View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_12 (Length: 387)
Name: NF17496_low_12
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 371
Target Start/End: Original strand, 1792639 - 1792996
Alignment:
| Q |
3 |
ctccaaaattgtaacttttgtccacaatccccttgacttcaaagaaacttcaaaaaccccccataaaattgtcaagcgttgctcaattaccccatctgtt |
102 |
Q |
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| T |
1792639 |
ctccaaaattgtaacttttgtcaaaaatccccttgacttcaaagaatcttcaaaaaccccccataaaattgtcaagcgttgctcaattaccccatctgtt |
1792738 |
T |
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| Q |
103 |
tgttttggcaattaaactctatgacgtaacagttacatgtacatgtggcaactccacgtagactaaaccttatgccacgtcatttaccccacgt--acac |
200 |
Q |
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| T |
1792739 |
tgttttggcagttaaactctatgacgtaacagt------tacatgtggcagctccacgtggactgaaccttatgctacgtcatttatcctatgtacacac |
1792832 |
T |
|
| Q |
201 |
gtggactgaactcttgacctaataattgtgttgcatgtgtgactttcattgctgtttgtcacttcatctatgtaccaaaac-aaattcctcccaaatcta |
299 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| |
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| T |
1792833 |
gtggactgaactcttgacctaataattgtgttgcgtgtgtgactttcattgctgtttgtcacttcgtctatgtatcaaaacaaaattcctcccaaatcta |
1792932 |
T |
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| Q |
300 |
atacaatgttctttagaggccagaggggaccaagtgagattttcaaggcattctgcccaaaaggaatgattc |
371 |
Q |
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| T |
1792933 |
atacaatgttctttaga--------gggaccaagcgagattttcaaggcattctgcccaaaaggaatgattc |
1792996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 45576006 - 45576128
Alignment:
| Q |
62 |
cccataaaattgtcaagcgttgctcaattaccccatctgtttgttttggcaattaaactctatgacgtaacagttacatgtacatgtggcaactccacgt |
161 |
Q |
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| T |
45576006 |
cccataaaattgtcaaacgttagtcaattaccccctccgtttgtttgggctattaaaccctttgacatgacatttatatgtacatgtggcatctccatgt |
45576105 |
T |
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| Q |
162 |
agactaaaccttatgccacgtca |
184 |
Q |
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| T |
45576106 |
gggctaaactgtatgccacgtca |
45576128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 22919310 - 22919399
Alignment:
| Q |
95 |
catctgtttgttttggcaattaaactctatgacgtaacagttacatgtacatgtggcaactccacgtagactaaaccttatgccacgtca |
184 |
Q |
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| T |
22919310 |
catccgttggttttggctgttaaaccctatgacataacatttaattatacatgtggcacctccatgtagactgaacgttatgctacgtca |
22919399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 184
Target Start/End: Complemental strand, 31633686 - 31633547
Alignment:
| Q |
44 |
aagaaacttcaaaaaccccccataaaattgtcaagcgttgctcaattaccccatctgtttgttttggcaattaaactctatgacgtaacagttacatgta |
143 |
Q |
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|||||||||||||||||||| ||||||||||||| | || || |||||||| || |||||||| ||| |||||| || |||| | ||| ||| ||||| |
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| T |
31633686 |
aagaaacttcaaaaaccccc-ataaaattgtcaaacattagtccattaccccctccgtttgtttgggctgttaaaccctgtgacatgacaattatatgta |
31633588 |
T |
|
| Q |
144 |
catgtggcaactccacgtagactaaaccttatgccacgtca |
184 |
Q |
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| T |
31633587 |
catgtggcatctccatgtgggctaaaccgtatgccatgtca |
31633547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 184
Target Start/End: Complemental strand, 27915108 - 27914987
Alignment:
| Q |
63 |
ccataaaattgtcaagcgttgctcaattaccccatctgtttgttttggcaattaaactctatgacgtaacagttacatgtacatgtggcaactccacgta |
162 |
Q |
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|||| |||||||||| ||| ||||||||||| | | ||| |||||| ||||||| |||||||| ||||| ||||||||||||| |||||||| |
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| T |
27915108 |
ccattaaattgtcaaatgttagtcaattaccccctttatttactttggctgttaaactttatgacgtgttagttaactgtacatgtggcacctccacgtg |
27915009 |
T |
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| Q |
163 |
gactaaaccttatgccacgtca |
184 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
27915008 |
gactgaaccttatgccacgtca |
27914987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 21012484 - 21012413
Alignment:
| Q |
44 |
aagaaacttcaaaaaccccccataaaattgtcaagcgttgctcaattaccccatctgtttgttttggcaatta |
116 |
Q |
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| T |
21012484 |
aagaaacttcaaaa-ccccacttgaaattgtcaaacgttaatcaattaccccctctgtttgttttggctatta |
21012413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 29500069 - 29500137
Alignment:
| Q |
44 |
aagaaacttcaaaaaccccccataaaattgtcaagcgttgctcaattacccc-atctgtttgttttggc |
111 |
Q |
| |
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||||||||||| ||||| | |||||||||||||| |||| ||||||||||| || |||||||||||| |
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| T |
29500069 |
aagaaacttcataaacctctcataaaattgtcaaacgttagtcaattacccctctccgtttgttttggc |
29500137 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 45115003 - 45114917
Alignment:
| Q |
8 |
aaattgtaacttttgtccacaatccccttgacttcaaagaaacttcaaaaaccccccataaaattgtcaagcgttgctcaattacccc |
95 |
Q |
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| T |
45115003 |
aaattgtaactttcgtcaaaaacccccttgacttttaagaaacttc-aaaacccctcatgaaattgtcaaacgttagttaattacccc |
45114917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 50381936 - 50382028
Alignment:
| Q |
68 |
aaattgtcaagcgttgctcaattacccca-tctgtttgttttggcaattaaactctatgacgtaacagttacatgtacatgtggcaactccac |
159 |
Q |
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|||||||||| |||| ||||||||||| ||||||||||||||| |||||| |||||||| || || |||||||||||||| |||||| |
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| T |
50381936 |
aaattgtcaaacgttagtcaattacccccctctgtttgttttggctgttaaaccatatgacgtggcaaataaatgtacatgtggcacctccac |
50382028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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