View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_high_44 (Length: 231)
Name: NF17496_high_44
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_high_44 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 2146471 - 2146252
Alignment:
| Q |
12 |
aatactgcggaaccccagaattaggatttctttttaacttccctttccaattaagagaagaaaatcaaattagcaataatcaaagtgatcgatgtgtgta |
111 |
Q |
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| T |
2146471 |
aatactgcggaaccccagaattaggacttctttttaacttccctttccaattaagagaagaaaatcaaattagcaataatcaaagtgatcgatgtgtgta |
2146372 |
T |
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| Q |
112 |
cccaggctttgaagttgtttgcaaaaataagcaacctttgattacactctcaaatggaaaagaatatgttatcaaaaatatatcccatgagagccaaaga |
211 |
Q |
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| T |
2146371 |
cccaggctttgaagttgtttgcaaaaataagcaacctttgattacactctcaaatggaaaagaatatgttatcaaaaatatatcctatgagagccaaaga |
2146272 |
T |
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| Q |
212 |
atatggatggatgatcccaa |
231 |
Q |
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| T |
2146271 |
atatggatggatgatcccaa |
2146252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 50 - 213
Target Start/End: Complemental strand, 2151843 - 2151680
Alignment:
| Q |
50 |
ttccctttccaattaagagaagaaaatcaaattagcaataatcaaagtgatcgatgtgtgtacccaggctttgaagttgtttgcaaaaataagcaacctt |
149 |
Q |
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| T |
2151843 |
ttcccattccaattaagaaaagaaaatcaaattaacaatgctcaaagtgatcgatgtgtgtacccaggatttgaagttgtttgcaagaataagcaacctt |
2151744 |
T |
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| Q |
150 |
tgattacactctcaaatggaaaagaatatgttatcaaaaatatatcccatgagagccaaagaat |
213 |
Q |
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| T |
2151743 |
tgattacactctcaaatggaagagaatttgttgtcaaacatatttaccgtgagagacaaagaat |
2151680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 89 - 228
Target Start/End: Complemental strand, 2142269 - 2142127
Alignment:
| Q |
89 |
aatcaaagtgatcgatgtgtgtacccaggctttgaagttgtttgcaaaaataag---caacctttgattacactctcaaatggaaaagaatatgttatca |
185 |
Q |
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| T |
2142269 |
aatcaaagtgatcgatgtgggtacccaggatttgaagtttattgcaacaatatgaaccaacctttgattacactctcaaatggaagagaatttattgtca |
2142170 |
T |
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| Q |
186 |
aaaatatatcccatgagagccaaagaatatggatggatgatcc |
228 |
Q |
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| T |
2142169 |
aaaaattttcccatgcaagtcaaagaatttggttggatgatcc |
2142127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 2142331 - 2142269
Alignment:
| Q |
13 |
atactgcggaaccccagaattaggatttctttttaacttccctttccaattaagagaagaaaa |
75 |
Q |
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| T |
2142331 |
atactgcggaaccctagagtcgggatttttttttcagttccctttccaattaagagaaaaaaa |
2142269 |
T |
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