View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17495_low_6 (Length: 484)
Name: NF17495_low_6
Description: NF17495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17495_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 41823063 - 41823401
Alignment:
| Q |
18 |
gttttgaaactccaaactctagctatgaaatcaatggaaggactcaactgaaattaacaggtgaaaagcatgtaaaatctgcaataatctgagagaagaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41823063 |
gttttgaaactccaaactctagctatgaaatcaatggaaggactcaactgaaattaacaggtgaaaagcatgtaaaatctgcaataatctgagagaagaa |
41823162 |
T |
|
| Q |
118 |
aggaataacatgagaaaggtgtgatgctagagtgaataaatagaaaacagtttagtctagaacataatcagaaacgtctttaaggttgcaacaaaacaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41823163 |
aggaataacatgagaaaggtgtgatgctagagtgaataaatagaaaacagtttagtctagaacataatcagaaacgtctttaaggttgcaacaaaacaaa |
41823262 |
T |
|
| Q |
218 |
acaacattggacttgtttgagacgaaaaaggtgtccacaaatatgttaatgtggggcctaatttccactatagtcttagactgctacgactagtacctaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41823263 |
acaacattggacttgtttgagacgaaaaaggtgtccacaaatatgttaatgtggggcctaatttccactatagtcttagactgctacgactagtacctaa |
41823362 |
T |
|
| Q |
318 |
aatttcgtgaagatgtttggccttcacccaatcacagtg |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41823363 |
aatttcgtgaagatgtttggccttcacccaatcacagtg |
41823401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 398 - 472
Target Start/End: Original strand, 41823445 - 41823522
Alignment:
| Q |
398 |
cgtatcttcatttacttgttctgtgccatgaattgcta---gttcaaaatgtatgtggtgacggtatatttgaatatt |
472 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41823445 |
cgtatcttcatttacttcttctgtgccatgaattgctactagttcaaaatgtatgtggtgacggtatatttgaatatt |
41823522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University