View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17496_low_15 (Length: 360)
Name: NF17496_low_15
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_15 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 3106330 - 3106661
Alignment:
| Q |
16 |
caaaatgcctcctgaacttgaaaatttatannnnnnnnattcttatccttcaaaatgattgcattattgtggagcataagtgcaaaactttcactacctg |
115 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
3106330 |
caaaatgccccctgaacttgaaaatttatattttttttcttcttatccttcaaaatgactacattattgtggagcataagtgcaaaactttcactaccta |
3106429 |
T |
|
| Q |
116 |
tctgataagtttttgaacgatgttcacattggcataagttcatatgttattcaccgtaaatcttcataatatacacaactagagttttagagtggtatat |
215 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
3106430 |
tctgataagtttttgaacgatattcacattggcttaagttcacatgttattcactgtaaatcttcataatatacacaactagagttttagagtgatttat |
3106529 |
T |
|
| Q |
216 |
attgttatagtacgattcgaaagcattaactaagaacaagaacctgtaaaatcaaaagaaatgacaaattaatagtcaattacccctttctcatccatca |
315 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
3106530 |
attgttatagtatgatttgaaagcattaactaagaacaagaacctgtaaaatcaaaagaaatggcaaattaatagtcacttacccctttctcatccatca |
3106629 |
T |
|
| Q |
316 |
aaagattaatagttttgaggtctctatgtata |
347 |
Q |
| |
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||||||| | |||||||||||||||||||||| |
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|
| T |
3106630 |
aaagatttacagttttgaggtctctatgtata |
3106661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 21545281 - 21545253
Alignment:
| Q |
16 |
caaaatgcctcctgaacttgaaaatttat |
44 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
21545281 |
caaaatgcctcctgaacttgaaaatttat |
21545253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 180 - 347
Target Start/End: Complemental strand, 41222250 - 41222083
Alignment:
| Q |
180 |
cataatatacacaactagagttttagagtggtatatattgttatagtacgattcgaaagcattaactaagaacaagaacctgtaaaatcaaaagaaatga |
279 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41222250 |
cataatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattaactaagaacaagaacctgtaaaatcaaaagaaatga |
41222151 |
T |
|
| Q |
280 |
caaattaatagtcaattacccctttctcatccatcaaaagattaatagttttgaggtctctatgtata |
347 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| | ||| | |||||||||||||||||||| |
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| T |
41222150 |
caaattaatagtcacttacccctttctcatccatcaaaatactaacatttttgaggtctctatgtata |
41222083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 184
Target Start/End: Complemental strand, 41222555 - 41222423
Alignment:
| Q |
55 |
ttcttatccttcaaaatgattgcattattgtggagcataa-----gtgcaaaactttcactacctgtctgataagtttttgaacgatgttcacattggca |
149 |
Q |
| |
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|||||||||||| |||||| ||||||| | |||||||||| |||||||||||||||||||||| |||||||||||||||| ||||| ||||||||| |
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|
| T |
41222555 |
ttcttatccttcgaaatgactgcattactctggagcataaaataagtgcaaaactttcactacctgtttgataagtttttgaacaatgtttacattggca |
41222456 |
T |
|
| Q |
150 |
taagttcatatgttattcaccgtaaatcttcataa |
184 |
Q |
| |
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||||||| ||||||||||| |||||||||||||| |
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| T |
41222455 |
taagttc--atgttattcacggtaaatcttcataa |
41222423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 123 - 343
Target Start/End: Original strand, 48730983 - 48731209
Alignment:
| Q |
123 |
agtttttgaacgatgttcacattggcataagttcatatgttattcaccgtaaatcttcataatatacacaactagagttttagagtggtatatattgt-t |
221 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| | | |
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|
| T |
48730983 |
agtttttgaacgatgttcacatttgcatcagctcatatgttattcactgtaaatcttcataacatacacaactagagttttagagtggtttatattttat |
48731082 |
T |
|
| Q |
222 |
atagtacgattcgaaagcattaactaagaacaagaacctgtaaaatcaaaagaaatgacaaattaatagtcaattacccctttctcatccatcaaaaga- |
320 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
48731083 |
atagtatgatttgaaagcatcaactaagaacaagaacttgtaaaattcaaagaaatgacaaattaatagtcacttacccatttctcatccatcaaaagaa |
48731182 |
T |
|
| Q |
321 |
----ttaatagttttgaggtctctatg |
343 |
Q |
| |
|
|||| ||||||||||||| |||| |
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| T |
48731183 |
aagattaacagttttgaggtctgtatg |
48731209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 181 - 347
Target Start/End: Original strand, 8449959 - 8450125
Alignment:
| Q |
181 |
ataatatacacaactagagttttagagtggtatatattgttatagtacgattcgaaagcattaactaagaacaagaacctgtaaaatcaaaagaaatgac |
280 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8449959 |
ataatatacacaactacagttttagagtggtttatattgttatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaaatgac |
8450058 |
T |
|
| Q |
281 |
aaattaatagtcaattacccctttctcatccatcaaaagattaatagttttgaggtctctatgtata |
347 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
8450059 |
aaattaatagtcacttacccctttctcatccatcaaaagattagcagttttgaggtctcgatgtata |
8450125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 48730886 - 48730986
Alignment:
| Q |
55 |
ttcttatccttcaaaatgattgcattattgtggagcataagtgcaaaactttcactacctgtctgataagtttttgaacgatgttcacattggcataagt |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| |||| ||| |
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|
| T |
48730886 |
ttcttatccttcaaaatgattgcattattgtgaagcataagtgcaaaactttcactatctgttttataagtttttgaacgatgttcacatttgcatcagt |
48730985 |
T |
|
| Q |
155 |
t |
155 |
Q |
| |
|
| |
|
|
| T |
48730986 |
t |
48730986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 8449720 - 8449800
Alignment:
| Q |
101 |
aactttcactacctgtctgataagtttttgaacgatgttcacattggcataagttcatatgttattcaccgtaaatcttca |
181 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| | || || ||||||||||| |
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|
| T |
8449720 |
aactttgactacctgttggataagtttttgaacgatgttcacattgacataagttcatatgatgtttactgtaaatcttca |
8449800 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 23703751 - 23703722
Alignment:
| Q |
16 |
caaaatgcctcctgaacttgaaaatttata |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
23703751 |
caaaatgcctcctgaacttgaaaatttata |
23703722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 180 - 347
Target Start/End: Complemental strand, 6869641 - 6869474
Alignment:
| Q |
180 |
cataatatacacaactagagttttagagtggtatatattgttatagtacgattcgaaagcattaactaagaacaagaacctgtaaaatcaaaagaaatga |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
6869641 |
cataatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattacctaagaacaagaacttgtaaaatcaaaagaaatga |
6869542 |
T |
|
| Q |
280 |
caaattaatagtcaattacccctttctcatccatcaaaagattaatagttttgaggtctctatgtata |
347 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
6869541 |
taaattaatagtcacttacccctttctaatccatcaaaagattaacagttttgaagtctctatgtata |
6869474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 55 - 184
Target Start/End: Complemental strand, 6869953 - 6869824
Alignment:
| Q |
55 |
ttcttatccttcaaaatgattgcattattgtggagcataagtgcaaaactttcactacctgtctgataagtttttgaacgatgttcacattggcataagt |
154 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | ||||||| |
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|
| T |
6869953 |
ttcttatctttcaaaatgactgcattattgtggagcataagtgcaaaactttcactacctgtttgataaatttttgaacgatgttcacatagacataagt |
6869854 |
T |
|
| Q |
155 |
tcatatgttattcaccgtaaatcttcataa |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6869853 |
tcatatgttattcaccgtaaatcttcataa |
6869824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 34977 - 34948
Alignment:
| Q |
16 |
caaaatgcctcctgaacttgaaaatttata |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34977 |
caaaatgcctcctgaacttgaaaatttata |
34948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 1613627 - 1613656
Alignment:
| Q |
16 |
caaaatgcctcctgaacttgaaaatttata |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1613627 |
caaaatgcctcctgaacttgaaaatttata |
1613656 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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