View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_10 (Length: 434)
Name: NF17496_low_10
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_10 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Original strand, 1451561 - 1451975
Alignment:
| Q |
20 |
tagggggtctctcaaatttgcagtacttgtaagttgtgaatcagatatgatattgttgagtaaatttgactgtttctgagcagattaagctcagccttgc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1451561 |
tagggggtctctcaaatttgcagtacttgtaagttgtgaatcagatatgatattgttgagtaaatttgactgtttctgagcagattaagctcagccttgc |
1451660 |
T |
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| Q |
120 |
ataaatctgaattttcttcccttttcaatggaaggggactttataataataatataacaggaacaatcccagaagagctaggaaatttaacaaacttggg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1451661 |
ataaatctgaattttcttcccttttcaatggaaggggactttataataataatataacaggaacaatcccagaagagctaggaaatttaacaaacttggg |
1451760 |
T |
|
| Q |
220 |
aagcttggatctttacttgaacaatttaaccggtaccataccaaatacattcggcaagcttcaaaaactaagtttcctgtatgacatactttcattattc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1451761 |
aagcttggatctttacttgaacaatttaaccggtaccataccaaatacattcggcaagcttcaaaaactaagtttcctgtatgacatactttcattattc |
1451860 |
T |
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| Q |
320 |
tcatatctttgatctgcnnnnnnnttatgttggtttcaannnnnnnctacctttaccttgttcaccatccttttttgtgtgttttccaatgcaaaatgta |
419 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1451861 |
tcatatctttgatctgcaaaaaaattatgttggtttcaatttttttctacctttaccttgttcaccatccttttttgtgtgttttccaatgcaaaacgta |
1451960 |
T |
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| Q |
420 |
gtaagttttgtagcc |
434 |
Q |
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||||||||||||||| |
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| T |
1451961 |
gtaagttttgtagcc |
1451975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 27 - 422
Target Start/End: Original strand, 1445392 - 1445790
Alignment:
| Q |
27 |
tctctcaaatttgcagtacttgtaagttgtgaatcagatatgatattgttgagtaaatttgactgtttctg-agcagattaagctcagccttgcataaat |
125 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||| |||| |
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| T |
1445392 |
tctctcaaatttggagtacttgtaagttgtgaatcagatatgatattgttgagtgaatttgactgtttttttagcagattaagctcaaccttgcacaaat |
1445491 |
T |
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| Q |
126 |
ctgaattttcttcccttttcaatggaaggggactttataataataatataacaggaacaatcccagaagagctaggaaatttaacaaacttgggaagctt |
225 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||| ||||| |
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| T |
1445492 |
ctgaattttcttcccttttcaatggaagggaactttataataataagataacaggaactatcccggaagagctaggaaatttgacaaacttggagagctt |
1445591 |
T |
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| Q |
226 |
ggatctttacttgaacaatttaaccggtaccataccaaatacattcggcaagcttcaaaaactaagtttcctgtatgacatactttcattattctcatat |
325 |
Q |
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||||||||||||||||||| ||| ||||||||||| |||||||| ||||| ||||||||||| | |||||||||||||||||||| |||||||||||| |
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| T |
1445592 |
ggatctttacttgaacaatataagtggtaccataccgaatacattgggcaaccttcaaaaactccgcttcctgtatgacatactttcgttattctcatat |
1445691 |
T |
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| Q |
326 |
ctttgatctgc--nnnnnnnttatgttggtttcaannnnnnnctacctttaccttgttcaccatccttttttgtgtgttttccaatgcaaaatgtagta |
422 |
Q |
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||||||||||| |||||||| |||||| ||||||||||| |||||| || | |||||||||||||||| ||||||||||||||| |
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| T |
1445692 |
ctttgatctgcaaaatttatttatgttgatttcaatttttttctacctttaccctgttcaatatacatttttgtgtgttttccgatgcaaaatgtagta |
1445790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 122 - 334
Target Start/End: Original strand, 1426209 - 1426420
Alignment:
| Q |
122 |
aaatctgaattttcttcccttttcaatggaaggggactttataataataatataacaggaacaatcccagaagagctaggaaatttaacaaacttgggaa |
221 |
Q |
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|||| |||| ||||||||| ||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||| | |
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| T |
1426209 |
aaatatgaactttcttcccctttcaatggcagggaactttatagtaataatataacaggaaaaatcccagaagagctaggaaatttgacaaacttggtga |
1426308 |
T |
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| Q |
222 |
gcttggatctttacttgaacaatttaaccggtaccataccaaatacattcggcaagcttcaaaaactaagtttcctgtatgacatactttcattattctc |
321 |
Q |
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|||||||||||||||||||| |||||| ||||||||||| | |||||| |||||||||| ||||||| | |||||||||| ||||||||| |||||||| |
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| T |
1426309 |
gcttggatctttacttgaaccatttaagtggtaccataccgactacattgggcaagcttctaaaactacggttcctgtatg-catactttccttattctc |
1426407 |
T |
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| Q |
322 |
atatctttgatct |
334 |
Q |
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| T |
1426408 |
atatctttgatct |
1426420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 116 - 318
Target Start/End: Original strand, 1439138 - 1439340
Alignment:
| Q |
116 |
ttgcataaatctgaattttcttcccttttcaatggaaggggactttataataataatataacaggaacaatcccagaagagctaggaaatttaacaaact |
215 |
Q |
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||||||||||||||| |||||||||||||||| || |||| ||||| |||||||||||||||||||| ||||||||||||||||||||| || ||||||| |
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| T |
1439138 |
ttgcataaatctgaactttcttcccttttcaacggcagggaactttttaataataatataacaggaaaaatcccagaagagctaggaaaattgacaaact |
1439237 |
T |
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| Q |
216 |
tgggaagcttggatctttacttgaacaatttaaccggtaccataccaaatacattcggcaagcttcaaaaactaagtttcctgtatgacatactttcatt |
315 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||| |||||||| || || ||||||||||||| |||||||||||| ||||||| || |
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| T |
1439238 |
tggagagcttggatctttacttgaacaatttaagtggtaccataccgaatacattgggaaaccttcaaaaactaaaattcctgtatgacttactttcctt |
1439337 |
T |
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| Q |
316 |
att |
318 |
Q |
| |
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||| |
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| T |
1439338 |
att |
1439340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 124 - 336
Target Start/End: Original strand, 1433001 - 1433213
Alignment:
| Q |
124 |
atctgaattttcttcccttttcaatggaaggggactttataataataatataacaggaacaatcccagaagagctaggaaatttaacaaacttgggaagc |
223 |
Q |
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||||||| ||||| | | ||||||||| |||| |||| || ||||||||||||||||| ||||||||||||| |||||||||| |||||||| | ||| |
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| T |
1433001 |
atctgaactttctcctcatttcaatggcagggagctttctagtaataatataacaggaaaaatcccagaagagttaggaaatttgacaaacttagtgagc |
1433100 |
T |
|
| Q |
224 |
ttggatctttacttgaacaatttaaccggtaccataccaaatacattcggcaagcttcaaaaactaagtttcctgtatgacatactttcattattctcat |
323 |
Q |
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|||||||||||||||||| |||||| ||||||||||| |||||||| ||||| ||||| |||||| |||||||||||||||| ||||| |||||||||| |
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| T |
1433101 |
ttggatctttacttgaaccatttaagcggtaccatactgaatacattgggcaaccttcacaaactatgtttcctgtatgacatgctttccttattctcat |
1433200 |
T |
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| Q |
324 |
atctttgatctgc |
336 |
Q |
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||||||||||||| |
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| T |
1433201 |
atctttgatctgc |
1433213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 1425794 - 1425884
Alignment:
| Q |
27 |
tctctcaaatttgcagtacttgtaagttgtgaatcagatatgatattgttgagtaaatttgactgtttctgagcagattaagctcagccttg |
118 |
Q |
| |
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|||||||||||| ||||||||||||||||||| ||||||||| | |||||||| ||||||||||||| ||||||||||||| ||| ||||| |
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| T |
1425794 |
tctctcaaatttacagtacttgtaagttgtgattcagatatgttggtgttgagt-aatttgactgtttatgagcagattaagatcaaccttg |
1425884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 1438636 - 1438715
Alignment:
| Q |
27 |
tctctcaaatttgcagtacttgtaagttgtgaatcagatatgatattgttgagtaaatttgactgtttctgagcagattaagct |
110 |
Q |
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| T |
1438636 |
tctctcaaatttacataaattgtaagttgtgaat----tatgatattgttgagtaaatttgactggttctgagtatattaagct |
1438715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 1432881 - 1432965
Alignment:
| Q |
31 |
tcaaatttgcagtacttgtaagttgtgaatcagatatgatattgttgagtaaatttgactgtttctgagcagattaagctcagccttg |
118 |
Q |
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|||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||||||| || |||||||||| |||||| ||||| |
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| T |
1432881 |
tcaaatttgcagtacttgtaagctgtgactcagatatg-cattgt--agtaaatttgacttttattgagcagattgagctcaaccttg |
1432965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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