View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_25 (Length: 294)
Name: NF17496_low_25
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 37961271 - 37961523
Alignment:
| Q |
17 |
tcagctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttatgggaatttggagggacgatgaggttagaggaaaaaggga |
116 |
Q |
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| T |
37961271 |
tcagctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttttgggaatttggagggacgatgaggttagaggaaaaaggga |
37961370 |
T |
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| Q |
117 |
agaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacg |
216 |
Q |
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| T |
37961371 |
agaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacg |
37961470 |
T |
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| Q |
217 |
ttgaattgggtgacaataaaaccatggtatgtcgaagaaagttaagggtagaa |
269 |
Q |
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| T |
37961471 |
ttgaattgggtgacaataaaaccatggtatgtcgaagaaagttaagggtagaa |
37961523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 37906797 - 37906556
Alignment:
| Q |
17 |
tcagctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttatgggaatttggagggacgatgaggttagaggaaaaaggga |
116 |
Q |
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| T |
37906797 |
tcagctacagtgaaggaaatagagtcttcatcaaggtaacgtatgaaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaa |
37906698 |
T |
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| Q |
117 |
agaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacg |
216 |
Q |
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| T |
37906697 |
agaagtgttgaagggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatacg |
37906598 |
T |
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| Q |
217 |
ttgaa---ttgggtgacaataaaaccatggtatgtcgaagaa |
255 |
Q |
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| T |
37906597 |
tttaacagtgggttgacagtaaaaccatgaaatgtcgaagaa |
37906556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 37914960 - 37914759
Alignment:
| Q |
17 |
tcagctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttatgggaatttggagggacgatgaggttagaggaaaaaggga |
116 |
Q |
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| T |
37914960 |
tcagctatggtgaaggagatagagtcttcatcaaggtaacgtatgaaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaa |
37914861 |
T |
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| Q |
117 |
agaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacg |
216 |
Q |
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| T |
37914860 |
agaagtgttgaagggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcg |
37914761 |
T |
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| Q |
217 |
tt |
218 |
Q |
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|| |
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| T |
37914760 |
tt |
37914759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 116 - 255
Target Start/End: Complemental strand, 3782967 - 3782828
Alignment:
| Q |
116 |
aagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatac |
215 |
Q |
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||||||||| |||||| |||||||| ||||||||||||||||||||| ||||||| || || |||||||||||||||||||| |||||||||||||| | |
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| T |
3782967 |
aagaagtgttcgagggtgatggaaagagagtgtttgagaatgggaagtattgtttggagaaagtgatgagttggatgaggaaagtggtagaagaagatgc |
3782868 |
T |
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| Q |
216 |
gttgaattgggtgacaataaaaccatggtatgtcgaagaa |
255 |
Q |
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| T |
3782867 |
gtttaatggttcgacagcaaaaccatggaatgtccaagaa |
3782828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 4957761 - 4957855
Alignment:
| Q |
101 |
ttagaggaaaaagggaagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgagg |
195 |
Q |
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|||||||| ||||||||||| ||| |||| || | |||||| |||| ||||||||| || |||| ||||||||||| || || |||| |||||| |
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| T |
4957761 |
ttagaggagaaagggaagaaatgttggagagtgagggaaagagagtttttgagaattggtagtgaagtttgaaggaagtgttgtgttgaatgagg |
4957855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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