View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_high_50 (Length: 208)
Name: NF17496_high_50
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_high_50 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 34016777 - 34016984
Alignment:
| Q |
1 |
tgaatgaacgatgtgcatggctttaggtaaacattatgatgtatttgactattatgatttacggaaaactacattgacctcccttgaggtctccctttta |
100 |
Q |
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| T |
34016777 |
tgaatgaacgatgtgcatggctttaggtaaacattatgatgtatttgactattatgatttacagaaaactacattgacctcccttgaggtctccctttta |
34016876 |
T |
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| Q |
101 |
agttaccgtcgttagtgctctgtcaacaaaaacttaagaaagtcgcggtgtttctacaacaagcagaagccacttccaggttcaagtagcataggaattt |
200 |
Q |
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| T |
34016877 |
agttaccgtcgttagtgctctgtcaacaaaaacttaagaaagtcgcggtgtttctacaacaagcagaagtcacttccaggttcaagtagcataggaattt |
34016976 |
T |
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| Q |
201 |
gcttcttc |
208 |
Q |
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|||||||| |
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| T |
34016977 |
gcttcttc |
34016984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 34007923 - 34008130
Alignment:
| Q |
1 |
tgaatgaacgatgtgcatggctttaggtaaacattatgatgtatttgactattatgatttacggaaaactacattgacctcccttgaggtctccctttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34007923 |
tgaatgaacgatgtgcatggctttaggtaaacattatgatgtatttgactattatgatttacggaaaactacactgacctcccttgaggtctccctttta |
34008022 |
T |
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| Q |
101 |
agttaccgtcgttagtgctctgtcaacaaaaacttaagaaagtcgcggtgtttctacaacaagcagaagccacttccaggttcaagtagcataggaattt |
200 |
Q |
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| T |
34008023 |
agttaccgtcgttagtgctctgtcaacaaaaacttaagaaagtcacggtgtttctacaacaagcagaagtcacttccaggttcaagtagcataggaattt |
34008122 |
T |
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| Q |
201 |
gcttcttc |
208 |
Q |
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|||||||| |
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| T |
34008123 |
gcttcttc |
34008130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 33154134 - 33154320
Alignment:
| Q |
1 |
tgaatgaacgatgtgcatggctttaggtaaacattatgatgtatttgactattatgatttacggaaaactacattgacctcccttgaggtctccctttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33154134 |
tgaatgaacgatgtgcatggctttaggtaaacattatgatgtatttgactattatgatttacggaaaactacactgacctcccttgaggtctccctttta |
33154233 |
T |
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| Q |
101 |
agttaccgtcgttagtgctctgtcaacaaaaacttaagaaagtcgcggtgtttctacaacaagcagaagccacttccaggttcaagt |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33154234 |
agttaccgtcgttagtgctctgtcaacaaaaacttaagaaagtcacggtgtttctacaacaagcagaagccactcccaggttcaagt |
33154320 |
T |
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