcctacacctcat 162  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||    
T  5194334 ttaggaaaatgttacatgaacaccatttattcatacacctcat 5194292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 5811022 - 5810989
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    |||||||||||||| |||||||||||||||||||    
T  5811022 aaaatgttacatgaccaccctttattcctacacc 5810989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 154
Target Start/End: Original strand, 9216304 - 9216333
Alignment:
Q  125 aaaatgttacatgaacaccctttattccta 154  Q
    ||||||||||||||||||||||||||||||    
T  9216304 aaaatgttacatgaacaccctttattccta 9216333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 16180458 - 16180421
Alignment:
Q  121 tagaaaaatgttacatgaacaccctttattcctacacc 158  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  16180458 tagaaaaatgttacatcaacaccatttattcctacacc 16180421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 27535211 - 27535138
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||||||||| ||||| |||||  | ||||||||||||||| |   ||||||||||| ||||||    
T  27535211 ttgccacatgtcagaattttgtgtggatgtaagagatgtattgccacatggaggaatacatgtatcaccactct 27535138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 41861676 - 41861709
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    ||||||||||||||||||||||||||| ||||||    
T  41861676 aaaatgttacatgaacaccctttattcatacacc 41861709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 43317445 - 43317482
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacctcat 162  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  43317445 aaaatgttacatgaacaccatttattcatacacctcat 43317482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 4638301 - 4638265
Alignment:
Q  121 tagaaaaatgttacatgaacaccctttattcctacac 157  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  4638301 tagaaaaatgttacatgaacaccttttattcatacac 4638265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 46033831 - 46033875
Alignment:
Q  207 ccacgtgtcagaattttatgtgggtg-taaatggtgtattgccac 250  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||    
T  46033831 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 46033875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 28982847 - 28982729
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  28982847 tcatctcacaaccgcactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtg 28982748  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  28982747 gtacatgtatcatcactct 28982729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 35017807 - 35017924
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| | |||||||||||||||||||    
T  35017807 tcatctcacaaccacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaaagatgtattgccacatggggtg 35017906  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  35017907 gtacatgtatcatcactc 35017924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 1771291 - 1771173
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||| |||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||    
T  1771291 tcatctcacaaccacattttatcttctatttatgtggggtccaagttgccacgtctcagaattttgtgtgggtgtaaagggtgtattgccacatggggtg 1771192  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  1771191 gtacatgtatcatcactct 1771173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 27893867 - 27893750
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  27893867 tcatctcacaaccacactttatcttctatttatgtggggtcaagattgccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtg 27893768  T
Q  259 gtacatgtatcatcactc 276  Q
    |||||||||||| |||||    
T  27893767 gtacatgtatcaccactc 27893750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 33703216 - 33703333
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||| |||||||||||| ||||||||    
T  33703216 tcatctcacaaccacactttatcttctatttgtgcgggatccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccatatggggtg 33703315  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  33703316 gtacatgtatcatcactc 33703333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 159 - 278
Target Start/End: Original strand, 23036055 - 23036174
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||| |||||||||||| | ||| |||||||||||||||    
T  23036055 tcatctcacaaccacactttatcttctatttatgtggggtccaggttgccacgtgtcagaattttgtgtgggtgtaaaggatgtgttgccacatggggtg 23036154  T
Q  259 gtacatgtatcatcactcta 278  Q
    ||||||||||||||||||||    
T  23036155 gtacatgtatcatcactcta 23036174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 27550384 - 27550502
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||| |||||||||||||||||||||||| |||||||||||  |||||||||||||||||||| | |||||||||| |||||||||||||||||||||    
T  27550384 tcatcttacaaccacactttatcttctatttatgtggggtccaggttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatggggtg 27550483  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  27550484 gtacatgtatcatcactct 27550502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 43735817 - 43735935
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||| ||||||||||||| |||||||    
T  43735817 tcatctcacaatcacactttatcttctatttgtgtgggatccaagttgtcacgtgtcagaattttatgtggatgtaaagggtgtattgccacgtggggtg 43735916  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  43735917 gtacatgtatcatcactct 43735935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 25051768 - 25051885
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||    
T  25051768 tcatctcacaatcacactttatcttctatttatgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaatgatgtattgccacgtggggtg 25051867  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  25051868 gtacatgtatcatcactc 25051885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 55966371 - 55966253
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||| |||||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||    
T  55966371 tcatctcacaaccacaatttatcttctatttatgtggggtctagattgccacctgtcagaattttatgtgggtgtaaagggtgtattgccacatggagtg 55966272  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||| ||||||    
T  55966271 gtacatgtatcaccactct 55966253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 43514711 - 43514594
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||| ||||||||||||||||||||||| |  |||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||    
T  43514711 tcatctcacaaccacaccttatcttctatttgtgtggggtctaggttgccacgtgtcagaattttttgtggatgtaaagagtgtattgccacatggggtg 43514612  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  43514611 gtacatgtatcatcactc 43514594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 159 - 287
Target Start/End: Original strand, 31680977 - 31681105
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| ||||||||  | ||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||    
T  31680977 tcatctcacaaccacactttatcttctatttatgtggggtttagattgccacgtgtcagaattttatgtaggtgtaaagggtgtattgccacatgggatg 31681076  T
Q  259 gtacatgtatcatcactctatgaattaat 287  Q
     ||||||||||| |||||||  |||||||    
T  31681077 ctacatgtatcaccactctaataattaat 31681105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 27864639 - 27864757
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||| |||||||| |||||||| || ||| |||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  27864639 tcatctcacaaccacactttattttctatttatgtggggttcagattaccacatgtcagaattttatgtggatgtaaagggtgtattgccacatggggtg 27864738  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||| ||||||    
T  27864739 gtacatgtatcaccactct 27864757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 23204803 - 23204686
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||| |||||||||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||||||||||| | | |||||||||||||| ||    
T  23204803 tcatgtcacaaccacactttatcttctatttatgtggggtccaggttgccacatgtcagaattttatgtgggtgtaaaggatatattgccacatgggatg 23204704  T
Q  259 gtacatgtatcatcactc 276  Q
    |||| |||||||||||||    
T  23204703 gtacgtgtatcatcactc 23204686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 43949826 - 43949709
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||| ||| |||||  ||||||||||||||||||| | ||||| |||| |||||||||||| || |||||    
T  43949826 tcatctcacaaccacactttatcttctatttgtgcgggatccaatatgccacgtgtcagaattttgtatgggtataaagggtgtattgccaaatagggtg 43949727  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  43949726 gtacatgtatcatcactc 43949709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 51512290 - 51512173
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||| | |||||||||||||||| |||||||||||||||||  |||||||||||||||||||| ||||||| | || | ||||||||||| |||||||    
T  51512290 tcatcttataaccacactttatcttttatttgtgtggggtccaggttgccacgtgtcagaattttgtgtgggtattaaagatgtattgccacgtggggtg 51512191  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  51512190 gtacatgtatcatcactc 51512173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 48463475 - 48463364
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||| ||||||| |||||||| |||||||| || ||| |||| ||||||||||||||||||||||||| ||||||||||||||| | |||    
T  48463475 tcatctcacaaccatactttattttctatttatgtggggttcagattaccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatagagtg 48463376  T
Q  259 gtacatgtatca 270  Q
    ||||||||||||    
T  48463375 gtacatgtatca 48463364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 12497031 - 12497148
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||| |||| |||||||||||||||||||||||| ||| ||| ||||||||||| |||||||| ||||||||||||  |||||||| |||||||||||    
T  12497031 tcatcttacaatcacactttatcttctatttgtgtgaggttcaatttgccacgtgttagaattttgtgtgggtgtaaaacgtgtattgtcacatggggtg 12497130  T
Q  259 gtacatgtatcatcactc 276  Q
    || |||||||||| ||||    
T  12497131 gtgcatgtatcattactc 12497148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 39631176 - 39631275
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||| |||  || |||||||||||||||| |||||||||||| | ||||||| |||||||||||    
T  39631176 tcatctcacaaccacactttatcttctatttgtgtggggttcaatatgtcacgtgtcagaattttgtgtgggtgtaaaggatgtattgtcacatggggtg 39631275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 22435103 - 22435205
Alignment:
Q  18 gaatatcacgcatgttaccacaatacataggagcttgtcaaagaatgaacctctcatataaaaaagtaatgaacatgaccaaaccattttaaggtatatg 117  Q
    |||||||||||||||||||||||||||||||   | |||||||||||| |||||||||||| |||||||| ||||||||||||||||| |||||||| ||    
T  22435103 gaatatcacgcatgttaccacaatacataggttttggtcaaagaatgagcctctcatataagaaagtaatcaacatgaccaaaccattgtaaggtatgtg 22435202  T
Q  118 aat 120  Q
    |||    
T  22435203 aat 22435205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 159 - 280
Target Start/End: Complemental strand, 27316738 - 27316616
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaa-ttttatgtgggtgtaaatggtgtattgccacatggggt 257  Q
    |||||||| |||||||||||||||||||||| | ||| |||||| |||||||||||||||| |||| ||||| |||||| ||||||||| |||||||| |    
T  27316738 tcatctcataaccacactttatcttctatttatttggagtccaagttgccacgtgtcagaatttttgtgtggatgtaaagggtgtattgtcacatgggat 27316639  T
Q  258 ggtacatgtatcatcactctatg 280  Q
    | || ||||||||||||||||||    
T  27316638 gataaatgtatcatcactctatg 27316616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 45490338 - 45490227
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||  ||| ||||  ||||||||||||||||| || |||||||||||||| | ||||||||||| ||||     
T  45490338 tcatctcacaaccacactttatcttctatttgtacgggatccaggttgccacgtgtcagaatcttgtgtgggtgtaaatgatatattgccacatagggta 45490239  T
Q  259 gtacatgtatca 270  Q
     |||||||||||    
T  45490238 ctacatgtatca 45490227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 41848046 - 41848157
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||| |||||||||||||| ||||||||||||||||||| || |||| ||| ||||||||||||  |||| |||||  |||||||||||||||||||      
T  41848046 tcatcgcacaaccacactttctcttctatttgtgtggggttcagattgtcacatgtcagaattttgcgtggatgtaaggggtgtattgccacatgggggt 41848145  T
Q  259 gtacatgtatca 270  Q
    ||||||||||||    
T  41848146 gtacatgtatca 41848157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 21687081 - 21687199
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||| ||||| |||||||||||||||||| ||| || ||  |||||||||||||||||||| ||||  ||||||   ||||||||||||| || ||    
T  21687081 tcatctcataaccatactttatcttctatttgtctggagttcaggttgccacgtgtcagaattttgtgtgaatgtaaagaatgtattgccacataggttg 21687180  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||| ||||||||||||    
T  21687181 gtacatatatcatcactct 21687199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 46412491 - 46412389
Alignment:
Q  162 tctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggta 261  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||||  || ||||| || || ||||||||    
T  46412491 tctcacaaccacactttatcttctatttatgtggggtttaaattgccacgtgtcagaattttgtgtagatgtaaaaagtatattgtcatatagggtggta 46412392  T
Q  262 cat 264  Q
    |||    
T  46412391 cat 46412389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 41878481 - 41878567
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtatt 245  Q
    |||||||||||||| || || |||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||||  |||||||    
T  41878481 tcatctcacaaccaaaccttctcttctatttgtgtggggtccagattgtcacgtgtcagaattttgtgttggtgtaaagagtgtatt 41878567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 56215920 - 56215804
Alignment:
Q  161 atctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggt 260  Q
    |||||||||||||||||| ||| |||||||||||||||| |  |||| |  |||||||||||| |||||||||||  ||||||| ||||||||| |  ||    
T  56215920 atctcacaaccacactttctct-ctatttgtgtggggtctaggttgctatatgtcagaattttgtgtgggtgtaagaggtgtatggccacatggtggtgt 56215822  T
Q  261 acatgtatcatcactcta 278  Q
    |||||||||| |||||||    
T  56215821 acatgtatcaccactcta 56215804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 28988548 - 28988665
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||| ||||||||||| ||||||||||||||||||||||  ||||||  |||||||||||| | || | ||||  ||||||||| |||||| ||      
T  28988548 tcatctcataaccacactttctcttctatttgtgtggggtccaggttgccatatgtcagaattttgtatgag-gtaaggggtgtattgtcacatgagggt 28988646  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||| ||||||    
T  28988647 gtacatgtatcaccactct 28988665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 41327568 - 41327478
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgcca 249  Q
    |||||||||| ||||||||| ||||| ||||||||||||||||  ||||||| ||| |||||||| |||| ||||||  ||||||||||||    
T  41327568 tcatctcacatccacactttctcttcaatttgtgtggggtccaggttgccacatgttagaattttttgtgagtgtaaggggtgtattgcca 41327478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 19880074 - 19880147
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| ||||| |||||||||||  |||||||||||||||||||  |||||||||||| ||||||    
T  19880074 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactct 19880147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 55272356 - 55272284
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| |||||| ||||| |||||||||||  |||||||||||||||||||  |||||||||||| |||||    
T  55272356 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 55272284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 3756232 - 3756157
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactctat 279  Q
    ||||||| |||||  |||||||||||||||||  | ||||||||||||||||   |||||||||||| ||||||||    
T  3756232 ttgccacatgtcatgattttatgtgggtgtaagagttgtattgccacatgggagtgtacatgtatcaccactctat 3756157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 35037125 - 35037195
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcact 275  Q
    ||||||| |||||| ||||| |||||||||||  ||||||||||||||||| || |||||||||||| ||||    
T  35037125 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatggagt-gtacatgtatcaccact 35037195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 157
Target Start/End: Complemental strand, 43514787 - 43514752
Alignment:
Q  122 agaaaaatgttacatgaacaccctttattcctacac 157  Q
    ||||||||||||||||||||||||||||||||||||    
T  43514787 agaaaaatgttacatgaacaccctttattcctacac 43514752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 712080 - 712146
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatca 270  Q
    ||||||| |||||| ||||| |||||||||||  ||||||||||||||||| |  ||||||||||||    
T  712080 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatggaggtgtacatgtatca 712146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 1771364 - 1771331
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    ||||||||||||||||||||||||||||||||||    
T  1771364 aaaatgttacatgaacaccctttattcctacacc 1771331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 17619132 - 17619059
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| ||||| |||||||||||  ||||||||||||  |||||  |||||||||||| ||||||    
T  17619132 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccaggtggggatgtacatgtatcaccactct 17619059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 28988475 - 28988512
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacctcat 162  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  28988475 aaaatgttacatgaacaccctttattcatacacctcat 28988512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 48435559 - 48435487
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| |||||| ||||| |||||||||||  | ||||||| |||||||||  |||||||||||| |||||    
T  48435559 ttgccacatgtcaggattttgtgtgggtgtaagagatgtattgtcacatgggggtgtacatgtatcaccactc 48435487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 3756349 - 3756311
Alignment:
Q  120 ttagaaaaatgttacatgaacaccctttattcctacacc 158  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  3756349 ttagaaaaatgttacatgaacaccctttaatcatacacc 3756311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 32728492 - 32728550
Alignment:
Q  219 attttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||| |||| ||||||  |||||||||||||||||||  |||||||||||| ||||||    
T  32728492 attttttgtgcgtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactct 32728550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 27316811 - 27316774
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacctcat 162  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  27316811 aaaatgttaaacgaacaccctttattcctacacctcat 27316774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 28982920 - 28982887
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    |||||||||||||||||||||||||| |||||||    
T  28982920 aaaatgttacatgaacaccctttatttctacacc 28982887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 154
Target Start/End: Original strand, 35017735 - 35017764
Alignment:
Q  125 aaaatgttacatgaacaccctttattccta 154  Q
    ||||||||||||||||||||||||||||||    
T  35017735 aaaatgttacatgaacaccctttattccta 35017764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 41878408 - 41878445
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacctcat 162  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  41878408 aaaatgttacatgaacactctttattcatacacctcat 41878445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 46412561 - 46412520
Alignment:
Q  121 tagaaaaatgttacatgaacaccctttattcctacacctcat 162  Q
    |||||||||||||| |||||||| ||||||||||||| ||||    
T  46412561 tagaaaaatgttacgtgaacaccttttattcctacacttcat 46412520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 46827686 - 46827613
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| ||||| |||||||||||  | |||||| |||||||| |  |||||||||||| ||||||    
T  46827686 ttgccacatgtcaggattttgtgtgggtgtaagagatgtatttccacatggaggtgtacatgtatcaccactct 46827613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 12496958 - 12496990
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacac 157  Q
    ||||||||| |||||||||||||||||||||||    
T  12496958 aaaatgttatatgaacaccctttattcctacac 12496990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 27550311 - 27550343
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacac 157  Q
    |||||||||||||||||||||||||| ||||||    
T  27550311 aaaatgttacatgaacaccctttatttctacac 27550343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 19047232 - 19047350
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | |||||||||| |||||||||||||||||||||    
T  19047232 tcatctcacaaccacactttatcttctatttgtgtggggtccagattgccacgtgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtg 19047331  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  19047332 gtacatgtatcatcactct 19047350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 30838707 - 30838825
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||    
T  30838707 tcatctcacaaccacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtaggtgtaaaaggtgtattgccacatggggtg 30838806  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  30838807 gtacatgtatcatcactct 30838825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 159 - 279
Target Start/End: Complemental strand, 4764751 - 4764631
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||    
T  4764751 tcatctcacaaccacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatgaggtg 4764652  T
Q  259 gtacatgtatcatcactctat 279  Q
    |||||||||||||||||||||    
T  4764651 gtacatgtatcatcactctat 4764631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 42849883 - 42849768
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  42849883 tcatctcacaaccacactttat-ttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtg 42849785  T
Q  259 gtacatgtatcatcact 275  Q
    |||||||||||||||||    
T  42849784 gtacatgtatcatcact 42849768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 43295757 - 43295644
Alignment:
Q  8 cgagtgagatgaatatcacgcatgttaccacaatacataggagcttgtcaaa-gaatgaacctctcatataaaaaagtaatgaacatgaccaaaccattt 106  Q
    |||||||  |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43295757 cgagtgatttgaatatcacgcatgttaccacaatacataggagctggtcaaaagaatgaacctctcatataaaaaagtaatgaacatgaccaaaccattt 43295658  T
Q  107 taaggtatatgaat 120  Q
    ||||||||||||||    
T  43295657 taaggtatatgaat 43295644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 1750489 - 1750606
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||| |||||||||||||||    
T  1750489 tcatctcacaaccacactttatcttctatttgtgtggggtccagattgccacgtgtcagaattttgtgtgagtgtaaagggtgtgttgccacatggggtg 1750588  T
Q  259 gtacatgtatcatcactc 276  Q
    |||||  |||||||||||    
T  1750589 gtacaaatatcatcactc 1750606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 43490426 - 43490308
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||| ||||    
T  43490426 tcatctcataaccacactttatcttctatttatgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtg 43490327  T
Q  259 gtacatgtatcatcactct 277  Q
    ||||||||| |||||||||    
T  43490326 gtacatgtagcatcactct 43490308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 43335788 - 43335671
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||| |||||||||||||||||| |||||| ||||  |||||||||||||||||||| ||||| |||||| ||| |||||||||||||||||    
T  43335788 tcatctcacaactacactttatcttctatttatgtgggatccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtatattgccacatggggtg 43335689  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  43335688 gtacatgtatcatcactc 43335671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 161 - 276
Target Start/End: Original strand, 16096824 - 16096940
Alignment:
Q  161 atctcacaaccacactttatcttctatttgtgtgggg-tccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtgg 259  Q
    |||||||||||||||||||||||||| || ||||||| || || |||||||||||||||||||| |||||||||||| ||||||||||||||||  ||||    
T  16096824 atctcacaaccacactttatcttctacttatgtgggggtctaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgatgtgg 16096923  T
Q  260 tacatgtatcatcactc 276  Q
    |||||||||||||||||    
T  16096924 tacatgtatcatcactc 16096940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 159 - 278
Target Start/End: Complemental strand, 12302278 - 12302159
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| |||||||||||  || ||| ||||||||||||| ||||| |||||| | |||||||||||||||||||    
T  12302278 tcatctcacaaccacactttatcttctatttatgtggggtccaggttaccatgtgtcagaattttgtgtggatgtaaaggatgtattgccacatggggtg 12302179  T
Q  259 gtacatgtatcatcactcta 278  Q
     ||||||||||||| |||||    
T  12302178 atacatgtatcatcgctcta 12302159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 159 - 279
Target Start/End: Complemental strand, 39149317 - 39149199
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||| |||||| |||||||||||| |||||||||||| || ||||| |||||| ||| |||||| |||||||||||| |||||||| |||||| |||||    
T  39149317 tcatcccacaactacactttatcttttatttgtgtggg-tctaaattaccacgtctcataattttgtgtgggtgtaaaaggtgtattaccacat-gggtg 39149220  T
Q  259 gtacatgtatcatcactctat 279  Q
    |||||||||||||||||||||    
T  39149219 gtacatgtatcatcactctat 39149199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 34817801 - 34817683
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||| ||||||||||||  ||| ||||  ||||||| |||||||||||| | |||||||||  || | ||||||||||||||      
T  34817801 tcatctcacaaccacactttctcttctatttgtacgggatccaggttgccacatgtcagaattttgtatgggtgtaaggggagcattgccacatgggggt 34817702  T
Q  259 gtacatgtatcatcactct 277  Q
    |||||||||||||||||||    
T  34817701 gtacatgtatcatcactct 34817683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 42026844 - 42026956
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||| ||||||| | |||||||||||||||||| |  |||| |  |||||||||||| |||||||||||  ||||||||||||||||| |      
T  42026844 tcatctcacaactacactttcttttctatttgtgtggggtctaggttgcaagatgtcagaattttgtgtgggtgtaaggggtgtattgccacatggaggt 42026943  T
Q  259 gtacatgtatcat 271  Q
    |||||||||||||    
T  42026944 gtacatgtatcat 42026956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 13780760 - 13780676
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgta 243  Q
    |||||||||||||||||||| |||||||||| |||||||||||  ||||||| |||||||||||| | | |||||||| ||||||    
T  13780760 tcatctcacaaccacactttctcttctatttatgtggggtccaggttgccacatgtcagaattttgtataggtgtaaagggtgta 13780676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 34895721 - 34895648
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| ||||| |||||||||||  |||||||||||||||||||  |||||||||||| ||||||    
T  34895721 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactct 34895648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 11825634 - 11825562
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| |||||| ||||| |||||||||||  |||||||||||||||||||  |||||||||||| |||||    
T  11825634 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatggggatgtacatgtatcaccactc 11825562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 6518474 - 6518401
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| ||||| |||||||||||| ||||||||| ||||||| |  |||||||||||| ||||||    
T  6518474 ttgccacatgtcaggattttgtgtgggtgtaaaaggtgtattgacacatggaggtgtacatgtatcaccactct 6518401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 12531643 - 12531570
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| ||||| |||||||||||  |||||||||||| |||| |  |||||||||||||||||||    
T  12531643 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccatatggaggtgtacatgtatcatcactct 12531570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 18491825 - 18491898
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| ||| || ||||| |||||||||||  |||||||||||||||||||  |||||||||||| ||||||    
T  18491825 ttgccacatgttaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactct 18491898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 41281954 - 41281881
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| ||||| |||||||||||  |||||||||||| ||||||  |||||||||||| ||||||    
T  41281954 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccatatgggggtgtacatgtatcaccactct 41281881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 966814 - 966742
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| |||||| ||||| |||||||||||  |||||||| ||||||||||  |||||||||||| |||||    
T  966814 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtatttccacatggggatgtacatgtatcaccactc 966742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 43114677 - 43114749
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| |||||| ||||| |||||||||||  |||||||||||||||| ||  |||||||||||| |||||    
T  43114677 ttgccacttgtcaggattttgtgtgggtgtaagaggtgtattgccacatgagggtgtacatgtatcaccactc 43114749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 43490503 - 43490468
Alignment:
Q  121 tagaaaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||||||||||    
T  43490503 tagaaaaatgttacatgaacaccctttattcctaca 43490468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 1750416 - 1750449
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    ||||||||||||||||||||||||||||||||||    
T  1750416 aaaatgttacatgaacaccctttattcctacacc 1750449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 16096749 - 16096782
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    ||||||||||||||||||||||||||||||||||    
T  16096749 aaaatgttacatgaacaccctttattcctacacc 16096782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 42849944 - 42849911
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    ||||||||||||||||||||||||||||||||||    
T  42849944 aaaatgttacatgaacaccctttattcctacacc 42849911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 8896608 - 8896544
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaatttt 223  Q
    ||||||||||| |||||||| | ||||||||||||| ||| ||  ||||||| ||||||||||||    
T  8896608 tcatctcacaatcacactttcttttctatttgtgtgaggttcaggttgccacatgtcagaatttt 8896544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 12415432 - 12415368
Alignment:
Q  212 tgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    |||||||||||| ||||| |||||  ||||||||||||||||||   |||||||||||| |||||    
T  12415432 tgtcagaattttgtgtggatgtaagaggtgtattgccacatgggagtgtacatgtatcaccactc 12415368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 12427492 - 12427428
Alignment:
Q  212 tgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    |||||||||||| ||||| |||||  ||||||||||||||||||   |||||||||||| |||||    
T  12427492 tgtcagaattttgtgtggatgtaagaggtgtattgccacatgggagtgtacatgtatcaccactc 12427428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 16804088 - 16804160
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| |||||||||||| |||||||||||  ||||||||| || || |||  |||||||||||| |||||    
T  16804088 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgtcatataggggtgtacatgtatcaccactc 16804160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 16843370 - 16843442
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| |||||||||||| |||||||||||  ||||||||| || || |||  |||||||||||| |||||    
T  16843370 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgtcatataggggtgtacatgtatcaccactc 16843442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 19047159 - 19047190
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||||||    
T  19047159 aaaatgttacatgaacaccctttattcctaca 19047190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 42257282 - 42257219
Alignment:
Q  188 ttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgt-aaatggtgtattgccac 250  Q
    ||||| ||||||||  | ||||||||||||| |||||||||||||| ||||| |||||||||||    
T  42257282 ttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccac 42257219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 151
Target Start/End: Complemental strand, 8896685 - 8896655
Alignment:
Q  121 tagaaaaatgttacatgaacaccctttattc 151  Q
    |||||||||||||||||||||||||||||||    
T  8896685 tagaaaaatgttacatgaacaccctttattc 8896655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 7070416 - 7070449
Alignment:
Q  123 gaaaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||| ||||    
T  7070416 gaaaaatgttacatgaacaccctttattcataca 7070449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 12302351 - 12302318
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    |||||||||||||||||||||||||| |||||||    
T  12302351 aaaatgttacatgaacaccctttatttctacacc 12302318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 33229300 - 33229341
Alignment:
Q  122 agaaaaatgttacatgaacaccc-tttattcctacacctcat 162  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  33229300 agaaaaatgatacatgaacacccttttattcctacacctcat 33229341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 34817874 - 34817837
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacctcat 162  Q
    |||||||||||||||||||||||||||  |||||||||    
T  34817874 aaaatgttacatgaacaccctttattcacacacctcat 34817837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 4299400 - 4299328
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| |||||| ||||| |||||||||||  | ||||||||||||||  |  |||||||||||| |||||    
T  4299400 ttgccacatgtcaggattttgtgtgggtgtaagagatgtattgccacatgaaggtgtacatgtatcaccactc 4299328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 14285811 - 14285863
Alignment:
Q  219 attttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcat 271  Q
    |||||||||||||||||  ||||||||| ||||| |||  |||||||||||||    
T  14285811 attttatgtgggtgtaagaggtgtattgtcacataggggtgtacatgtatcat 14285863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 18034057 - 18034174
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||| |||||||||||| ||||||||    
T  18034057 tcatctcacaaccacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttatatgggtgtaaagggtgtattgccatatggggtg 18034156  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  18034157 gtacatgtatcatcactc 18034174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 159 - 279
Target Start/End: Complemental strand, 2614674 - 2614554
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||| ||||    
T  2614674 tcatctcacaaccacactttatcttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtg 2614575  T
Q  259 gtacatgtatcatcactctat 279  Q
    ||||||||||||| |||||||    
T  2614574 gtacatgtatcattactctat 2614554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 159 - 278
Target Start/End: Original strand, 5257070 - 5257189
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  5257070 tcatctcacaaccacactttatcttctatttatgtggggtcaagattgccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtg 5257169  T
Q  259 gtacatgtatcatcactcta 278  Q
    |||||||||||| |||||||    
T  5257170 gtacatgtatcaccactcta 5257189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 41334688 - 41334571
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| | |||||||||| |||||||||||||||||||||    
T  41334688 tcatctcacaaccacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatggggtg 41334589  T
Q  259 gtacatgtatcatcactc 276  Q
    |||||||||||| |||||    
T  41334588 gtacatgtatcaccactc 41334571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 159 - 279
Target Start/End: Original strand, 33801544 - 33801664
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||  |||||||||||||||||  |    
T  33801544 tcatctcacaaccacactttatcttctatttgtgtgggatccaagttgccacgtgtcagaattttgtgtgggtgtaaagagtgtattgccacatgggaag 33801643  T
Q  259 gtacatgtatcatcactctat 279  Q
    |||||| ||||||||||||||    
T  33801644 gtacatatatcatcactctat 33801664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 178 - 277
Target Start/End: Complemental strand, 25915002 - 25914903
Alignment:
Q  178 tatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25915002 tatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 25914903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 7617208 - 7617326
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||| |||||| || || ||| ||| |||||||||||| ||| |||||||| |||||||||||||||||||||    
T  7617208 tcatctcacaaccacactttatcttctatttatgtgggatctaagttgtcacatgtcagaattttgtgttggtgtaaaaggtgtattgccacatggggtg 7617307  T
Q  259 gtacatgtatcatcactct 277  Q
     ||||||||||||||||||    
T  7617308 atacatgtatcatcactct 7617326  T

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Target: chr5; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 22512380 - 22512472
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccaca 251  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||||||    
T  22512380 tcatctcacaaccacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccaca 22512472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 38470654 - 38470765
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||| |||||| ||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||||||||||||||| |||||||||||| ||| ||||    
T  38470654 tcatttcacaatcacactttatcttctatttatgtggggtccagattaccacgtatcagaattttatgtgggtgtaaagggtgtattgccatatgaggtg 38470753  T
Q  259 gtacatgtatca 270  Q
    ||||||||||||    
T  38470754 gtacatgtatca 38470765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 39122369 - 39122263
Alignment:
Q  171 cacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatca 270  Q
    ||||||||||||||||||||||||||||  |  ||||||| ||||||||| || ||||| |||||||| | ||||| |||||||||||||||||||||||    
T  39122369 cacactttatcttctatttgtgtggggtttaggttgccacatgtcagaatcttgtgtggatgtaaatgatatattgtcacatggggtggtacatgtatca 39122270  T
Q  271 tcactct 277  Q
     ||||||    
T  39122269 ccactct 39122263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 39122458 - 39122366
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccaca 251  Q
    |||||||||||| |||||||||||||||||||||||||||  |  ||||||| ||||||||| || ||||| |||||||| | ||||| ||||    
T  39122458 tcatctcacaactacactttatcttctatttgtgtggggtttaggttgccacatgtcagaatcttgtgtggatgtaaatgatatattgtcaca 39122366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 30622699 - 30622627
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactc 276  Q
    ||||||| ||||| |||||| |||||||||||  |||||||||||||||||||  |||||||||||| |||||    
T  30622699 ttgccacatgtcaaaattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 30622627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 25915087 - 25915048
Alignment:
Q  123 gaaaaatgttacatgaacaccctttattcctacacctcat 162  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25915087 gaaaaatgttacatgaacaccctttattcctacacctcat 25915048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 32473374 - 32473303
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcact 275  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||||||||| |  |||||||||||| ||||    
T  32473374 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgccacatggaggtgtacatgtatcaccact 32473303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 33855141 - 33855108
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    ||||||||||||||||||||||||||||||||||    
T  33855141 aaaatgttacatgaacaccctttattcctacacc 33855108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 41334761 - 41334724
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacctcat 162  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  41334761 aaaatgttacatgaacaccctttattcatacacctcat 41334724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 18033984 - 18034016
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacac 157  Q
    |||||||||||||||||||||||||||||||||    
T  18033984 aaaatgttacatgaacaccctttattcctacac 18034016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 22512307 - 22512339
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacac 157  Q
    |||||||||||||||||||||||||||||||||    
T  22512307 aaaatgttacatgaacaccctttattcctacac 22512339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 156
Target Start/End: Complemental strand, 2614747 - 2614716
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctaca 156  Q
    ||||||||||||||||||||||||||||||||    
T  2614747 aaaatgttacatgaacaccctttattcctaca 2614716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 17208194 - 17208269
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactctat 279  Q
    ||||||| |||||| ||||| ||||| |||||  ||||||||| ||||| |||  ||||||||||||||| |||||    
T  17208194 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacataggggtgtacatgtatcatcagtctat 17208269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 7617135 - 7617167
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacac 157  Q
    ||||||||||||||||||||||||||| |||||    
T  7617135 aaaatgttacatgaacaccctttattcatacac 7617167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 14213 - 14097
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  14213 tcatctcacaaccacactttatcttctatttgtgtggg-tccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtg 14115  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  14114 gtacatgtatcatcactc 14097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 24541 - 24425
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  24541 tcatctcacaaccacactttatcttctatttgtgtggg-tccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtg 24443  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  24442 gtacatgtatcatcactc 24425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 14286 - 14253
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    |||||||||||||||||||||||||| |||||||    
T  14286 aaaatgttacatgaacaccctttatttctacacc 14253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 24614 - 24581
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacc 158  Q
    |||||||||||||||||||||||||| |||||||    
T  24614 aaaatgttacatgaacaccctttatttctacacc 24581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 11326 - 11443
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||  |||||||||||| |||| ||||||||||||||| ||| ||||||||| ||||||||||||||||| ||    
T  11326 tcatctcacaaccacactttatcttctattgatgtggggtccaagttgctacgtgtcagaattttgtgtaggtgtaaatagtgtattgccacatgggatg 11425  T
Q  259 gtacatgtatcatcactc 276  Q
    ||||||||||||||||||    
T  11426 gtacatgtatcatcactc 11443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 760 - 871
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||    
T  760 tcatctcacaaccacactttatcttctatttgtgtggagtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgaggtg 859  T
Q  259 gtacatgtatca 270  Q
    |||||| |||||    
T  860 gtacatatatca 871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 687 - 724
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacacctcat 162  Q
    ||||||||||||||||||||||||||||||||||||||    
T  687 aaaatgttacatgaacaccctttattcctacacctcat 724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 23446 - 23329
Alignment:
Q  159 tcatctcacaaccacactttatcttctatttgtgtggggtccaaattgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtg 258  Q
    |||||| |||| |||||||||||||||||||||||| ||| ||| ||||||||||| |||||||| ||||||||||||  |||||||| |||||||||||    
T  23446 tcatcttacaatcacactttatcttctatttgtgtgaggttcaatttgccacgtgttagaattttgtgtgggtgtaaaacgtgtattgtcacatggggtg 23347  T
Q  259 gtacatgtatcatcactc 276  Q
    || |||||||||| ||||    
T  23346 gtgcatgtatcattactc 23329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 23519 - 23487
Alignment:
Q  125 aaaatgttacatgaacaccctttattcctacac 157  Q
    ||||||||| |||||||||||||||||||||||    
T  23519 aaaatgttatatgaacaccctttattcctacac 23487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 45699 - 45626
Alignment:
Q  204 ttgccacgtgtcagaattttatgtgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 277  Q
    ||||||| |||||| |||||||||||||||||  ||||||||||||||||||   |||||||||||| ||||||    
T  45699 ttgccacatgtcaggattttatgtgggtgtaagaggtgtattgccacatgggtgtgtacatgtatcaccactct 45626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 35413 - 35369
Alignment:
Q  227 tgggtgtaaatggtgtattgccacatggggtggtacatgtatcat 271  Q
    |||||||||  |||||||||||||||||||  |||||||||||||    
T  35413 tgggtgtaagaggtgtattgccacatgggggtgtacatgtatcat 35369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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