View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_27 (Length: 289)
Name: NF17496_low_27
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 9998535 - 9998273
Alignment:
| Q |
16 |
caaaagactagtaaaaaacatagtttaccatgtcaataccggcattcactccggcttcaattgaaaatgtgtagttagcatgaggaggtgaagttatcct |
115 |
Q |
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| T |
9998535 |
caaaagactagtaaaaaacatagtttaccatgtcaataccggcattcactccggcttcaattgaaaatgtgtagttagcatgaggaggtgaagttatcct |
9998436 |
T |
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| Q |
116 |
gtcgattccctcccaatctgatatgacaaaaccctgcatgaaaacatagaattttaagcatatactaatatgatgattgataaacaaacaattttagggt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9998435 |
gtcgattccctcccaatctgatatgacaaaaccctgcattaaaacatccaattttaagcatatactaatatgatgattgataaacaaacaattttagggt |
9998336 |
T |
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| Q |
216 |
taagttaatatacaattatttatgcaataatatattgccacctattttacaccgtcatcctat |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9998335 |
taagttaatatacaattatttatgcaataatatattgccacctattttacaccgtcatcctat |
9998273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 10004251 - 10003994
Alignment:
| Q |
16 |
caaaagactagtaaaaaacatagtttaccatgtcaataccggcattcactccggcttcaattgaaaatgtgtagttagcatgaggaggtgaagttatcct |
115 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10004251 |
caaaagattagtaaaattcatagtttaccatgtcaataccggcattcactccggcttcaattgaaaatgtgtagttagcatgaggaggtgaagttatcct |
10004152 |
T |
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| Q |
116 |
gtcgattccctcccaatctgatatgacaaaaccctgcatgaaaacatagaattttaagcatatactaatatgatgattgataaacaaacaattttagggt |
215 |
Q |
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| T |
10004151 |
gtcaattcccttccaatctgatatgacaaaaccctgcataaaaacatagaattttaagcatatactaatatgatgatcgataaataaacaatttcaggct |
10004052 |
T |
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| Q |
216 |
taagttaatatacaattatttatgcaataatatattgccacctattttacaccgtcat |
273 |
Q |
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| T |
10004051 |
taagttaatatacaattatttatgctataatatatagtcacctattttacacagtcat |
10003994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 34 - 213
Target Start/End: Complemental strand, 9991362 - 9991183
Alignment:
| Q |
34 |
catagtttaccatgtcaataccggcattcactccggcttcaattgaaaatgtgtagttagcatgaggaggtgaagttatcctgtcgattccctcccaatc |
133 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||||||||||| || |||||||||||||| |||||||||||||| |
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| T |
9991362 |
catagtttaccatgtcaataccggcattcactccagcttcaattgaataggtgtaattagcatgaggcggggaagttatcctgtcaattccctcccaatc |
9991263 |
T |
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| Q |
134 |
tgatatgacaaaaccctgcatgaaaacatagaattttaagcatatactaatatgatgattgataaacaaacaattttagg |
213 |
Q |
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| T |
9991262 |
tgatatgacaaaaccctgcatgaaaacatataattttaggcgtatactaatatgatgattgataaacaaacaattttagg |
9991183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 34 - 184
Target Start/End: Complemental strand, 10012843 - 10012693
Alignment:
| Q |
34 |
catagtttaccatgtcaataccggcattcactccggcttcaattgaaaatgtgtagttagcatgaggaggtgaagttatcctgtcgattccctcccaatc |
133 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10012843 |
catagtttaccatgtcaagaccggcattcaccgaggcttcaattgaatatgtgtagttagcatgaggaggtgaagttatcctgtcaattccctcccaatc |
10012744 |
T |
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| Q |
134 |
tgatatgacaaaaccctgcatgaaaacatagaattttaagcatatactaat |
184 |
Q |
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| T |
10012743 |
tgatatggtaaaaccctaaaggaaaacaaagaattttaagcatatactaat |
10012693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 35992782 - 35992716
Alignment:
| Q |
87 |
tagttagcatgaggaggtgaagttatcctgtcgattccctcccaatctgatatgacaaaaccctgca |
153 |
Q |
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||||||||||||||||| || || || | ||| || |||| |||||||||||||||||||||||||| |
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| T |
35992782 |
tagttagcatgaggaggagaggtaattcggtcaataccctgccaatctgatatgacaaaaccctgca |
35992716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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