View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17495_low_3 (Length: 668)
Name: NF17495_low_3
Description: NF17495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17495_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 16 - 540
Target Start/End: Original strand, 41822877 - 41823401
Alignment:
| Q |
16 |
acaaaataattgaatacgtatcaaggaataagcatcaaattaacaacagtgttggaaagataataaaatgctttaacagaatcaaaatgaatagaccctc |
115 |
Q |
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| T |
41822877 |
acaaaataattgaatatgtatcaaggaataagcatcaaattaataacagtgatggaaagataataaaatgctttaacagaatcaaaatgaatagaccctc |
41822976 |
T |
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| Q |
116 |
tcactcaaacaaagaacacaaacgatataaaccatcagaatgaaaaggaaaggtgaaaagcatgtgaaaaataacagtaactcaaggttttgaaactcca |
215 |
Q |
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| T |
41822977 |
tcactcaaacaaaaaacacaaacgatataaaccatcagaatgaaaaggaaaggtgaaaagcatgtgaaaaataacagtaactcaaggttttgaaactcca |
41823076 |
T |
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| Q |
216 |
aactctagctatgaaatcaatggaaggactcaactgaaattaacaggtgaaaagcatgtaaaatctgcaataatctgagagaagaaaggaataacatgag |
315 |
Q |
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| T |
41823077 |
aactctagctatgaaatcaatggaaggactcaactgaaattaacaggtgaaaagcatgtaaaatctgcaataatctgagagaagaaaggaataacatgag |
41823176 |
T |
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| Q |
316 |
aaaggtgtgatgctagagtgaataaatagaaaacagtttagtctagaacataatcagaaacgtctttaaggttgcaacaaaacaaaacaacattggactt |
415 |
Q |
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| T |
41823177 |
aaaggtgtgatgctagagtgaataaatagaaaacagtttagtctagaacataatcagaaacgtctttaaggttgcaacaaaacaaaacaacattggactt |
41823276 |
T |
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| Q |
416 |
gtttgagacgaaaaaggtgtccacaaatatgttaatgtggggcctaatttccactatagtcttagactgctacgactagtacctaaaatttcgtgaagat |
515 |
Q |
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| T |
41823277 |
gtttgagacgaaaaaggtgtccacaaatatgttaatgtggggcctaatttccactatagtcttagactgctacgactagtacctaaaatttcgtgaagat |
41823376 |
T |
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| Q |
516 |
gtttggccttcacccaatcacagtg |
540 |
Q |
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| T |
41823377 |
gtttggccttcacccaatcacagtg |
41823401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 582 - 656
Target Start/End: Original strand, 41823445 - 41823522
Alignment:
| Q |
582 |
cgtatcttcatttacttgttctgtgccatgaattgcta---gttcaaaatgtatgtggtgacggtatatttgaatatt |
656 |
Q |
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| T |
41823445 |
cgtatcttcatttacttcttctgtgccatgaattgctactagttcaaaatgtatgtggtgacggtatatttgaatatt |
41823522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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