View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_high_2 (Length: 534)
Name: NF17496_high_2
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 13 - 518
Target Start/End: Complemental strand, 2518264 - 2517759
Alignment:
| Q |
13 |
aatattgcatatgaaattctgtttgtttcctgagttcttttcttgttgagaatttcaaggaattgctggatattggaaagtggttatgtgatttgggctt |
112 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2518264 |
aatattgcatatgaaattctgtttatttcctgagttcttttcttgttaggaatttcaaggaattgctggatattggaaagtggttatgtgatttgggctt |
2518165 |
T |
|
| Q |
113 |
aaaatcccttgatgtgtagcttgtgattagaattttagttttatttttaagtcgagattgaaattaatcaaagaatagttgcaacatcgaaattgtgtcg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2518164 |
aaaatcccttgatgtgtagcttgtgattagaattttagttttatttttaagtcgagattgaaattaatcaaagaatagttgcaacattgaaattgtgtcg |
2518065 |
T |
|
| Q |
213 |
tgtagctaccgatgatttttgcataattgcagccaatagctggctgtggtgtgtctaaagttgtggaatctggacacaaagattataaggaaggtgattt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2518064 |
tgtagctaccgatgatttttgcataattgcagccaattgctggctgtggtgtgtctaaagttgtggaatctggacacaaagattataaggaaggtgattt |
2517965 |
T |
|
| Q |
313 |
agtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatact |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517964 |
agtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatact |
2517865 |
T |
|
| Q |
413 |
ggaattcttggtatgtattcaacaatttcaatttattacgttgattttgtagtcaagaatgcacttgatgtgagtatgatatcaaggccttaagttatga |
512 |
Q |
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| T |
2517864 |
ggaattcttggtatgtattcaacaatttcaatttattacgttgattttgtagtcaagaatgcacttgatgtgagtatgatatcaaggccttaagttatga |
2517765 |
T |
|
| Q |
513 |
tgtttt |
518 |
Q |
| |
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|||||| |
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| T |
2517764 |
tgtttt |
2517759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 166 - 459
Target Start/End: Complemental strand, 2513892 - 2513601
Alignment:
| Q |
166 |
gagattgaaattaatcaaagaatagttgcaacatcgaaattgtgtcgtgtagctaccgatgatttttgcataattgcagccaatagctggctgtggtgtg |
265 |
Q |
| |
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|||||||||| | ||||||||||| |||||| || || |||| | ||| |||||| ||||||||||| ||||||||||| ||| |||| | ||||||| |
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| T |
2513892 |
gagattgaaacttatcaaagaataattgcaatattgaggttgtattgtgcagctactgatgatttttg--taattgcagccgataactggttatggtgtg |
2513795 |
T |
|
| Q |
266 |
tctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaa |
365 |
Q |
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||||||||| | ||||||||||||||||||||||| ||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||||| |||| |
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| T |
2513794 |
tctaaagttctagaatctggacacaaagattataaagaaggtgatatcgtgtgggggataactaattgggaagagtacagcttgatccctgcagcacaaa |
2513695 |
T |
|
| Q |
366 |
tacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttattacgttgattt |
459 |
Q |
| |
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||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||||| || ||||||||||||| ||| |||||||| |
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| T |
2513694 |
tacattttaaaattgagcacactgatgttcctctttcctactatacaggaattcttggtatgtgatccacaatttcaattttttatgttgattt |
2513601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 177 - 430
Target Start/End: Complemental strand, 2507221 - 2506970
Alignment:
| Q |
177 |
taatcaaagaatagttgcaacatcgaaattgtgtcgtgtagctaccgatgatttttgcataattgcagccaatagctggctgtggtgtgtctaaagttgt |
276 |
Q |
| |
|
||||||||||||| |||||| || ||| |||| | ||| || ||| ||||||||||| ||||||||||| || |||| | |||||||||||||||||| |
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| T |
2507221 |
taatcaaagaataattgcaatattgaagttgtattgtgcagttactgatgatttttg--taattgcagccgttaactggttatggtgtgtctaaagttgt |
2507124 |
T |
|
| Q |
277 |
ggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaa |
376 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| || ||||||| ||||||| |
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| T |
2507123 |
ggaatctggacacaaagattataaggaaggtgatatagtgtgggggataactaattgggaagagtacagcttgatccctgcggcacaaatacatttcaaa |
2507024 |
T |
|
| Q |
377 |
attgaacacacagatgttcctctttcgtactatactggaattcttggtatgtat |
430 |
Q |
| |
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||||| || || |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
2507023 |
attgagcatactgatgttcctctttcctactatactggaattctaggtatgtat |
2506970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 263 - 446
Target Start/End: Original strand, 2428420 - 2428603
Alignment:
| Q |
263 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctc |
362 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||||||| ||||| ||||||| ||||||||||| || ||| |||||||||||| |
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|
| T |
2428420 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctgcagctc |
2428519 |
T |
|
| Q |
363 |
aaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaattt |
446 |
Q |
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||||||||||||||||||| || |||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2428520 |
aaatacttttcaaaattgagcatacagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaattt |
2428603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 263 - 446
Target Start/End: Original strand, 1458713 - 1458896
Alignment:
| Q |
263 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctc |
362 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||||||| ||||| | ||||| ||||||||||| || ||| |||||||||||| |
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| T |
1458713 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctc |
1458812 |
T |
|
| Q |
363 |
aaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaattt |
446 |
Q |
| |
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||||||||||||||||||| || |||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1458813 |
aaatacttttcaaaattgagcatacagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaattt |
1458896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 236 - 448
Target Start/End: Complemental strand, 2498231 - 2498019
Alignment:
| Q |
236 |
taattgcagccaatagctggctgtggtgtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattggg |
335 |
Q |
| |
|
||||||||| |||||| || | ||| ||||||||||| | ||||| ||||| ||||||||||||||||||||||| ||||| || ||| |||| |
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|
| T |
2498231 |
taattgcaggtaatagcaggttttggggtgtctaaagtccttgaatcaggacatcctgattataaggaaggtgatttagtttggggattctgtaaatggg |
2498132 |
T |
|
| Q |
336 |
aagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaac |
435 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| || ||||||| |||||| |
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|
| T |
2498131 |
aagagtacagcttggtcccttcatctcaaatacttttcaaaattgagcacactgatgtcccactttcctactatactggaatactcggtatgttttcaac |
2498032 |
T |
|
| Q |
436 |
aatttcaatttat |
448 |
Q |
| |
|
||||||||||||| |
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|
| T |
2498031 |
aatttcaatttat |
2498019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 263 - 355
Target Start/End: Original strand, 2431399 - 2431491
Alignment:
| Q |
263 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccct |
355 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||||||| ||||| ||||||| ||||||||||| || ||| ||||| |
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|
| T |
2431399 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccct |
2431491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 425
Target Start/End: Original strand, 2434784 - 2434943
Alignment:
| Q |
263 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctc |
362 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||| ||| ||| | ||||||| ||||||||||| || ||| | ||| || || |
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|
| T |
2434784 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgattcagtttggagtcttactaaatgggaagagtatagtttggttcctacaactg |
2434883 |
T |
|
| Q |
363 |
aaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggta |
425 |
Q |
| |
|
|| ||||||||||||| |||| ||||| || ||||| || ||||| ||||||||||||| |
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|
| T |
2434884 |
gaa---ttttcaaaattgagcacaatgatgtcccactttcctattataccggaattcttggta |
2434943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 293 - 393
Target Start/End: Complemental strand, 50703558 - 50703459
Alignment:
| Q |
293 |
gattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatg |
392 |
Q |
| |
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||||||||||||||||||| ||| ||||| || ||| |||||||||||||||||| | ||| | |||||||||||||||||||||| ||||| |||| |
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|
| T |
50703558 |
gattataaggaaggtgattaagtttggggattctgtaaatgggaagagtacagcttggtacct-tatctcaaatacttttcaaaattgagcacactgatg |
50703460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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