View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_19 (Length: 339)
Name: NF17496_low_19
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 5625329 - 5625009
Alignment:
| Q |
1 |
atctgttcttggaagaatgaacattagggcttggatggcttttgtccctctttggctcattttctcttacactgttggtgcttttagtatatggggtggt |
100 |
Q |
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| T |
5625329 |
atctgttcttggaagaatgaacattagggcttggatggcttttgtacctctttggctcattttctcttacactgttggtgcttttagtatatggggtggt |
5625230 |
T |
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| Q |
101 |
ggatttttgtatcattggggtgtcattgatttctctggtggctatgttattcatctttcttctggaattggtggattcactgcagcttattgggtaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5625229 |
ggatttttgtatcattggggtgtcattgatttctctggtggctatgttattcatctttcttctggaattggtggattcactgcagcttattgggtaaact |
5625130 |
T |
|
| Q |
201 |
ttgatgttttgaaaatagtgaaattatcatagtttttggttgtgatttaattgcaaaaactctcgaataattttgttgttgcaagaacaatcatggtttt |
300 |
Q |
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| T |
5625129 |
ttgatgttttgaaaatagtgaaattatcatagtttttggttgtgatttaattgcaaaaactctcgaataattttgttgttgcaagaacaatcatggtttt |
5625030 |
T |
|
| Q |
301 |
taattgcgatcatgttttcgc |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
5625029 |
taattgcgatcatgttttcgc |
5625009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 25671117 - 25670922
Alignment:
| Q |
2 |
tctgttcttggaagaatgaacattagggcttggatggcttttgtccctctttggctcattttctcttacactgttggtgcttttagtatatggggtggtg |
101 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||| | |||||||||| |
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| T |
25671117 |
tctgttcttggaagaatgaatattaaagcttggatggcttttgttcctctttggcttattttttcttatactgttggtgcttttagtctttggggtggtg |
25671018 |
T |
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| Q |
102 |
gatttttgtatcattggggtgtcattgatttctctggtggctatgttattcatctttcttctggaattggtggattcactgcagcttattgggtaa |
197 |
Q |
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||||| | |||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
25671017 |
gatttctttatcattggggtgtgattgattattctggtggttatgttattcatctttcttctggaattgctggtttcactgctgcttattgggtaa |
25670922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 39726555 - 39726388
Alignment:
| Q |
28 |
ggcttggatggcttttgtccctctttggctcattttctcttacactgttggtgcttttagtatatggggtggtggatttttgtatcattggggtgtcatt |
127 |
Q |
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|||||||||| ||||| || |||||| | | ||| ||||| ||| |||||||||||||| | ||||||||||| || |||| ||| |||||||| || |
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| T |
39726555 |
ggcttggatgatgtttgtgccactttggttaactttttcttatactattggtgcttttagtttgtggggtggtggtttcttgtttcaatggggtgttatg |
39726456 |
T |
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| Q |
128 |
gatttctctggtggctatgttattcatctttcttctggaattggtggattcactgcagcttattgggt |
195 |
Q |
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|||| |||||||| ||||||||||||||||||||||| |||| ||| ||||| || ||||||||||| |
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| T |
39726455 |
gattattctggtggttatgttattcatctttcttctgggattgctggtttcaccgctgcttattgggt |
39726388 |
T |
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