View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_high_18 (Length: 343)
Name: NF17496_high_18
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_high_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 41846022 - 41845684
Alignment:
| Q |
13 |
agttggaacttgttaagattccatggaggaaacctgaaccaaaaatcagtgtagtaacttctcctagccacagctttatggtgactgaatgcatcaaatg |
112 |
Q |
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| T |
41846022 |
agttggaacttgttaagattccatggaggaaacctgaaccaaaaatcagtgtagtaacttctcctagccacagctttatggtgactgaatgcatcaaatg |
41845923 |
T |
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| Q |
113 |
agaacttcccatgatacttgccaaatccacattcaccaactcctccaaatgggatggtatccgctacatactgc--------nnnnnnnnntagttatct |
204 |
Q |
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| T |
41845922 |
agaacttcccatgatacttgccaaatccacattcaccaactcctccaaatgggatggtatccgctatatactgcaaaaaaaaaaaaaaaaaaagttatct |
41845823 |
T |
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| Q |
205 |
ttcgtataataattgaagtgtttgataaaattagcggtttaaataagtgataatgcaagtcactatcagcaaataaatacctgtagaattgcatcattaa |
304 |
Q |
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| T |
41845822 |
ttagtataataatcgaagtgtttgataaaattagcggttgaaataagtgataatgcaagtcactatcagcaaataaatacctgtagaattgcatcattaa |
41845723 |
T |
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| Q |
305 |
aaacaatgctcccagatgatgtttcagataccaatcttc |
343 |
Q |
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| T |
41845722 |
atacaatgctcccagatgatgtttcagataccaatcttc |
41845684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 24401569 - 24401455
Alignment:
| Q |
50 |
accaaaaatcagtgtagtaacttctcctagccacagctttatggtgactgaatgcatcaaatgagaacttcccatgatacttgccaaatccacattcacc |
149 |
Q |
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| T |
24401569 |
accaaaaatcagttaagaaacttcttctaacaattgctttttggtgactgaatgtgtcaaaggagaatttcccatggtacatgccaaatccacttccacc |
24401470 |
T |
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| Q |
150 |
aactcctccaaatgg |
164 |
Q |
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| T |
24401469 |
tactcctccaaatgg |
24401455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 7897179 - 7897150
Alignment:
| Q |
214 |
taattgaagtgtttgataaaattagcggtt |
243 |
Q |
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| T |
7897179 |
taattgaagtgtttgataaaattagcggtt |
7897150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 50541439 - 50541410
Alignment:
| Q |
214 |
taattgaagtgtttgataaaattagcggtt |
243 |
Q |
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| T |
50541439 |
taattgaagtgtttgataaaattagcggtt |
50541410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 34394771 - 34394799
Alignment:
| Q |
217 |
ttgaagtgtttgataaaattagcggttta |
245 |
Q |
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| T |
34394771 |
ttgaagtgtttgataaaattagcggttta |
34394799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 32839479 - 32839447
Alignment:
| Q |
214 |
taattgaagtgtttgataaaattagcggtttaa |
246 |
Q |
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| T |
32839479 |
taattgaattgtttgataaaattagcggtttaa |
32839447 |
T |
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