View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17496_low_17 (Length: 346)

Name: NF17496_low_17
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17496_low_17
NF17496_low_17
[»] chr1 (1 HSPs)
chr1 (37-333)||(37218484-37218777)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 37 - 333
Target Start/End: Original strand, 37218484 - 37218777
Alignment:
Q  37 aatgggattaaaactgttacctgctacttaatgttggggaagtattaccattagtaattatagaagcacatgagtttgaaagttgttcaaaattgcttcc 136  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |   ||||||||||||||||||||||||||||||||| ||||||||    
T  37218484 aatggcattaaaactgttacctgctacttaatgttggggaagtattactattact---tatagaagcacatgagtttgaaagttgttcaaagttgcttcc 37218580  T
Q  137 atgtgtgtcggatttgtgtacttgctgtaagacatgagcttgatgttggttgctcaaaccatccagacaagtttctccattaatgtcattcaattcgaca 236  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37218581 atgtgtgtcggatttgtgtacttgttgtgagacatgagcttgatgttggttgctcaaaccatccagacaagtttctccattaatgtcattcaattcgaaa 37218680  T
Q  237 tcacataggtttattatttgatcatagagtggcaaactagctcttgcacgtttctttgttcttatattatggtagttatctatctcatttcctcttc 333  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37218681 tcacatagatttattatttgatcatagagtggcaaactagctcttgcacgtttctttgttcttatattatggtagttatctatctcatttcctcttc 37218777  T

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