View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17496_low_29 (Length: 282)

Name: NF17496_low_29
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17496_low_29
NF17496_low_29
[»] chr5 (4 HSPs)
chr5 (35-116)||(15514441-15514522)
chr5 (57-100)||(7402962-7403005)
chr5 (68-101)||(7309686-7309719)
chr5 (205-245)||(15514312-15514352)
[»] chr4 (1 HSPs)
chr4 (35-101)||(2386797-2386870)
[»] chr2 (1 HSPs)
chr2 (57-100)||(1691075-1691118)


Alignment Details
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 15514522 - 15514441
Alignment:
Q  35 atttgtgcaaaataaagagaaataaaatatttccacttgtttaaaagatttattttgtcttattttggatatcttaagcaac 116  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15514522 atttgtgcaaaattaagagaaataaaatattaccatttgtttaaaagatttattttgtcttattttggatatcttaagcaac 15514441  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 7403005 - 7402962
Alignment:
Q  57 taaaatatttccacttgtttaaaagatttattttgtcttatttt 100  Q
    ||||| ||| |||||||||||| |||||||||||||||||||||    
T  7403005 taaaagattaccacttgtttaatagatttattttgtcttatttt 7402962  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 7309686 - 7309719
Alignment:
Q  68 cacttgtttaaaagatttattttgtcttattttg 101  Q
    |||||||||||||||||||||| |||||||||||    
T  7309686 cacttgtttaaaagatttatttggtcttattttg 7309719  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 15514352 - 15514312
Alignment:
Q  205 ggtcaattacagataaatttgactctttgaagtgttattaa 245  Q
    ||||||||||| || ||||||||||||||||||||| ||||    
T  15514352 ggtcaattacaaatgaatttgactctttgaagtgttgttaa 15514312  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 2386797 - 2386870
Alignment:
Q  35 atttgtgcaaaataaagagaaataaaatattt-------ccacttgtttaaaagatttattttgtcttattttg 101  Q
    ||||||||||||| |||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  2386797 atttgtgcaaaatcaagagaaataaaatattcaagattaccacttgtttaaaagatttattttgtcttattttg 2386870  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 1691075 - 1691118
Alignment:
Q  57 taaaatatttccacttgtttaaaagatttattttgtcttatttt 100  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||    
T  1691075 taaaagattaccacttgtttaaaagatttattttgtcttatttt 1691118  T

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