View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_high_24 (Length: 304)
Name: NF17496_high_24
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 6260057 - 6259848
Alignment:
| Q |
14 |
agacaagacagtaagcgaaaaagaagcgcttattgttttattgaataataatgggaaatcaaaagctgaaatggacgaatgaagaagaagacgctcttat |
113 |
Q |
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| T |
6260057 |
agacaagacagtaagcgaaaaagaagcgcttattgttttattgaataataatgggaaatcaaaagctgaaatggacgaatgaagaagaagacgctcttat |
6259958 |
T |
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| Q |
114 |
cgctggaatcgaaacacatggccctggtaaatggaaggccattctccttgatcctcagtttggtcctttactcacttctcgttccaacatcgacctcaag |
213 |
Q |
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| T |
6259957 |
cgctggaatcgaaacacatggccctggtaaatggaaggccattctccttgatcctcagtttggtcctttactcacttctcgttccaacatcgacctcaag |
6259858 |
T |
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| Q |
214 |
gttagcttac |
223 |
Q |
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|||||||||| |
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| T |
6259857 |
gttagcttac |
6259848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 291
Target Start/End: Complemental strand, 6259806 - 6259778
Alignment:
| Q |
263 |
aatatttcttggtttgtttaggataaatg |
291 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
6259806 |
aatatttcttggtttgtttaggataaatg |
6259778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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