View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_22 (Length: 306)
Name: NF17496_low_22
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 24829719 - 24830000
Alignment:
| Q |
18 |
actaggaggacaaaatgtgtgtcatggaatcaaattgtgaatgcaaagtaagatt-gcttataatagaccatcaatgaatccagcttttctctagatcaa |
116 |
Q |
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| T |
24829719 |
actaggaggacaaaatgtgtgtcatggaatcaaattgtgaatgcaaagtaagatttgcttataatagaccatcaatgaatccagcttttctctagatcaa |
24829818 |
T |
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| Q |
117 |
gtcatagcaaaagcttttaaagcattatactgtgcttttatcaagataaaaccttaaataggaaccccttttattaatgcacatctcacacattgattta |
216 |
Q |
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| T |
24829819 |
gtcatagcaaaagcttttaaagcgttataccgtgcttttatcaagataaaaccttaaataggaatcccttttattaatgcacatctcacacattgattta |
24829918 |
T |
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| Q |
217 |
agtacttgcaaataaatgaaattagaatatctcaaaagaggggtttaactgtacctcaagattttcactttcatcttcatct |
298 |
Q |
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| T |
24829919 |
agtacttgcaaataaatgaaattagaatatctcaaaagaggggtttaactgtacctcaagatttccactttcatcttcatct |
24830000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 35 - 298
Target Start/End: Complemental strand, 23248610 - 23248354
Alignment:
| Q |
35 |
tgtgtcatggaatcaaattgtgaatgcaaagtaagattgcttataatagaccatcaatgaatccagcttttctctagatcaagtcatagcaaaagctttt |
134 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
23248610 |
tgtgtcatggaatcaaactgtgaatgcaaagtaagattgcttaaaatagaccatcaatgaattcagcttttctctagattcagtcatagcaaaagctttt |
23248511 |
T |
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| Q |
135 |
aaagcattatactgtgcttttatcaagataaaaccttaaataggaaccccttttattaatgcacatctcacacattgatttaagtacttgcaaataaatg |
234 |
Q |
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| T |
23248510 |
aaagcattataccgtccttctatcaagataaaaccttaaataggaacccccattatttatgcaaatttgaaatatag-ctcaagtactgacaaa-aaagg |
23248413 |
T |
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| Q |
235 |
aaattagaatatctcaaaagaggggtttaactgtacctcaagattttcactttcatcttcatct |
298 |
Q |
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||||||||||||||||||| |||| | ||||||||||||||| ||||| ||||||||||| |
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| T |
23248412 |
aaattagaatatctcaaaa-----gtttgattgtacctcaagatttccacttccatcttcatct |
23248354 |
T |
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