View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17495_low_16 (Length: 232)

Name: NF17495_low_16
Description: NF17495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17495_low_16
NF17495_low_16
[»] chr7 (3 HSPs)
chr7 (1-100)||(34293369-34293468)
chr7 (1-100)||(32979455-32979554)
chr7 (12-99)||(10365992-10366078)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-99)||(270547-270645)
[»] chr3 (2 HSPs)
chr3 (12-99)||(11387658-11387745)
chr3 (18-99)||(46742734-46742815)
[»] chr1 (3 HSPs)
chr1 (1-99)||(47896880-47896978)
chr1 (1-99)||(8039422-8039520)
chr1 (18-99)||(27786548-27786629)
[»] scaffold0725 (1 HSPs)
scaffold0725 (1-100)||(1297-1396)
[»] scaffold0088 (1 HSPs)
scaffold0088 (1-100)||(27213-27312)
[»] chr8 (2 HSPs)
chr8 (1-99)||(38499409-38499507)
chr8 (1-99)||(10182276-10182373)
[»] chr2 (1 HSPs)
chr2 (18-99)||(1533485-1533566)
[»] chr6 (2 HSPs)
chr6 (1-100)||(9566998-9567098)
chr6 (34-99)||(11366920-11366985)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 34293369 - 34293468
Alignment:
Q  1 ttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactta 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||    
T  34293369 ttggcgttgatagaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgctgttttggtggatcggtggagagaagagactgactta 34293468  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 32979554 - 32979455
Alignment:
Q  1 ttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactta 100  Q
    |||||| ||| || || |||||||||||||||| |||||||| |||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||    
T  32979554 ttggcggtgataggaggtgaaggtggtgatgacatggtggttgtgcagtggtggcgacgatgctgttttggtggatcggtggagagaagagtctgactta 32979455  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 10366078 - 10365992
Alignment:
Q  12 agaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactt 99  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||||  ||| || ||||||||||||||||||||| |||||||||||    
T  10366078 agaaggtgaaggtggtgatgacgcggaggttttgcaatggtgtcgatgatgctg-tttggtggatcggtggagagaagagtctgactt 10365992  T

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Target: scaffold0005 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 270645 - 270547
Alignment:
Q  1 ttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactt 99  Q
    |||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||| |||||||||||    
T  270645 ttggcgatgatagaaggtgaaggtggtgatgacgtggtggttttgcagtggtgtcgacgatactgttttggtggatcggtggagagaagagtctgactt 270547  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 11387745 - 11387658
Alignment:
Q  12 agaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactt 99  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||    
T  11387745 agaaggtgaaggtgatgatgacgtggtggttttgcagtggtgtcgactatgctgttttggtggatcggtggagagaagagtctgactt 11387658  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 46742734 - 46742815
Alignment:
Q  18 tgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactt 99  Q
    |||||||||||||||||||||| |||| || ||||| |||| ||| ||||||||||||| |||||||||| ||||| |||||    
T  46742734 tgaaggtggtgatgacgtggtgattttacaatggtggcgacgatgctgttttggtggattggtggagagaagagtccgactt 46742815  T

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Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 47896978 - 47896880
Alignment:
Q  1 ttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactt 99  Q
    |||||| ||| ||||  |||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| |||||||||||    
T  47896978 ttggcgatgatagaacgtgaaggtggtgatgacgtggtggttttgtagtggtgtcgacgatgctgttttggtggatcggtggagagaagagtctgactt 47896880  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 8039520 - 8039422
Alignment:
Q  1 ttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactt 99  Q
    |||||| ||| ||||| ||||||||||||||||| |||||||||||| |||||||||  ||| ||||||||||||||| |||||||| |||| ||||||    
T  8039520 ttggcgatgatagaaggtgaaggtggtgatgacgcggtggttttgcaatggtgtcgaagatgatgttttggtggatcgatggagagaagagtatgactt 8039422  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 27786548 - 27786629
Alignment:
Q  18 tgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactt 99  Q
    ||||||||||||| |||||||| |||| |||||||| |||| ||| |||||||||||||| || |||||| ||||| |||||    
T  27786548 tgaaggtggtgataacgtggtgattttacagtggtggcgacgatgatgttttggtggatcagttgagagaagagtccgactt 27786629  T

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Target: scaffold0725 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 1396 - 1297
Alignment:
Q  1 ttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactta 100  Q
    |||||||||| ||||| |||||  |||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||| || |||||||||    
T  1396 ttggcgttgatagaaggtgaagagggtgatgacgtggtggttttgcagtggtgtcgatgatgctgttttggtggatcggtggagagaagaatctgactta 1297  T

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Target: scaffold0088 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 27312 - 27213
Alignment:
Q  1 ttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactta 100  Q
    |||||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| || |||||||||    
T  27312 ttggcgttgatagaaggtgaagagggtgatgacgtggtgattttgcagtggtgtcgacgatgctgttttggtggatcggtggagagaagaatctgactta 27213  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 38499507 - 38499409
Alignment:
Q  1 ttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactt 99  Q
    |||||| ||| ||||| |||||| || |||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  38499507 ttggcgatgatagaaggtgaaggcggcgatgacgtggtggttttgtagtgctgtcgacgatgttgttttggtggatcggtggagagaagagtctgactt 38499409  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 10182373 - 10182276
Alignment:
Q  1 ttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactt 99  Q
    |||||| ||| || || |||||||||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||||||||| ||||| |||||    
T  10182373 ttggcggtgataggaggtgaaggtggtgatgacgtggtggttttgcagtggtggcgacgatgct-ttttggtggatcggtggagagaagagtccgactt 10182276  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 1533566 - 1533485
Alignment:
Q  18 tgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactt 99  Q
    ||||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||||||||||||||| ||||| |||||    
T  1533566 tgaaggtggtgatgacgtggtggttttacagtggtggcgacgatgctgttttggtggatcggtggagagaagagtccgactt 1533485  T

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Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 9567098 - 9566998
Alignment:
Q  1 ttggcgttgacagaagatgaa-ggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactt 99  Q
    |||||||||| ||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||| |||||| ||||    
T  9567098 ttggcgttgatagaaggtgaaaggtggtgacgacgtggtggttttgcagtggtgtcgacgatgctgttttggtgaatcgatggagagaagagtctaactt 9566999  T
Q  100 a 100  Q
    |    
T  9566998 a 9566998  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 11366985 - 11366920
Alignment:
Q  34 gtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactt 99  Q
    |||||||||||||||||||||| || ||| |||||||||||||| |||||||||  ||||||||||    
T  11366985 gtggtggttttgcagtggtgtcaacgatgctgttttggtggatcagtggagagaaaagtctgactt 11366920  T

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