View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17495_low_7 (Length: 431)
Name: NF17495_low_7
Description: NF17495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17495_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 36991547 - 36991118
Alignment:
| Q |
1 |
aaaaacagaaaataaaattaaagcaaccccactaattcaaaaagttgaatactatttattaactatttcttggct---cccccaaccaaactaggtggtg |
97 |
Q |
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| T |
36991547 |
aaaaacagaaaataaaattaaagcaaccccactaattcaaaaagttgaatactatttattaagtatttcttggcttcccccccaaccaaactaggtggtg |
36991448 |
T |
|
| Q |
98 |
ttttcaaatgttgcttgttgctgaaaaagattcaaaccctccattcttggttgaccaatttctccaaacctcatcagctgctgctgctgc---actttct |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36991447 |
ttttcaaatgttgcttgttgctgaaaaagattcaaaccctccattcttggttgaccaatttctccaaacctcatcagctgctgctgctgctgcactttct |
36991348 |
T |
|
| Q |
195 |
gcctgttgttgtgtaccaccacctccatagaaattactatgtgcacctcctcctcctatccccaacaaatccagtgtcattacatctccaccacccttac |
294 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36991347 |
gcctgttgttgtgtaccacc---tccatagaaattactatgtgcacctcctcctcctatccccaacaaatccagtgtcattacatctccaccacccttac |
36991251 |
T |
|
| Q |
295 |
ttccactaatgttcataacattattactattacttgatgcac------------ctccaacaacactattaatgctttgagtttgattgttttgttcaat |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36991250 |
ttccactaatgttcataacattattactattacttgatgcacctcctcctccacctccaacaacactattaatgctttgagtttgattgttttgttcaat |
36991151 |
T |
|
| Q |
383 |
gatcttcgataaagccttactttgatccaatat |
415 |
Q |
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| T |
36991150 |
gatcttcgataaagccttactttgatccaatat |
36991118 |
T |
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Back To:
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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 415
Target Start/End: Complemental strand, 46621400 - 46621353
Alignment:
| Q |
368 |
attgttttgttcaatgatcttcgataaagccttactttgatccaatat |
415 |
Q |
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| T |
46621400 |
attgttttgctcaatgatctttgataaggccttactttgatccaatat |
46621353 |
T |
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