View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17495_low_9 (Length: 344)
Name: NF17495_low_9
Description: NF17495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17495_low_9 |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 29193307 - 29192968
Alignment:
| Q |
7 |
tccaagaatatctaaccaatgacaactttt--atacctgtaagagtgcttgtttgttgacataaattctgactgagacgaaatttctgaaccaaagtcaa |
104 |
Q |
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| T |
29193307 |
tccaacaaaatctaaccaatgacaacttttttatacctgtaagagtgcttgtttgttgacataaattctgactgagacgaaatttctgaaccaaagtcaa |
29193208 |
T |
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| Q |
105 |
tatttaaaggttccggctccttgtcatctttctggatctcctgggaaggaacacaatcagaaaaaatcaacaagcaaagactatggttttataagtgcaa |
204 |
Q |
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| T |
29193207 |
tatttaaaggttccggctccttgtcatctttcaggatctcctgggaaggaacacaatcagaaaaaatcaacaagcaaagactatggttttataagtgcaa |
29193108 |
T |
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| Q |
205 |
gtgcaaccgctggttctattttagttgtgatttattttagtatgttaagcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatg |
304 |
Q |
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| T |
29193107 |
gtgcaaccgctggttctattttagttgtgatttattttagtatgttaagcatcttttaccttcaaagcactgatgaatgattgtgtttcatagattgatg |
29193008 |
T |
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| Q |
305 |
gaaacctcatagcaaacttttgaatctgccaaaaagaaaa |
344 |
Q |
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| T |
29193007 |
gaaacctcatagcaaacttttgaatctgccaaaaagaaaa |
29192968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 164 - 323
Target Start/End: Complemental strand, 29183064 - 29182893
Alignment:
| Q |
164 |
gaaaaaatcaacaagcaaagactatggttttataagtgcaagtgcaa------------ccgctggttctattttagttgtgatttattttagtatgtta |
251 |
Q |
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| T |
29183064 |
gaaaaaatcaacaagcaaagactatggttttataagtgcaagtgcaagtgcaagtgcaaccgctggttctattttagttgtgatttattttagtatgtta |
29182965 |
T |
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| Q |
252 |
agcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatggaaacctcatagcaaactt |
323 |
Q |
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| T |
29182964 |
agcatcttttaccttcaaagcactgatgaatgattgtgtttcatagattgatggaaacctcatagcaaactt |
29182893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 33 - 344
Target Start/End: Original strand, 33632671 - 33632987
Alignment:
| Q |
33 |
ttttatacctgtaagagtgcttgtttgttgacataaattctgactgagacgaaatttctgaaccaaagtcaatatttaaaggttccggctccttgtcatc |
132 |
Q |
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| T |
33632671 |
ttttatacctgtaagagtgcttgtttgttgacataaattctgactgagatgaaatttctgaaccaaagtcaatatttaaaggttctggctccttgttatc |
33632770 |
T |
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| Q |
133 |
tttctggatctcctgggaaggaacacaatcagaaaaaatcaacaagcaaagactatggttttataagt---gcaagtgcaaccgctggttcta----ttt |
225 |
Q |
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||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| | || ||||||| || |||||| ||| |
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| T |
33632771 |
ttttaggatctcctgggaaggaacacaatcataaaaaatcaacaagcaaatactatggttttataagtgaagaaattgcaaccccttgttctatagtttt |
33632870 |
T |
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| Q |
226 |
tagttgtgatttattttagtatgttaagcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatggaaacctcatagcaaactttt |
325 |
Q |
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| T |
33632871 |
tagttgtgattta--ttactatgataagcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatggaaacctcatagcaaactttt |
33632968 |
T |
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| Q |
326 |
gaatctgccaaaaagaaaa |
344 |
Q |
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|||||||| |||||||||| |
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| T |
33632969 |
gaatctgcaaaaaagaaaa |
33632987 |
T |
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