View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_high_6 (Length: 466)
Name: NF17496_high_6
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Complemental strand, 34017403 - 34016961
Alignment:
| Q |
19 |
attctagtactcttcaataaatatcatcaatggtataattctttcttaacaattctgatttccttctaccatgtacaacaactctgctacagtgtaaagg |
118 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34017403 |
attctattactcttcaataaatatcatcaatggtataattctttcttaacaattctgatttccttctaccatgtacaacaactctgctacagtgtaacgg |
34017304 |
T |
|
| Q |
119 |
tgtgaccattgtacattatcatattcactttgactaactactccaccgctctgtcnnnnnnnnnnnnctacaccgccactacacacatcttaaacctttt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
34017303 |
tgtgaccattgtacattatcatattcactttgactaactactccaccgctctgtcaaaaagaaaaaactacaccgccactgcacacatcttaaacctttt |
34017204 |
T |
|
| Q |
219 |
tcaactttccatctatttattaaaatcacatagcagtgcaattcaatagtacattaggggaagaggttttaaaagtttctattagaacatagacagtggt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34017203 |
tcaactttccatctatttattaaaatcacatagcagtgcaattcaatagtacattaggggaagaggttttaaaagtttctattagaacatagacagtggt |
34017104 |
T |
|
| Q |
319 |
gaaattgatttggagaggactcttctgatttggacagcgaggagcggcggcacacatcaacttgcattgacacgccgccaatagttctgaaacaacgttt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34017103 |
gaaattgatttggagaggactcttctgatttggacagcgaggagcggcggcacacatcaacttgcattgacacgccgccaatagttctgaaacaacgttt |
34017004 |
T |
|
| Q |
419 |
atgtctttatgtcttcatggaagaagcaaattcctatgctact |
461 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34017003 |
atgtctttatgtcttcatggaagaagcaaattcctatgctact |
34016961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Complemental strand, 34008549 - 34008107
Alignment:
| Q |
19 |
attctagtactcttcaataaatatcatcaatggtataattctttcttaacaattctgatttccttctaccatgtacaacaactctgctacagtgtaaagg |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
34008549 |
attctattactcttcaataaatatcatcaatggtataattctttcttaacaattctgatttccttctaccatgtacaacaactttgctacagtgtaacgg |
34008450 |
T |
|
| Q |
119 |
tgtgaccattgtacattatcatattcactttgactaactactccaccgctctgtcnnnnnnnnnnnnctacaccgccactacacacatcttaaacctttt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
34008449 |
tgtgaccattgtacattatcatattcactttgactaactactccaccgctctgtcaaaaagaaaaaactacaccgccactgcacacatcttaaacctttt |
34008350 |
T |
|
| Q |
219 |
tcaactttccatctatttattaaaatcacatagcagtgcaattcaatagtacattaggggaagaggttttaaaagtttctattagaacatagacagtggt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
34008349 |
tcaactttccatctatttattaaaatcacatagcagtgcaattcaatagtacattagggtaagaggttttaaaattttctattagaacatagactgtggt |
34008250 |
T |
|
| Q |
319 |
gaaattgatttggagaggactcttctgatttggacagcgaggagcggcggcacacatcaacttgcattgacacgccgccaatagttctgaaacaacgttt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34008249 |
gaaattgatttggagaggactcttctgatttggacagcgaggagcggcggcacacatcaacttgcattgacacgccgccaatagttctgaaacaacgttt |
34008150 |
T |
|
| Q |
419 |
atgtctttatgtcttcatggaagaagcaaattcctatgctact |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34008149 |
atgtctttatgtcttcatggaagaagcaaattcctatgctact |
34008107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Complemental strand, 33154767 - 33154329
Alignment:
| Q |
19 |
attctagtactcttcaataaatatcatcaatggtataattctttcttaacaattctgatttccttctaccatgtacaacaactctgctacagtgtaaagg |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33154767 |
attctattactcttcaataaatatcatcaatggtataattctttcttaacaattctgatttccttctaccatgtacaacaactctgctacagtgtaacgg |
33154668 |
T |
|
| Q |
119 |
tgtgaccattgtacattatcatattcactttgactaactactccaccgctctgtcnnnnnnnnnnnnctacaccgccactacacacatcttaaacctttt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
33154667 |
tgtgaccattgtacattatcatattcactttgactaactactccaccgctctgtcaaaaagaaaaaactacaccgccactgcacacatcttaaacctttt |
33154568 |
T |
|
| Q |
219 |
tcaactttccatctatttattaaaatcacatagcagtgcaattcaatagtacattaggggaagaggttttaaaagtttctattagaacatagacagtggt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
33154567 |
tcaactttccatctatttattaaaatcacatagcagtgcaattcaatagtacattagggtaagaggttttaaaagtttctattagaacatagacggtggt |
33154468 |
T |
|
| Q |
319 |
gaaattgatttggagaggactcttctgatttggacagcgaggagcggcggcacacatcaacttgcattgacacgccgccaatagttctgaaacaacgttt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||| |
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|
| T |
33154467 |
gaaattgatttggagaggactcttctgatttggacagcgaggagcggcggcacacatcaacttgcatcgatacgccgccaatagttctgaaacaacattt |
33154368 |
T |
|
| Q |
419 |
atgtctttatgtcttcatggaagaagcaaattcctatgcta |
459 |
Q |
| |
|
| ||| | |||||||| ||||||||||||| ||||||||| |
|
|
| T |
33154367 |
aggtc--tctgtcttcacggaagaagcaaatccctatgcta |
33154329 |
T |
|
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