View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_1 (Length: 573)
Name: NF17496_low_1
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 12 - 556
Target Start/End: Complemental strand, 11353038 - 11352494
Alignment:
| Q |
12 |
cataggttgaatctgatatcagtccatgagaccaaagatactcagctctagagttgaaatctgtgttgaattccagaagaggattccctatctgcaatat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11353038 |
cataggttgaatctgatatcagtccatgagaccaaagatactcagctctagagttgaaatctgtgttgaattccagaagaggattccctatctgcaatat |
11352939 |
T |
|
| Q |
112 |
caacaaagtaataagttgatgttattcatgttgacctaaatgtttcttattctataattatcaaatgtgtgaagcaatgtcgttttagtctttacaagaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11352938 |
caacaaagtaataagttgatgttattcatgttgacctaaatgtttcttattctataattatcaaatgtgtgaagcaatgtcgttttagtctttacaagaa |
11352839 |
T |
|
| Q |
212 |
tcgaaattacagaaatatcctcgagagtgtcgtcaattagtaattttatggatcaaattgactaatagaacacacattataataactaatcaaagacgta |
311 |
Q |
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| T |
11352838 |
tcgaaattacagaaatatcctcgagagtgtcgtcaattagtaattttatggatcaaattgactaatagaacacacattataataactaatcaaagacgta |
11352739 |
T |
|
| Q |
312 |
cacattcgaggactacaaagacaaataaaatacacaagcagagatatttttgcattttgatttatttatagactatattgaccgcgcttcacacatttaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11352738 |
cacattcgaggactacaaagacaaataaaatacacaagcagagatatttttgcattttgatttatttatagactatattgaccgcgcttcacacatttaa |
11352639 |
T |
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| Q |
412 |
gcacgaaaatgcatgtttattcaataaaaaatctctcatatatgtgcactcactgcaattcccttgagattgaatttgcttttggtttgaacaatgagtt |
511 |
Q |
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| T |
11352638 |
gcacgaaaatgcatgtttattcaataaaaaatctctcatatatgtgcactcactgcaattcccttgagattgaatttgcttttggtttgaacaatgagtt |
11352539 |
T |
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| Q |
512 |
gtgcaagttggggtacatagtgacctgacacaagcatgaattaat |
556 |
Q |
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| T |
11352538 |
gtgcaagttggggtacatagtgacctgacacaagcatgaattaat |
11352494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 21994553 - 21994626
Alignment:
| Q |
35 |
ccatgagaccaaagatactcagctctagagttgaaatctgtgttgaattccagaagaggattccctatctgcaa |
108 |
Q |
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| T |
21994553 |
ccatgagaccacagatattcagctctagagttgaaatctgtgtcaaaatccaagagaggatttccaatctgcaa |
21994626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 14934899 - 14934844
Alignment:
| Q |
66 |
tgaaatctgtgttgaattccagaagaggattccctatctgc--aatatcaacaaag |
119 |
Q |
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| T |
14934899 |
tgaaatctgtgttgaattcaagaaggggatttcctatctgcaaaatatcaacaaag |
14934844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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