View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_26 (Length: 289)
Name: NF17496_low_26
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 2146261 - 2145990
Alignment:
| Q |
1 |
atgatcccaatgattgtccaccaagaaggttccttcaaaacatagacctcaacgatgattcacttttccaacgggacagactttatcatagtactcatta |
100 |
Q |
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| T |
2146261 |
atgatcccaatgattgtccaccaagaaggttccttcaaaacatagacctcaacgatgattcacttttccaacgggacagactttatcatagtactcatta |
2146162 |
T |
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| Q |
101 |
tgaaaacgtaacatttctcaattgtactaaaaatgcaaaggaaccaatgtttgatcatcttcctaataatataccttgtctaagcaatgacaactatttg |
200 |
Q |
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| T |
2146161 |
tgaaaacgtaacatttctcaattgtactaaaaatgcaaaggaaccaatgtttgatcatcttcctaataatataccttgtctaagcaatgacaactatttg |
2146062 |
T |
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| Q |
201 |
atcatgtatgcgttacaatcacttcttggtaatttatggagtccatcgtgtcatgagattggatctgctaag |
272 |
Q |
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| T |
2146061 |
atcatgtatgcgttacaatcacttcttggtaatttgtggagtccatcgtgtcatgagattggatctgctaag |
2145990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 2142133 - 2141861
Alignment:
| Q |
1 |
atgatcccaatgattgtccaccaagaaggttccttcaaaacatagacctcaacgatgattcacttttccaacgggacagactttatcatagtactcatta |
100 |
Q |
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| T |
2142133 |
atgatcctaatggttgttcaccaagacggttccttgaa--catagacctcaacaatgattcacctttccaatgggacagatttgatcatagtactcatta |
2142036 |
T |
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| Q |
101 |
t---gaaaacgtaacatttctcaattgtactaaaaat---gcaaaggaaccaatgtttgatcatcttcctaataatataccttgtctaagcaatgacaac |
194 |
Q |
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| T |
2142035 |
ttatgaaaacgtaacatttctcaactgtactaccaattttgcaaacggaccaatgtttgatgatcttcctaata---taccttgtctaagcaatgacaag |
2141939 |
T |
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| Q |
195 |
tatttgatcatgtatgcgttacaatcacttcttggtaatttatggagtccatcgtgtcatgagattggatctgctaag |
272 |
Q |
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| T |
2141938 |
tattcgatcatgtatacgttacaatcacctcttagtaatttgtggagtccatcgtgtcatgagattcgatcagctaag |
2141861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 2151669 - 2151483
Alignment:
| Q |
3 |
gatcccaatgattgtccaccaagaaggttccttcaaaacat------agacctcaacgatgattcacttttccaacgggacagactttatcatagtactc |
96 |
Q |
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| T |
2151669 |
gatctcaatgattgtccaccaagaaggttcattcaaaacatagacatagacatcgacgatgattcacctttccaattggacaagtcttatgaaaatgacc |
2151570 |
T |
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| Q |
97 |
attatgaaaacgtaacatttctcaattgtactaaaaa---tgcaaaggaaccaatgtttgatcatcttcctaataatataccttgtctaagca |
186 |
Q |
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| T |
2151569 |
attatgaaaacgtaatatttctcaattgtaccaacaatgttgaaaaggaacca---tttgatgatcttcc---taatataccttgtctaagca |
2151483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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