View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17496_high_17 (Length: 346)

Name: NF17496_high_17
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17496_high_17
NF17496_high_17
[»] chr1 (1 HSPs)
chr1 (37-333)||(37218484-37218777)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 37 - 333
Target Start/End: Original strand, 37218484 - 37218777
Alignment:
Q  37 aatgggattaaaactgttacctgctacttaatgttggggaagtattaccattagtaattatagaagcacatgagtttgaaagttgttcaaaattgcttcc 136  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |   ||||||||||||||||||||||||||||||||| ||||||||    
T  37218484 aatggcattaaaactgttacctgctacttaatgttggggaagtattactattact---tatagaagcacatgagtttgaaagttgttcaaagttgcttcc 37218580  T
Q  137 atgtgtgtcggatttgtgtacttgctgtaagacatgagcttgatgttggttgctcaaaccatccagacaagtttctccattaatgtcattcaattcgaca 236  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37218581 atgtgtgtcggatttgtgtacttgttgtgagacatgagcttgatgttggttgctcaaaccatccagacaagtttctccattaatgtcattcaattcgaaa 37218680  T
Q  237 tcacataggtttattatttgatcatagagtggcaaactagctcttgcacgtttctttgttcttatattatggtagttatctatctcatttcctcttc 333  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37218681 tcacatagatttattatttgatcatagagtggcaaactagctcttgcacgtttctttgttcttatattatggtagttatctatctcatttcctcttc 37218777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University