View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17496_low_3 (Length: 523)

Name: NF17496_low_3
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17496_low_3
NF17496_low_3
[»] chr1 (45 HSPs)
chr1 (18-329)||(1458065-1458376)
chr1 (356-523)||(52839573-52839740)
chr1 (356-523)||(5832276-5832444)
chr1 (356-520)||(33703417-33703580)
chr1 (413-523)||(26199680-26199790)
chr1 (360-523)||(8893340-8893503)
chr1 (360-523)||(22344816-22344979)
chr1 (366-523)||(27469612-27469769)
chr1 (356-523)||(44562653-44562820)
chr1 (356-523)||(630688-630856)
chr1 (412-523)||(11121075-11121186)
chr1 (356-519)||(12147956-12148119)
chr1 (356-523)||(21326516-21326683)
chr1 (356-523)||(23320483-23320650)
chr1 (356-523)||(44513906-44514060)
chr1 (412-523)||(2350721-2350832)
chr1 (445-520)||(28213180-28213255)
chr1 (412-523)||(37684994-37685105)
chr1 (412-523)||(37700412-37700523)
chr1 (360-523)||(29067097-29067259)
chr1 (360-519)||(33177506-33177664)
chr1 (430-523)||(12967636-12967729)
chr1 (356-523)||(4564561-4564726)
chr1 (360-519)||(36621399-36621558)
chr1 (360-499)||(40488325-40488464)
chr1 (430-519)||(10264826-10264915)
chr1 (365-523)||(38646636-38646794)
chr1 (360-497)||(23257135-23257272)
chr1 (412-520)||(38644704-38644812)
chr1 (431-523)||(48654945-48655037)
chr1 (445-520)||(46589279-46589354)
chr1 (360-523)||(15698247-15698408)
chr1 (360-523)||(15276350-15276517)
chr1 (445-520)||(14717177-14717252)
chr1 (445-523)||(45659146-45659224)
chr1 (445-523)||(47392270-47392347)
chr1 (423-516)||(22032002-22032095)
chr1 (366-523)||(32539093-32539251)
chr1 (412-477)||(34566787-34566852)
chr1 (445-519)||(900226-900299)
chr1 (412-484)||(49651943-49652015)
chr1 (364-403)||(45659093-45659132)
chr1 (445-523)||(6212818-6212896)
chr1 (360-398)||(14717272-14717310)
chr1 (360-396)||(6212917-6212953)
[»] chr4 (52 HSPs)
chr4 (356-523)||(46728824-46728991)
chr4 (356-519)||(15729889-15730052)
chr4 (358-523)||(51646138-51646304)
chr4 (356-523)||(16991915-16992082)
chr4 (356-523)||(23067752-23067919)
chr4 (358-523)||(43156821-43156986)
chr4 (356-500)||(38434641-38434786)
chr4 (360-523)||(4634330-4634493)
chr4 (434-516)||(29474239-29474321)
chr4 (356-523)||(46716798-46716965)
chr4 (360-519)||(2945184-2945343)
chr4 (360-523)||(9661900-9662063)
chr4 (360-519)||(12519703-12519862)
chr4 (425-523)||(14346543-14346641)
chr4 (360-523)||(14542416-14542579)
chr4 (357-523)||(1124986-1125151)
chr4 (438-523)||(40859799-40859884)
chr4 (412-523)||(4959477-4959588)
chr4 (412-523)||(29577026-29577137)
chr4 (412-523)||(46775761-46775871)
chr4 (421-523)||(30416497-30416599)
chr4 (366-516)||(7242680-7242830)
chr4 (366-523)||(32189036-32189190)
chr4 (357-519)||(31601264-31601429)
chr4 (445-523)||(3169558-3169636)
chr4 (360-519)||(9474447-9474606)
chr4 (421-523)||(26576407-26576508)
chr4 (360-523)||(37869321-37869484)
chr4 (360-519)||(38170068-38170226)
chr4 (356-470)||(40859689-40859803)
chr4 (360-523)||(28990345-28990508)
chr4 (415-500)||(29589288-29589373)
chr4 (356-470)||(30416578-30416692)
chr4 (445-520)||(1645462-1645537)
chr4 (412-523)||(6408542-6408653)
chr4 (412-523)||(9781712-9781821)
chr4 (416-519)||(42972141-42972244)
chr4 (445-523)||(6789780-6789858)
chr4 (356-519)||(20961494-20961654)
chr4 (360-523)||(41486622-41486785)
chr4 (415-520)||(49066786-49066891)
chr4 (412-523)||(1657470-1657581)
chr4 (356-399)||(29474382-29474425)
chr4 (448-523)||(30470027-30470102)
chr4 (421-520)||(35658438-35658536)
chr4 (356-403)||(53903653-53903699)
chr4 (360-519)||(46386682-46386840)
chr4 (453-523)||(52555644-52555714)
chr4 (445-523)||(53903713-53903791)
chr4 (445-519)||(54420649-54420723)
chr4 (412-523)||(34115560-34115666)
chr4 (412-523)||(50003080-50003191)
[»] chr7 (43 HSPs)
chr7 (356-523)||(28015400-28015567)
chr7 (356-520)||(5024963-5025126)
chr7 (356-523)||(38649262-38649428)
chr7 (360-523)||(40775314-40775477)
chr7 (412-523)||(772542-772653)
chr7 (360-520)||(13008580-13008740)
chr7 (360-520)||(47749781-47749941)
chr7 (356-523)||(9933890-9934053)
chr7 (358-523)||(26017562-26017727)
chr7 (356-488)||(43483643-43483775)
chr7 (360-523)||(135049-135212)
chr7 (356-519)||(30992731-30992894)
chr7 (357-523)||(16263432-16263589)
chr7 (367-523)||(23177487-23177642)
chr7 (445-523)||(39090220-39090298)
chr7 (356-523)||(24470438-24470603)
chr7 (356-523)||(24475386-24475551)
chr7 (356-523)||(49166970-49167135)
chr7 (366-523)||(23732297-23732454)
chr7 (356-523)||(10250387-10250552)
chr7 (360-523)||(7985939-7986102)
chr7 (445-523)||(22751570-22751648)
chr7 (412-523)||(43807054-43807165)
chr7 (356-523)||(8611528-8611693)
chr7 (356-403)||(39090159-39090206)
chr7 (448-523)||(46918535-46918609)
chr7 (445-523)||(11001975-11002053)
chr7 (445-523)||(40476839-40476917)
chr7 (360-523)||(44681508-44681670)
chr7 (412-477)||(14733999-14734064)
chr7 (463-523)||(37890393-37890453)
chr7 (432-523)||(8319434-8319525)
chr7 (412-523)||(42490802-42490913)
chr7 (412-523)||(29804583-29804690)
chr7 (366-523)||(33530379-33530529)
chr7 (445-523)||(36350300-36350378)
chr7 (445-519)||(41748435-41748509)
chr7 (423-523)||(34893221-34893319)
chr7 (445-497)||(37399730-37399782)
chr7 (364-403)||(35141775-35141814)
chr7 (356-399)||(47156437-47156480)
chr7 (360-398)||(15124009-15124047)
chr7 (412-458)||(32312666-32312712)
[»] chr5 (41 HSPs)
chr5 (356-523)||(41554530-41554697)
chr5 (356-523)||(33486473-33486640)
chr5 (412-523)||(20270813-20270924)
chr5 (356-523)||(4726832-4726999)
chr5 (412-523)||(22397452-22397563)
chr5 (360-523)||(2415447-2415610)
chr5 (360-523)||(15710589-15710752)
chr5 (357-523)||(34843960-34844126)
chr5 (356-523)||(8812056-8812222)
chr5 (356-519)||(18472634-18472795)
chr5 (360-519)||(31645876-31646035)
chr5 (364-518)||(41358090-41358244)
chr5 (412-523)||(40774859-40774971)
chr5 (412-523)||(6647817-6647928)
chr5 (412-523)||(13007791-13007901)
chr5 (412-523)||(13079244-13079354)
chr5 (360-496)||(34873908-34874044)
chr5 (360-523)||(6887082-6887245)
chr5 (356-523)||(4070597-4070761)
chr5 (412-523)||(13080252-13080364)
chr5 (412-520)||(9034849-9034957)
chr5 (356-519)||(14910584-14910735)
chr5 (412-523)||(29310258-29310369)
chr5 (412-523)||(41988251-41988362)
chr5 (356-523)||(28618647-28618812)
chr5 (360-523)||(32390551-32390714)
chr5 (360-523)||(34866474-34866637)
chr5 (421-515)||(37425132-37425226)
chr5 (356-520)||(5378345-5378509)
chr5 (437-523)||(8957330-8957416)
chr5 (412-477)||(40565105-40565170)
chr5 (412-519)||(6074644-6074751)
chr5 (360-520)||(19645948-19646108)
chr5 (358-470)||(37425041-37425153)
chr5 (449-523)||(32387601-32387674)
chr5 (445-523)||(35906401-35906479)
chr5 (412-523)||(20146123-20146231)
chr5 (360-442)||(28500764-28500846)
chr5 (412-519)||(10924042-10924148)
chr5 (465-519)||(28500841-28500895)
chr5 (448-517)||(34893854-34893923)
[»] chr8 (42 HSPs)
chr8 (358-523)||(37659011-37659176)
chr8 (356-523)||(16937243-16937410)
chr8 (358-523)||(3925594-3925758)
chr8 (412-517)||(12248624-12248729)
chr8 (358-523)||(32256625-32256790)
chr8 (360-523)||(9270068-9270231)
chr8 (356-523)||(10042815-10042982)
chr8 (412-523)||(8054711-8054822)
chr8 (360-523)||(26937572-26937735)
chr8 (360-523)||(44295363-44295526)
chr8 (412-517)||(5917652-5917757)
chr8 (412-523)||(12244120-12244231)
chr8 (437-523)||(31712980-31713066)
chr8 (360-523)||(32412837-32413000)
chr8 (358-523)||(41996590-41996753)
chr8 (364-520)||(3680974-3681130)
chr8 (412-523)||(14327578-14327689)
chr8 (356-523)||(2628956-2629121)
chr8 (360-523)||(16938175-16938338)
chr8 (412-523)||(5457170-5457281)
chr8 (360-516)||(31874131-31874287)
chr8 (412-523)||(32061893-32062004)
chr8 (358-523)||(13864404-13864569)
chr8 (412-523)||(23766838-23766950)
chr8 (356-520)||(32104745-32104909)
chr8 (360-515)||(5989677-5989832)
chr8 (360-523)||(15665586-15665749)
chr8 (356-515)||(16996801-16996958)
chr8 (360-523)||(9992712-9992877)
chr8 (370-523)||(7281031-7281184)
chr8 (356-523)||(37129579-37129742)
chr8 (413-519)||(13977502-13977614)
chr8 (412-523)||(26582793-26582903)
chr8 (360-523)||(36545685-36545848)
chr8 (430-523)||(11298664-11298757)
chr8 (412-477)||(18190794-18190859)
chr8 (412-523)||(1215245-1215354)
chr8 (412-523)||(7269368-7269479)
chr8 (412-523)||(14115732-14115843)
chr8 (445-514)||(31147744-31147811)
chr8 (412-517)||(17019217-17019322)
chr8 (412-517)||(17549654-17549759)
[»] chr2 (55 HSPs)
chr2 (358-523)||(19580906-19581071)
chr2 (356-523)||(7443470-7443637)
chr2 (356-523)||(7640260-7640427)
chr2 (356-523)||(26491346-26491511)
chr2 (356-523)||(15673872-15674032)
chr2 (412-523)||(24500586-24500697)
chr2 (360-519)||(19953617-19953776)
chr2 (360-523)||(25622948-25623112)
chr2 (421-523)||(10589203-10589305)
chr2 (360-519)||(16879873-16880032)
chr2 (360-519)||(16992006-16992165)
chr2 (356-523)||(25516537-25516702)
chr2 (360-523)||(25771492-25771655)
chr2 (360-523)||(27024043-27024206)
chr2 (356-523)||(37883696-37883863)
chr2 (363-519)||(13268623-13268778)
chr2 (416-523)||(44951522-44951629)
chr2 (437-523)||(4878640-4878726)
chr2 (356-523)||(27191241-27191406)
chr2 (356-523)||(27841055-27841220)
chr2 (356-519)||(29734233-29734396)
chr2 (356-522)||(40125432-40125598)
chr2 (356-523)||(43566918-43567083)
chr2 (364-512)||(29812530-29812678)
chr2 (364-520)||(9715451-9715607)
chr2 (421-520)||(43929207-43929306)
chr2 (360-523)||(5930470-5930633)
chr2 (360-523)||(25237235-25237393)
chr2 (356-517)||(38822118-38822276)
chr2 (412-519)||(5071278-5071385)
chr2 (437-516)||(11550507-11550586)
chr2 (360-471)||(3390479-3390590)
chr2 (356-523)||(6089936-6090100)
chr2 (356-523)||(44167615-44167780)
chr2 (360-483)||(41841997-41842118)
chr2 (423-523)||(17118718-17118817)
chr2 (421-496)||(17068846-17068921)
chr2 (445-523)||(3465061-3465139)
chr2 (445-523)||(16720752-16720830)
chr2 (463-517)||(20036532-20036586)
chr2 (465-523)||(28228374-28228432)
chr2 (356-523)||(36507974-36508139)
chr2 (356-398)||(42105781-42105823)
chr2 (424-514)||(44441493-44441583)
chr2 (356-470)||(10589082-10589196)
chr2 (412-523)||(2251251-2251360)
chr2 (412-504)||(11931013-11931105)
chr2 (421-496)||(17074843-17074918)
chr2 (364-471)||(3603036-3603143)
chr2 (445-523)||(41176990-41177068)
chr2 (421-496)||(17095416-17095491)
chr2 (360-399)||(34480003-34480042)
chr2 (412-466)||(35353742-35353796)
chr2 (417-470)||(10589171-10589224)
chr2 (478-523)||(42105669-42105714)
[»] chr6 (25 HSPs)
chr6 (412-523)||(10744682-10744793)
chr6 (356-523)||(23843328-23843495)
chr6 (360-520)||(13234015-13234175)
chr6 (452-523)||(20496332-20496403)
chr6 (360-519)||(20845055-20845214)
chr6 (366-516)||(32457699-32457848)
chr6 (412-520)||(4663727-4663835)
chr6 (360-519)||(8644292-8644451)
chr6 (415-519)||(12652105-12652212)
chr6 (356-520)||(19759831-19759995)
chr6 (363-519)||(32804345-32804501)
chr6 (356-523)||(12576385-12576549)
chr6 (445-523)||(11426073-11426151)
chr6 (360-523)||(31748005-31748167)
chr6 (416-521)||(34020708-34020811)
chr6 (415-520)||(5544809-5544914)
chr6 (441-514)||(15128042-15128115)
chr6 (448-523)||(1944231-1944306)
chr6 (445-523)||(904400-904478)
chr6 (449-519)||(7049381-7049451)
chr6 (464-520)||(33194756-33194812)
chr6 (467-518)||(891742-891793)
chr6 (445-520)||(31804352-31804427)
chr6 (412-486)||(5417139-5417213)
chr6 (358-398)||(8633218-8633258)
[»] chr3 (43 HSPs)
chr3 (365-519)||(22844104-22844258)
chr3 (356-523)||(913220-913387)
chr3 (356-523)||(40797076-40797243)
chr3 (360-523)||(43029730-43029893)
chr3 (367-523)||(32237900-32238056)
chr3 (364-523)||(21585950-21586109)
chr3 (445-523)||(29776594-29776672)
chr3 (412-523)||(4019694-4019808)
chr3 (360-523)||(1165300-1165463)
chr3 (360-523)||(53426845-53427008)
chr3 (366-523)||(32089834-32089991)
chr3 (356-519)||(36540582-36540743)
chr3 (356-523)||(41882314-41882479)
chr3 (366-519)||(39340252-39340405)
chr3 (412-523)||(25939383-25939494)
chr3 (356-519)||(3088572-3088733)
chr3 (360-518)||(14741234-14741392)
chr3 (356-523)||(28995213-28995377)
chr3 (360-514)||(29182521-29182675)
chr3 (412-523)||(1220151-1220262)
chr3 (421-523)||(42106248-42106348)
chr3 (412-523)||(54240185-54240296)
chr3 (412-498)||(22893644-22893730)
chr3 (445-523)||(45664353-45664431)
chr3 (445-523)||(50519915-50519993)
chr3 (356-470)||(42106155-42106269)
chr3 (364-489)||(25374008-25374133)
chr3 (424-523)||(40365337-40365435)
chr3 (356-523)||(22286655-22286820)
chr3 (430-523)||(7656419-7656512)
chr3 (448-523)||(11846684-11846758)
chr3 (356-520)||(33977832-33977993)
chr3 (412-523)||(40461899-40462010)
chr3 (360-520)||(50460239-50460397)
chr3 (360-523)||(20200962-20201125)
chr3 (360-523)||(20203144-20203307)
chr3 (412-481)||(33069755-33069824)
chr3 (436-504)||(2598202-2598270)
chr3 (481-517)||(48060999-48061035)
chr3 (478-517)||(26412453-26412492)
chr3 (449-516)||(34767122-34767189)
chr3 (360-399)||(43839546-43839585)
chr3 (356-399)||(50519833-50519875)
[»] scaffold0316 (1 HSPs)
scaffold0316 (360-523)||(12107-12270)
[»] scaffold0012 (1 HSPs)
scaffold0012 (366-523)||(244689-244846)
[»] scaffold0157 (1 HSPs)
scaffold0157 (360-519)||(1049-1208)
[»] scaffold0722 (1 HSPs)
scaffold0722 (356-523)||(5430-5597)
[»] scaffold0024 (1 HSPs)
scaffold0024 (360-523)||(36576-36734)
[»] scaffold0340 (1 HSPs)
scaffold0340 (356-523)||(11680-11848)
[»] scaffold0018 (1 HSPs)
scaffold0018 (356-471)||(137014-137129)
[»] scaffold0002 (1 HSPs)
scaffold0002 (241-340)||(448051-448150)
[»] scaffold0150 (1 HSPs)
scaffold0150 (423-523)||(10215-10315)
[»] scaffold0023 (1 HSPs)
scaffold0023 (444-520)||(91310-91386)
[»] scaffold1294 (1 HSPs)
scaffold1294 (360-399)||(827-866)
[»] scaffold0665 (1 HSPs)
scaffold0665 (412-523)||(1031-1142)
[»] scaffold0045 (1 HSPs)
scaffold0045 (356-399)||(9676-9719)
[»] scaffold0627 (1 HSPs)
scaffold0627 (423-519)||(6695-6789)
[»] scaffold0011 (1 HSPs)
scaffold0011 (430-523)||(11131-11224)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 1458376 - 1458065
Alignment:
Q  18 attgaagggtagagagtcatagaatgagtgaaaaaagttcaatgaaggatgagaatgaatttgaaagatagaggcttgaatatagggttttcagttgtgt 117  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  1458376 attgaagggtagagagtcatagaatgagtgaaaaa-gttcaatgaaggatgagaatgaatttgaaagatagaggcttgaatatagggttttctgttatgt 1458278  T
Q  118 tagggcatacgtgatgtgaagtgaagcagtcaaacccactcttaaattctatttcagatacaaaatacccaatttaacccactcttaatatcacacacgg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  1458277 tagggcatacgtgatgtgaagtgaagcagtcaaacccactcttaaattctatttcatatacaaaatacccaatttaacccactcttaatatcacactcgg 1458178  T
Q  218 taatttcattgcatcaatgtacc-tagattagtagtaaaattgattttcagccaatataattcacagttgcacatacttggtaccttaaatactattaca 316  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1458177 taatttcattgcatcaatgtaccttagattagtagtaaaattgattttcagccaatataattcacagttgcacatacttggtaccttaaatactattaca 1458078  T
Q  317 catgtttataaag 329  Q
    |||||||||||||    
T  1458077 catgtttataaag 1458065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 52839573 - 52839740
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||| ||||||||||||||||||||||| || ||||| |||||| |||        |||||||  |||||||| |||||| ||||||| |||||| ||||    
T  52839573 tctaattcccttttattgaaataagtgattttcacatttatttcgttttttctttcgtgattttgtcgtcttagtgcgacgttgttttgttcgtcatctt 52839672  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||  ||||||||||| |||| ||||||||||||||||||||||| | || |||||||||||||||||    
T  52839673 tgtgagacgttgtttgtctttcttgtttcgttcaggtatttgttcagctcagattgtcagatcagctt 52839740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 5832276 - 5832444
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnn-gtgatttcttcgtcttattgcgaccttgttttattcgtcgtct 454  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||         |||||||| ||||||| ||||||| ||| ||| |||||||| |    
T  5832276 tctatttcccttttattgaaataagtgattttcacatctatttcgtttttttattttgtgatttcgtcgtcttcttgcgacgttggtttgttcgtcgtat 5832375  T
Q  455 ttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||| |||||||||||| |||| |||||||  ||||||||||| ||||||| |||||||||| ||||||    
T  5832376 ttgtgcgacgttgtttgtctttcttgtttctctcaggtatttgatcggttcagattgtcagaccagctt 5832444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 356 - 520
Target Start/End: Complemental strand, 33703580 - 33703417
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||        |||||||| |||||||| | || | ||||||| || ||||||||    
T  33703580 tctatttcccttttattgaaataagtgattttcacatctatttcgttt-ttctttcgtgatttcgtcgtcttagtacggcgttgttttgtttgtcgtctt 33703482  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    ||| |||||||||||| |||| |||||||||||| ||||||||| | ||| ||||||||||||||    
T  33703481 tgtgcgacgttgtttgtctttcttgtttcgttcacgtatttgtttgattcagattgtcagatcag 33703417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 413 - 523
Target Start/End: Original strand, 26199680 - 26199790
Alignment:
Q  413 tgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgt 512  Q
    ||||||| |||||||| |||||| ||||||| |||||||||||||| |||||||||||  |||| |||||||||||||||||||||||| ||| | ||||    
T  26199680 tgatttcatcgtcttagtgcgacattgttttgttcgtcgtctttgtgcgacgttgtttatctttcttgtttcgttcaggtatttgttcgattcaggttgt 26199779  T
Q  513 cagatcagctt 523  Q
    |||||||||||    
T  26199780 cagatcagctt 26199790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 8893340 - 8893503
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||| | |        |||||||| |||||||| | |||| |||| ||  |||||||||||||     
T  8893340 tttcccttttattgaaataagtgattttcacatctatttcgtcttttctttcgtgatttcatcgtcttagtacgacattgtgttgctcgtcgtctttgtg 8893439  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
     | ||||||||| |||| |||||| ||||||||||||||||||||| |||| ||||||||||||    
T  8893440 aggcgttgtttgtctttcttgttttgttcaggtatttgttcggttcagattttcagatcagctt 8893503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 22344979 - 22344816
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  22344979 tttcccttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 22344880  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  ||||||||||| || |||| |||||||||||||||||    
T  22344879 cgacgttgtttgtttttcttgtttctctcaggtatttgatcagttcagattgtcagatcagctt 22344816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 366 - 523
Target Start/End: Complemental strand, 27469769 - 27469612
Alignment:
Q  366 ttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgt 465  Q
    ||||||| |||||||| | || |||||||||||| |||        |||||||| |||||||| |||||| ||||||| ||| |||||||||| ||||||    
T  27469769 ttttattaaaataagttattttcacatctatttcgttttttcttttgtgatttcgtcgtcttagtgcgacgttgttttgttcatcgtctttgtgcgacgt 27469670  T
Q  466 tgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||| |||| |||||||||||||||| ||||||  ||  |||||||||||||||||    
T  27469669 tgtttgtctttcttgtttcgttcaggtaattgttcaatttagattgtcagatcagctt 27469612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 44562820 - 44562653
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || ||||||| || | |||        |||||||| || ||||  |||||| ||| ||| |||||||||||    
T  44562820 tctatttcccttttattgaaataagtgattttcacatctgttacgttttatattttgtgatttcgtcatcttcgtgcgacgttggtttgttcgtcgtctt 44562721  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||| ||||||| |||| |||||||  ||||||||||| | ||||| |||||||||||||||||    
T  44562720 tgtgcgacattgtttgtctttcttgtttctctcaggtatttgataggttcagattgtcagatcagctt 44562653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 630856 - 630688
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnn-gtgatttcttcgtcttattgcgaccttgttttattcgtcgtct 454  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||         |||||||| ||||||| ||||||| ||| ||| ||||||||||    
T  630856 tctatttcccttttattgaaataagtgattttcacatctatttcgtttttttattttgtgatttcgtcgtcttcttgcgacgttggtttgttcgtcgtct 630757  T
Q  455 ttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||| |||||||||| | |||| |||||||  ||| ||||||| |||||   |||||||||| ||||||    
T  630756 ttgtgcgacgttgttcgtctttcttgtttctctcaagtatttgatcggtcaagattgtcagaccagctt 630688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 11121075 - 11121186
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| |||||  |||| || |||||| ||||||| | |||||||||| |||| |||||| ||||| ||||||||||||||| |||||    
T  11121075 gtgatttcgtcgtcttagtgcgaggttgtgttgttcgtcatctttgtgcaacgttgtttgtctttcttgttttgttcatgtatttgttcggttcagattg 11121174  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  11121175 tcagatcagctt 11121186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 519
Target Start/End: Complemental strand, 12148119 - 12147956
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||||| ||||||| |||||||||| || |||||||||||  |||        |||||| | |||||||| || ||| ||||||| ||||| || ||    
T  12148119 tctatttcctttttattcaaataagtgattttcacatctattttgttttttctttcgtgattccgtcgtcttagtgtgactttgttttgttcgttgtttt 12148020  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||| | || ||||||| |||| |||||||||||||||||||||||| ||| |||||||||||||    
T  12148019 tgtgcaacattgtttgtctttcttgtttcgttcaggtatttgttcgattcagattgtcagatca 12147956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 21326516 - 21326683
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || ||||||| || | |||          |||||| |||||||  || ||| ||| ||| |||||||||||    
T  21326516 tctatttcccttttattgaaataagtgattttcacatctgttgcgttttttattttacgatttcgtcgtcttcgtgtgacattggtttgttcgtcgtctt 21326615  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||||||||||| |||| ||||||   ||||||||||| ||||||| |||||||||||||||||    
T  21326616 tgtgcgacgttgtttgtctttcttgtttttctcaggtatttgatcggttcagattgtcagatcagctt 21326683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 23320483 - 23320650
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||| | || ||||||| || | |||        |||||||| |||||||  || ||| ||| ||| |||||||||||    
T  23320483 tctatttcccttttattgaaataagtcattttcacatctgttacgttttttattttgtgatttcgtcgtcttcgtgtgacgttggtttgttcgtcgtctt 23320582  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||| |||| |||| |||||||  ||| ||||||| ||||||| |||||||||||||||||    
T  23320583 tgtgcgacgttatttgtctttcttgtttctctcatgtatttgatcggttcagattgtcagatcagctt 23320650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 44514060 - 44513906
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| ||||||||| ||||  ||||       |||| ||| |||||||| ||||||||||||||                
T  44514060 tctatttcccttttattgaaataagtgatttacacatccattttgtttctttttttgtgaattcgtcgtcttagtgcgaccttgtttt------------ 44513973  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
     || |||||||||||| |||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  44513972 -gtgcgacgttgtttgtctttcttgtttcgttcaggtatttgttcgattcagattgtcagatcagctt 44513906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 2350721 - 2350832
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||  |||||||| |||||| ||||||| || ||||||| ||| |||||||||||| |||||   ||| |||||||| ||||||||||||||||||    
T  2350721 gtgatttagtcgtcttagtgcgacgttgttttgttggtcgtctctgtgcgacgttgtttgtcttttcccttttgttcaggtgtttgttcggttcggattg 2350820  T
Q  512 tcagatcagctt 523  Q
    |||||| |||||    
T  2350821 tcagattagctt 2350832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 445 - 520
Target Start/End: Original strand, 28213180 - 28213255
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    |||||||||||||| |||| ||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  28213180 ttcgtcgtctttgtgcgacattgtttgtctttcttgtttctttcaggtatttgttcggttcagattgtcagatcag 28213255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 37685105 - 37684994
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| ||||||||  |||||  ||| ||| |||||||||||||| ||||||||||| |||| ||||||||||||  |||||||| | ||| |||||    
T  37685105 gtgatttcgtcgtcttagcgcgacggtgtcttaatcgtcgtctttgtatgacgttgtttgtctttcttgtttcgttcaaatatttgtttgattcagattg 37685006  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  37685005 tcagatcagctt 37684994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 37700412 - 37700523
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| ||||||||  |||||  ||| ||| |||||||||||||| ||||||||||| |||| ||||||||||||  |||||||| | ||| |||||    
T  37700412 gtgatttcgtcgtcttagcgcgacggtgtcttaatcgtcgtctttgtatgacgttgtttgtctttcttgtttcgttcaaatatttgtttgattcagattg 37700511  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  37700512 tcagatcagctt 37700523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 29067097 - 29067259
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| |  |||||||||||| | |        |||||||| || ||||| |||||| ||||||| ||||||||||||||     
T  29067097 tttcccttttattgaaataagtgattctcacatctatttcttct-tttctttgtgatttcatcttcttagtgcgacgttgttttgttcgtcgtctttgtg 29067195  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |  ||||||||| |||| |||||| ||||| |||||| ||||||||  ||| ||||||||||||    
T  29067196 cagcgttgtttgtctttcttgttttgttcaagtatttattcggttcaaattttcagatcagctt 29067259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 360 - 519
Target Start/End: Complemental strand, 33177664 - 33177506
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    ||||| |||||||||||||||||| || |||||| ||||| |||        |||||||| | |||||| |||||| |||| || |||| |||||||||     
T  33177664 tttcctttttattgaaataagtgattttcacatccatttcgttttttctttcgtgatttcattgtcttagtgcgacgttgtgttgttcgccgtctttgtg 33177565  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    | ||||||||||  ||||| |||| ||||| ||||||||||||||| |||||||||||||    
T  33177564 caacgttgtttgtgttttt-gttttgttcatgtatttgttcggttcagattgtcagatca 33177506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 430 - 523
Target Start/End: Complemental strand, 12967729 - 12967636
Alignment:
Q  430 tgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||| ||| ||| |||||||||||||| |||| ||||||| |||| |||||||  ||||||||||| ||||||| |||||||||||||||||    
T  12967729 tgcgacgttggtttgttcgtcgtctttgtgcgacattgtttgtctttcttgtttctctcaggtatttgatcggttcagattgtcagatcagctt 12967636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 4564561 - 4564726
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||| ||||||||||||||||||| || |||||||||||| |||        |||||||| |||||||  |||||| ||| ||  || ||||||||    
T  4564561 tctatttctcttttattgaaataagtgattt-cacatctatttcgttttttattttgtgatttcgtcgtcttcgtgcgacgttggttg-ttagtcgtctt 4564658  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| || ||||  ||||||||||| ||| ||| |||||||||||||||||    
T  4564659 tgtgcgacgttgtttgtttttcttatttctctcaggtatttgatcgcttcagattgtcagatcagctt 4564726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 519
Target Start/End: Original strand, 36621399 - 36621558
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||| |||||||||||||||||||||| |||||||||||| |||        |||||||  |||||||  |||| | ||| ||| || |||||||||||     
T  36621399 tttctcttttattgaaataagtgactttcacatctatttcgttttttgttttgtgattttgtcgtcttcgtgcggcgttggtttgtttgtcgtctttgtg 36621498  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    |||| | |||||  ||| ||||||| |||||||||||| ||||||| |||||||| ||||    
T  36621499 cgacatagtttgtttttcttgtttctttcaggtatttgatcggttcagattgtcacatca 36621558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 499
Target Start/End: Complemental strand, 40488464 - 40488325
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    ||||||||||||||||||||  || || |||||||||||| |||        |||||||| |||||||| |||||| ||||||| || |||||||||||     
T  40488464 tttcccttttattgaaataaacgattttcacatctatttcgttttttcttttgtgatttcgtcgtcttagtgcgacgttgttttgtttgtcgtctttgtg 40488365  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgtt 499  Q
    ||||||| | || |||| |||||| || ||||||||||||    
T  40488364 cgacgttatctgtctttcttgtttagtccaggtatttgtt 40488325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 430 - 519
Target Start/End: Original strand, 10264826 - 10264915
Alignment:
Q  430 tgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    |||||| ||| ||| |||||||||||||| | ||||||||||  ||| || ||||||||||||||||||||| ||| |||||||||||||    
T  10264826 tgcgacgttggtttgttcgtcgtctttgtgcaacgttgtttgtttttcttttttcgttcaggtatttgttcgattcagattgtcagatca 10264915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 365 - 523
Target Start/End: Original strand, 38646636 - 38646794
Alignment:
Q  365 cttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacg 464  Q
    ||||||||||||||||||| ||  |||||||||||||||        |||||||  |||||||  |||||| ||| ||| |||||||||||||| |||||    
T  38646636 cttttattgaaataagtgattttaacatctatttcattttttattttgtgattttgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacg 38646735  T
Q  465 ttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||  ||| |||||||  ||| ||||||   |||||| ||||| |||||||||||    
T  38646736 ttgtttgtttttcttgtttctctcatgtatttaaccggttcagattgccagatcagctt 38646794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 497
Target Start/End: Original strand, 23257135 - 23257272
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || ||||| |||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  23257135 tttcccttttattgaaataagtgattttcacatttattttgttttttatcttgtgatttcatcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 23257234  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttg 497  Q
    ||||||||||||  ||| |||||||  |||||||||||    
T  23257235 cgacgttgtttgtttttcttgtttctctcaggtatttg 23257272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 412 - 520
Target Start/End: Complemental strand, 38644812 - 38644704
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    ||||||||||||||||  |||||| ||| ||| |||||||||||||| |||| |||||||  ||| |||||||  ||||||||||| | || || |||||    
T  38644812 gtgatttcttcgtcttcgtgcgacattggtttgttcgtcgtctttgtgcgacattgtttgtttttcttgtttctctcaggtatttgattggctcagattg 38644713  T
Q  512 tcagatcag 520  Q
    |||||||||    
T  38644712 tcagatcag 38644704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 523
Target Start/End: Complemental strand, 48655037 - 48654945
Alignment:
Q  431 gcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||| ||| ||| |||||||||||||||| |||||||||| |||| |||||||||||| |||||||||  |||| |||||||| || |||||    
T  48655037 gcgacgttggtttgttcgtcgtctttgtacaacgttgtttgtctttattgtttcgttcatgtatttgtttagttcagattgtcatattagctt 48654945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 445 - 520
Target Start/End: Original strand, 46589279 - 46589354
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    |||||||||||||| || || |||||| |||| |||||||| ||| ||||||||||||||| ||||||||||||||    
T  46589279 ttcgtcgtctttgtgcggcggtgtttgtctttcttgtttcgctcaagtatttgttcggttcagattgtcagatcag 46589354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 15698247 - 15698408
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||| |||        |||||||| |||||||  || ||| |||  || ||| |||||||||      
T  15698247 tttcccttttattgaaataagtgattttcacatctatttcgttttttattttgtgatttcgtcgtctttgtgtgacgttg-gttgttcatcgtctttggg 15698345  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  ||||||||||| | ||||| |||||||||||||||||    
T  15698346 cgacgttgtttg-ttttgttgtttctctcaggtatttgattggttcagattgtcagatcagctt 15698408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 15276517 - 15276350
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||| ||  |||||| ||| ||| ||||||||||||||     
T  15276517 tttcccttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcgttttcgtgcgacgttggtttgttcgtcgtctttgtg 15276418  T
Q  460 cgacgttgtttgcctttt----ttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||||||   ||||    |||||||  ||||||||||| ||||||| |||||| ||||||||||    
T  15276417 cgatgttgttttttttttcttcttgtttctctcaggtatttgatcggttcagattgtgagatcagctt 15276350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 14717252 - 14717177
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    |||||||||||||| ||||||||||||  ||| |||||||  |||| |||||| ||||||| ||||||||||||||    
T  14717252 ttcgtcgtctttgtgcgacgttgtttgtttttcttgtttctctcagatatttgatcggttcagattgtcagatcag 14717177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 45659146 - 45659224
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||||||| |||||||| |||  ||| |||||||  | ||||||||| ||||||| |||||||||||||||||    
T  45659146 ttcgtcgtctttgtgcgacgttggttgtttttcttgtttctcttaggtatttgatcggttcagattgtcagatcagctt 45659224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 47392270 - 47392347
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||||||| || ||||||||| ||||| |||||||||||| |||||||||||||  | || ||||||||||||    
T  47392270 ttcgtcgtctttgtgcggcgttgtttgtctttt-tgtttcgttcagatatttgttcggtttaggttttcagatcagctt 47392347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 22032095 - 22032002
Alignment:
Q  423 gtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcaga 516  Q
    |||||| |||||  ||| ||| |||||||||||| |  | |||||||||||||| ||||||||||| ||||||||||| ||||  |||||||||    
T  22032095 gtcttagtgcgatgttggtttgttcgtcgtctttatgtggcgttgtttgcctttcttgtttcgttccggtatttgttcagttcatattgtcaga 22032002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 523
Target Start/End: Complemental strand, 32539251 - 32539093
Alignment:
Q  366 ttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgt 465  Q
    |||||||||||||||||| || | |||||||||  |||        |||||||  |||||||| | |||| ||| ||| |||||||||||||| ||||||    
T  32539251 ttttattgaaataagtgattttcgcatctattttgttttttattttgtgattttgtcgtcttagtacgacgttggtttgttcgtcgtctttgtgcgacgt 32539152  T
Q  466 tgtttgccttttttgtttcgttcaggtatttg-ttcggttcggattgtcagatcagctt 523  Q
    ||||||  ||| |||||| || || ||||||| || ||||| |||||||||||| ||||    
T  32539151 tgtttgtttttattgttttgtccatgtatttgttttggttcagattgtcagatctgctt 32539093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 477
Target Start/End: Original strand, 34566787 - 34566852
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgcctttt 477  Q
    |||||||| |||||||| ||||||| |||||| || ||||||||||| |||||||||||| |||||    
T  34566787 gtgatttcgtcgtcttagtgcgaccctgttttgtttgtcgtctttgtgcgacgttgtttgtctttt 34566852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 519
Target Start/End: Original strand, 900226 - 900299
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    |||||||||||||| | || ||||||| |||||||||||||| ||| ||| |||||||||| |||||||| ||||    
T  900226 ttcgtcgtctttgtgcaac-ttgtttgtcttttttgtttcgtccagatatctgttcggttcagattgtcatatca 900299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 484
Target Start/End: Original strand, 49651943 - 49652015
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttc 484  Q
    |||||||| |||||||  || ||| ||  ||| ||||||||||||||||||||||||||| |||| |||||||    
T  49651943 gtgatttcgtcgtcttcgtgtgacgttcgtttgttcgtcgtctttgtacgacgttgtttgtctttcttgtttc 49652015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 403
Target Start/End: Original strand, 45659093 - 45659132
Alignment:
Q  364 ccttttattgaaataagtgacttacacatctatttcattt 403  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  45659093 ccttttattgaaataagtgattttcacatctatttcattt 45659132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 523
Target Start/End: Complemental strand, 6212896 - 6212818
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||||||| |||| |||||||  ||| |||||||  ||||||||||| ||| |||   |||||||||||||||    
T  6212896 ttcgtcgtctttgtgcgacattgtttgtttttcttgtttctctcaggtatttgatcgattcatgttgtcagatcagctt 6212818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 14717310 - 14717272
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctattt 398  Q
    |||||||||||||||||||||||| || |||||||||||    
T  14717310 tttcccttttattgaaataagtgattttcacatctattt 14717272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 6212953 - 6212917
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctat 396  Q
    |||||||||||||||||||||||| || |||||||||    
T  6212953 tttcccttttattgaaataagtgattttcacatctat 6212917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 46728991 - 46728824
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| |||||| |||||||| ||||       |||||||| |||||||| |||||||||||||| |||||||||||    
T  46728991 tctatttcccttttattgaaataagtgatttacacgtctatttcgtttctttttttgtgatttcgtcgtcttagtgcgaccttgttttgttcgtcgtctt 46728892  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  46728891 tgtacgacgttgtttgcctttcttgtttcgttcaggtatttgttcggttcagattgtcagatcagctt 46728824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 356 - 519
Target Start/End: Complemental strand, 15730052 - 15729889
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| |||||| |||||||| ||||       |||||||| |||||||| |||||||||||||| |||||||||||    
T  15730052 tctatttcccttttattgaaataagtgatttacacttctatttcgtttctttttttgtgatttcgtcgtcttagtgcgaccttgttttgttcgtcgtctt 15729953  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  15729952 tgtgcgacgttgtttgcctttcttgtttcgttcaggtatttgttcagttcagattgtcagatca 15729889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 358 - 523
Target Start/End: Original strand, 51646138 - 51646304
Alignment:
Q  358 tatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgacctt-gttttattcgtcgtcttt 456  Q
    |||||||||||||||||||||||||| || |||||||||||| |||        |||||||| |||||||| |||||| || ||||| ||||||||||||    
T  51646138 tatttcccttttattgaaataagtgattttcacatctatttcgttttttctttcgtgatttcgtcgtcttaatgcgacatttgttttgttcgtcgtcttt 51646237  T
Q  457 gtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    || ||| |||||||| |||| |||||||| ||| ||||||||||||||| |||| ||||||||||||    
T  51646238 gtgcgatgttgtttgtctttcttgtttcgctcaagtatttgttcggttcagattatcagatcagctt 51646304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 16991915 - 16992082
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||        ||| ||||  ||| ||| || ||| ||||||| || ||||||||    
T  16991915 tctatttcccttttattgaaataagtgattttcacatctatttcattttttatttcgtggtttccccgttttagtgtgacgttgttttgtttgtcgtctt 16992014  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||||||| |||||| |||||||||||  |||||||| |||| ||||||||||||    
T  16992015 tgtgcgacgttgtttgcctttcttgttttgttcaggtattctttcggttcagattatcagatcagctt 16992082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 23067919 - 23067752
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || ||||||| || | |||        |||||||| |||||||  |||||| ||| ||| |||||||||||    
T  23067919 tctatttcccttttattgaaataagtgattttcacatctgttacgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctt 23067820  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||||||||||| |||| |||||||  ||||||||||| ||||||| |||||||||||||||||    
T  23067819 tgtgcgacgttgtttgtctttcttgtttctctcaggtatttgatcggttcagattgtcagatcagctt 23067752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 358 - 523
Target Start/End: Original strand, 43156821 - 43156986
Alignment:
Q  358 tatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttg 457  Q
    ||||||| |||||||||||||||||| || |||||||| ||  |||        |||||||| |||||||| ||| || ||||||| ||||||| |||||    
T  43156821 tatttcctttttattgaaataagtgattttcacatctactttgtttttttctttgtgatttcgtcgtcttagtgcaacgttgttttgttcgtcgactttg 43156920  T
Q  458 tacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    | |||||||||||| |||| ||||||| |||||||||||||||||||| |||||| ||||||||||    
T  43156921 tgcgacgttgtttgtctttcttgtttcattcaggtatttgttcggttcagattgttagatcagctt 43156986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 356 - 500
Target Start/End: Original strand, 38434641 - 38434786
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnn-gtgatttcttcgtcttattgcgaccttgttttattcgtcgtct 454  Q
    |||||||| |||||||| |||||||||| || ||||||||||| ||||         |||||||| |||||||| |||||| ||||||| ||||||||||    
T  38434641 tctatttctcttttattaaaataagtgattttcacatctattttatttttttcttttgtgatttcgtcgtcttagtgcgacgttgttttgttcgtcgtct 38434740  T
Q  455 ttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttc 500  Q
    |||| |||||||||||| |||| |||||||||||||||||||||||    
T  38434741 ttgtccgacgttgtttgtctttcttgtttcgttcaggtatttgttc 38434786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 4634330 - 4634493
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  4634330 tttcccttttattgaaataagtgattttcacatctattttgttttttaatttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 4634429  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  ||||||||||| || |||| |||||||||||||||||    
T  4634430 cgacgttgtttgtttttcttgtttctctcaggtatttgatcagttcagattgtcagatcagctt 4634493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 434 - 516
Target Start/End: Complemental strand, 29474321 - 29474239
Alignment:
Q  434 accttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcaga 516  Q
    |||||||||| |||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||    
T  29474321 accttgttttgttcgtcgtctttgtgcgacgttgtttgcttttcttgtttcgttcaggtatttgttcggttcagattgtcaga 29474239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 46716965 - 46716798
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||| |||||||||||||||||||| || | |||||||| | |||        |||||||| || ||||  |||||| ||| ||| |||||||||||    
T  46716965 tctattttccttttattgaaataagtgattttcgcatctattacgttttttattttgtgatttcgtcatcttcgtgcgacgttggtttgttcgtcgtctt 46716866  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||||||||||| |||| |||||||  ||||||||||| ||||||| |||||||||||||||||    
T  46716865 tgtgcgacgttgtttgtctttcttgtttctctcaggtatttgatcggttcagattgtcagatcagctt 46716798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 519
Target Start/End: Original strand, 2945184 - 2945343
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||| |||        |||||||| ||||| || |||||| ||| ||| ||| |||||| | |     
T  2945184 tttcccttttattgaaataagtgattttcacatctatttcgttttttattttgtgatttcatcgtcatagtgcgacgttggtttgttcatcgtctgtatg 2945283  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    || | ||||| |  |||||||||||||||||||||||||||||||| |||||||||||||    
T  2945284 cggcattgttagtgttttttgtttcgttcaggtatttgttcggttcagattgtcagatca 2945343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 9661900 - 9662063
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  9661900 tttcccttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 9661999  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  ||||||||||| || |||| |||||| ||||||||||    
T  9662000 cgacgttgtttgtttttcttgtttctctcaggtatttgatcagttcagattgttagatcagctt 9662063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 519
Target Start/End: Original strand, 12519703 - 12519862
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||| |||||| ||| ||| |||||||| |||||     
T  12519703 tttcccttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcgtcttagtgcgacgttggtttgttcgtcgtatttgtg 12519802  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||| |||| ||| |||| |||| ||||||||||||||||| |||||  ||||||||||||    
T  12519803 cgaagttgattgtctttcttgtatcgttcaggtatttgtttggttcaaattgtcagatca 12519862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 425 - 523
Target Start/End: Original strand, 14346543 - 14346641
Alignment:
Q  425 cttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||| |||||| ||||||| ||||||||| |||| |||||||||||| |||| |||||||||||||||||||| ||| ||| |||||||||||||||||    
T  14346543 cttagtgcgacgttgttttgttcgtcgtcgttgtgcgacgttgtttgtctttcttgtttcgttcaggtatttgctcgattcagattgtcagatcagctt 14346641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 14542579 - 14542416
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    ||||| |||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  14542579 tttcctttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 14542480  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  ||||||||||| || |||| |||||||||||||||||    
T  14542479 cgacgttgtttgtttttcttgtttctctcaggtatttgatcagttcagattgtcagatcagctt 14542416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 357 - 523
Target Start/End: Original strand, 1124986 - 1125151
Alignment:
Q  357 ctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtcttt 456  Q
    ||||||||  ||||||||||||||||| || ||||||||||||||||        |||||||| ||||| || |||||  ||||||| |  |||||||||    
T  1124986 ctatttcctatttattgaaataagtgattttcacatctatttcattt-ttctttcgtgatttcgtcgtcatagtgcgatgttgttttgtctgtcgtcttt 1125084  T
Q  457 gtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
     | |||||||| ||| |||| |||||||||||||||||||||| |||||  ||||||||||||||||    
T  1125085 ttgcgacgttgattgtctttcttgtttcgttcaggtatttgtttggttcaaattgtcagatcagctt 1125151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 438 - 523
Target Start/End: Original strand, 40859799 - 40859884
Alignment:
Q  438 tgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||| |||||||||||||| |||||||||||| |||| |||||| |||| |||||||||||||||| |||||||||||||||||    
T  40859799 tgttttgttcgtcgtctttgtgcgacgttgtttgtctttcttgttttgttcgggtatttgttcggttcagattgtcagatcagctt 40859884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 4959588 - 4959477
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| | |||| ||||||| ||||| || ||||| |||||||||||| |||| |||||||||||  |||||||||||||||| | ||    
T  4959588 gtgatttcgtcgtcttagtacgacattgttttgttcgttgtttttgtgcgacgttgtttgtctttcttgtttcgttcctgtatttgttcggttcgaaatg 4959489  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  4959488 tcagatcagctt 4959477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 29577137 - 29577026
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||  |||||||| ||| || | ||||| |||| ||||||||| || ||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  29577137 gtgattttatcgtcttagtgcaacgtagttttgttcgacgtctttgtgcggcgttgtttgtcttttttgtttcgttcaggtatttgttcggttcagattg 29577038  T
Q  512 tcagatcagctt 523  Q
    ||| ||| ||||    
T  29577037 tcatatcggctt 29577026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 46775871 - 46775761
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| || ||| |||||| ||||||||| ||||| || ||||||||| |||||||| |||||||| ||||||||||| ||| |||||    
T  46775871 gtgatttcgtcgtcttagtgtgacgttgtttaattcgtcgt-tttgtgcggcgttgtttgtcttttttgcttcgttcatgtatttgttcgattcagattg 46775773  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  46775772 tcagatcagctt 46775761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 421 - 523
Target Start/End: Complemental strand, 30416599 - 30416497
Alignment:
Q  421 tcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    |||||||  |||||| ||||||| |||||||||||||  |||||||||||  ||||||||||| |||  |||||||||||||||| ||||||||||||||    
T  30416599 tcgtctttgtgcgacgttgttttgttcgtcgtctttgcgcgacgttgtttctcttttttgttttgtttgggtatttgttcggttcagattgtcagatcag 30416500  T
Q  521 ctt 523  Q
    |||    
T  30416499 ctt 30416497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 7242830 - 7242680
Alignment:
Q  366 ttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgt 465  Q
    ||||||||||||||| || || ||||||||||||||||        ||||| |  |||||||| |||||| | | ||| |||||||||||||| ||| ||    
T  7242830 ttttattgaaataagcgattttcacatctatttcattttttattctgtgatattgtcgtcttagtgcgacgtcgatttgttcgtcgtctttgtgcgaagt 7242731  T
Q  466 tgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcaga 516  Q
    |||||| |||| || ||||||||| ||||||||||||||| ||||||||||    
T  7242730 tgtttgtctttcttatttcgttcaagtatttgttcggttcagattgtcaga 7242680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 366 - 523
Target Start/End: Original strand, 32189036 - 32189190
Alignment:
Q  366 ttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgt 465  Q
    |||||||||||||||||| || |||||||||||| |||        |||||||| |||||||  |||||| ||| ||| |||||||||||||| ||||||    
T  32189036 ttttattgaaataagtgattttcacatctatttcgttt---tttttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgt 32189132  T
Q  466 tgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||  ||| |||||||  |||||| |||| | ||||| |||||||||||||||||    
T  32189133 tgtttgtttttcttgtttctctcaggtgtttgattggttcagattgtcagatcagctt 32189190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 519
Target Start/End: Complemental strand, 31601429 - 31601264
Alignment:
Q  357 ctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnn-gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||||||||||||||||||||||| || |||||||||||| |||         |||||||| ||||||| ||||||| ||| ||| |||||||||||    
T  31601429 ctatttcccttttattgaaataagtgattttcacatctatttcgtttttttattttgtgatttcgtcgtcttcttgcgacgttggtttgttcgtcgtctt 31601330  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcagg--tatttgttcggttcggattgtcagatca 519  Q
    ||| |||| ||||||  |||| |||||||  |||||  |||||| | ||||| |||||||||||||    
T  31601329 tgtgcgacattgtttatctttcttgtttctctcaggtatatttgattggttcagattgtcagatca 31601264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 3169558 - 3169636
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||| |||||||| || ||||||||| |||| ||||||||||||| ||||||||||||||  ||||||||||||||||    
T  3169558 ttcgttgtctttgtgcggcgttgtttgtctttcttgtttcgttcagatatttgttcggttcaaattgtcagatcagctt 3169636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 519
Target Start/End: Complemental strand, 9474606 - 9474447
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    ||||| |||||||||||||||||| || |||||||||||| |||        |||||||| |||| ||  |||||| ||| ||| ||||||||||||||     
T  9474606 tttcctttttattgaaataagtgattttcacatctatttcgttttttattttgtgatttcgtcgtattcgtgcgacgttggtttgttcgtcgtctttgtg 9474507  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||||||||||||  ||| |||||||  | ||||||||| | ||||| ||||||| |||||    
T  9474506 cgacgttgtttgtttttcttgtttctcttaggtatttgattggttcagattgtctgatca 9474447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 421 - 523
Target Start/End: Complemental strand, 26576508 - 26576407
Alignment:
Q  421 tcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    |||||||||||| || ||||||| || |||||| |||| |||| ||||||| ||||  ||||||||||||||||||||||| ||| |||||||| |||||    
T  26576508 tcgtcttattgcaacgttgttttgtttgtcgtcgttgtgcgac-ttgtttgtctttcctgtttcgttcaggtatttgttcgattcagattgtcaaatcag 26576410  T
Q  521 ctt 523  Q
    |||    
T  26576409 ctt 26576407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 37869484 - 37869321
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || ||||||||||| ||||        |||||||  ||||||| ||||||| ||| ||| || || ||||||||     
T  37869484 tttcccttttattgaaataagtgattttcacatctattttattttgtattatgtgattttgtcgtcttcttgcgacgttggtttgtttgttgtctttgtg 37869385  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||| |||   ||| |||||||  | ||||||||| || |||| |||||||||||||||||    
T  37869384 cgacgttatttatttttcttgtttctctaaggtatttgatcagttcagattgtcagatcagctt 37869321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 519
Target Start/End: Complemental strand, 38170226 - 38170068
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    ||||||||| |||||||||||||| || ||||| |||||| |||        |||||||| |||||||| ||| |  ||||||| || ||||||||  ||    
T  38170226 tttccctttcattgaaataagtgattttcacatttatttcgttttttatttcgtgatttcatcgtcttagtgcaatattgttttgtttgtcgtcttctta 38170127  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    |||||||||||| |||| |||||| |||||||||||| ||| |||| |||||||| ||||    
T  38170126 cgacgttgtttgtctttcttgttt-gttcaggtatttattccgttcagattgtcatatca 38170068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 356 - 470
Target Start/End: Original strand, 40859689 - 40859803
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||        ||||||||  ||||||| |||||| ||||||| ||||| |||||    
T  40859689 tctatttcccttttattgaaataagtgattttcacatctatttcgtttttgctttcgtgatttcgccgtcttagtgcgacgttgttttgttcgttgtctt 40859788  T
Q  456 tgtacgacgttgttt 470  Q
    ||| ||||| |||||    
T  40859789 tgtgcgacgctgttt 40859803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 28990345 - 28990508
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||| ||||||||||||||||||| || |||||||||||  |||        | |||||  ||||| || |||||| ||| ||| ||||| ||||||||     
T  28990345 tttctcttttattgaaataagtgattttcacatctattttgttttttattttgggattttgtcgtcatagtgcgacgttggtttgttcgttgtctttgtg 28990444  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||  ||||| || |||| |||||||||||||| |||||||| |||| ||||||||||| |||||    
T  28990445 cggtgttgtctgtctttcttgtttcgttcaggcatttgttccgttcagattgtcagattagctt 28990508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 500
Target Start/End: Complemental strand, 29589373 - 29589288
Alignment:
Q  415 atttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttc 500  Q
    ||||| |||||||| |||||| ||||||| || || |||||||| |||| ||||||| | || |||||||||||||||||||||||    
T  29589373 atttcgtcgtcttagtgcgacgttgttttgtttgttgtctttgtgcgaccttgtttgtcattcttgtttcgttcaggtatttgttc 29589288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 470
Target Start/End: Complemental strand, 30416692 - 30416578
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||   ||        ||||||||   |||||| |||||| ||||||| |||||||||||    
T  30416692 tctatttcccttttattgaaataagtgattttcacatctatttttgtttttctttcgtgatttcgctgtcttagtgcgacgttgttttgttcgtcgtctt 30416593  T
Q  456 tgtacgacgttgttt 470  Q
    ||| |||||||||||    
T  30416592 tgtgcgacgttgttt 30416578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 1645537 - 1645462
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    ||||| |||||||| || ||||||||| |||| ||||||||||||| |||||||| |||||  |||||||||||||    
T  1645537 ttcgttgtctttgtgcggcgttgtttgtctttcttgtttcgttcagatatttgtttggttcaaattgtcagatcag 1645462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 6408542 - 6408653
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    ||||||||  ||||||  |||||| ||||||  |||||||||||||| |||| ||||||| |||  |||||||||| ||||| |||||| ||||  ||||    
T  6408542 gtgatttcgacgtcttggtgcgacgttgtttggttcgtcgtctttgtgcgacattgtttgtcttacttgtttcgtttaggtaattgttcagttcaaattg 6408641  T
Q  512 tcagatcagctt 523  Q
    ||| ||||||||    
T  6408642 tcaaatcagctt 6408653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 9781821 - 9781712
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    ||||||||||||||||| || ||| || ||||||| | ||| |||||  | ||||||||| |||||| |||| ||||||||||||||||||||| |||||    
T  9781821 gtgatttcttcgtcttagtgtgacgtt-ttttatttgccgtttttgtgggtcgttgtttgtcttttt-gttttgttcaggtatttgttcggttcagattg 9781724  T
Q  512 tcagatcagctt 523  Q
    ||| || |||||    
T  9781723 tcatattagctt 9781712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 519
Target Start/End: Original strand, 42972141 - 42972244
Alignment:
Q  416 tttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcag 515  Q
    |||| |||||||  |||||| ||| ||| |||||||||||| | ||||||| |||  |||| |||||||  ||||||||||| ||||||| |||||||||    
T  42972141 tttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttatgcgacgttatttttctttcttgtttctctcaggtatttgatcggttcagattgtcag 42972240  T
Q  516 atca 519  Q
    ||||    
T  42972241 atca 42972244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 523
Target Start/End: Complemental strand, 6789858 - 6789780
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||||||| || | ||||||| |||| |||||||||| ||||||||||||  ||| || ||||||||||||||    
T  6789858 ttcgtcgtctttgtgcgccattgtttgtctttcttgtttcgttaaggtatttgttcaattcagaatgtcagatcagctt 6789780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 356 - 519
Target Start/End: Original strand, 20961494 - 20961654
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||        |||||||| |||||||  |||||| |||  || |||||| ||||    
T  20961494 tctatttcccttttattgaaataagtgattttcacatctatttcgttt--tattttgtgatttcatcgtcttcgtgcgacgttg-gttgttcgtcatctt 20961590  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    |||||||||||| ||     | |||||||  ||||||||||| ||| ||| |||||||||||||    
T  20961591 tgtacgacgttggtttttcgtcttgtttctctcaggtatttgatcgcttcagattgtcagatca 20961654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 41486622 - 41486785
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||| |||||||||||| || || |||||||||||| |||        |||||||  |||||||  |||||  ||| ||| ||||||||||||||     
T  41486622 tttcccttatattgaaataagagattttcacatctatttcgttttttattttgtgattttgtcgtctttgtgcgatgttggtttgttcgtcgtctttgtg 41486721  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    | ||||||||||  ||| |||||||  |||| |||||| ||||||| |||||||| || |||||    
T  41486722 caacgttgtttgtttttcttgtttctctcagctatttgatcggttcagattgtcaaattagctt 41486785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 520
Target Start/End: Original strand, 49066786 - 49066891
Alignment:
Q  415 atttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtca 514  Q
    |||| ||||||||| |||||| || ||||||||||| | ||| ||| |||||||||| |||| | || | ||| ||||||||||||||||| |||| |||    
T  49066786 atttattcgtcttagtgcgacatttttttattcgtcatttttatacaacgttgtttgtctttctcgtcttgttgaggtatttgttcggttcagattatca 49066885  T
Q  515 gatcag 520  Q
     |||||    
T  49066886 tatcag 49066891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 1657581 - 1657470
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| |||||| ||||||| |||||| ||||| |||||| |  |||  |||  |||||| ||| ||||||||||||| ||| ||| |    
T  1657581 gtgatttcgtcgtcttagtgcgacattgttttgttcgtcatctttatacgacatcatttatcttccttgttttgtttaggtatttgttcgattcagatag 1657482  T
Q  512 tcagatcagctt 523  Q
    |||||| |||||    
T  1657481 tcagattagctt 1657470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 399
Target Start/End: Complemental strand, 29474425 - 29474382
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttc 399  Q
    |||||||||||||||||||||||||||| ||||| |||||||||    
T  29474425 tctatttcccttttattgaaataagtgatttacatatctatttc 29474382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 523
Target Start/End: Complemental strand, 30470102 - 30470027
Alignment:
Q  448 gtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||| ||||||||||||  ||| |||||||  |||||| |||| ||| ||| |||||||||||||||||    
T  30470102 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtgtttgatcgcttcagattgtcagatcagctt 30470027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 520
Target Start/End: Complemental strand, 35658536 - 35658438
Alignment:
Q  421 tcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    ||||||||||||||| ||||||| ||   ||||||||| |||||||||||| ||||| | ||| |||| ||| ||||||| |||  ||||||||||||||    
T  35658536 tcgtcttattgcgacgttgttttgtttaccgtctttgtgcgacgttgtttgtcttttctcttttgttc-ggtgtttgttcagtttagattgtcagatcag 35658438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 403
Target Start/End: Original strand, 53903653 - 53903699
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcattt 403  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||    
T  53903653 tctatttcccttttattgaaataagtga-tttcacatctatttcattt 53903699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 519
Target Start/End: Complemental strand, 46386840 - 46386682
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||| ||| ||| | |||||||||||||        |  ||||| |||||||| ||| || ||||||| |||| ||| |||||     
T  46386840 tttcccttttattgaaataaatgattta-agatctatttcattttttctttcgaaatttcatcgtcttagtgcaactttgttttgttcgccgtgtttgtg 46386742  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    || | |||||||  ||| |||||||||| |||||||||||| ||||  ||||||| ||||    
T  46386741 cgtcattgtttgtttttcttgtttcgtttaggtatttgttctgttcaaattgtcatatca 46386682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 523
Target Start/End: Complemental strand, 52555714 - 52555644
Alignment:
Q  453 ctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||||||||| |||| |||||||  | ||||||||  ||||||| |||||||| ||||||||    
T  52555714 ctttgtacgacgttgtttgtctttcttgtttctcttaggtatttaatcggttcagattgtcaaatcagctt 52555644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 53903713 - 53903791
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||| |||||||||||||||  |||  ||||||  ||||||||||| ||| ||| ||||| |||||||||||    
T  53903713 ttcgtcgtcttcgtacgacgttgtttgtttttcctgtttctctcaggtatttgatcgcttcagattgccagatcagctt 53903791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 519
Target Start/End: Complemental strand, 54420723 - 54420649
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    |||||||||||||| ||||||||||||  ||| |||||||  | ||||||||| ||| ||| |||||||||||||    
T  54420723 ttcgtcgtctttgtgcgacgttgtttgtttttcttgtttctctgaggtatttgatcgcttcagattgtcagatca 54420649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 34115666 - 34115560
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||  |||||| ||| | | ||||| |||||||| ||||||| |||     |||||||||  | ||||||||| ||||||| |||||    
T  34115666 gtgatttcgtcgtcttcgtgcgacgttggtatgttcgttgtctttgtgcgacgtttttt-----ttttgtttctcttaggtatttgatcggttcagattg 34115572  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  34115571 tcagatcagctt 34115560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 50003191 - 50003080
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||  |||||| ||| ||| |||  ||||||||| ||||| |||||| |||| |||||||  ||||||||| | |  || | |||||    
T  50003191 gtgatttcgtcgtcttcgtgcgacgttggtttgttcaccgtctttgtgcgacgatgtttgtctttcttgtttctctcaggtattagattagtccagattg 50003092  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  50003091 tcagatcagctt 50003080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 28015400 - 28015567
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| ||||||||||||||| || |       |||||||| |||||||| |||||||||||||| |||||||||||    
T  28015400 tctatttcccttttattgaaataagtgatttacacatctatttcgttcctttttttgtgatttcgtcgtcttaatgcgaccttgttttgttcgtcgtctt 28015499  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||    
T  28015500 tgtgcgacgttgtttgcctttcttgtttcgttcaggtatttgttcggttcagattgttagatcagctt 28015567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 356 - 520
Target Start/End: Complemental strand, 5025126 - 5024963
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||||||||||||||||||| |||| |||||| |||||||| ||||       |||||||| |||||||| |||||||||||||| |||||||||||    
T  5025126 tctatttcccttttattgaaata-gtgatttacacgtctatttcgtttctttttttgtgatttcgtcgtcttagtgcgaccttgttttgttcgtcgtctt 5025028  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    ||| ||||||||||| ||||| || |||| || ||||||||||||||||| ||||||||||||||    
T  5025027 tgtgcgacgttgttttcctttcttatttcatttaggtatttgttcggttcagattgtcagatcag 5024963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 38649428 - 38649262
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| ||||       ||||| || |||||||| || ||||||||||| || ||||||||    
T  38649428 tctattttccttttattgaaataagtgatttacacatctatttcgtttctttttttgtgatctcgtcgtcttagtgagaccttgttttgtttgtcgtctt 38649329  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||||||| || ||||||||| |||||||||| | || |||||| ||||||||||    
T  38649328 tgtgcgacgttgtttgcctttcttttttcgttcaagtatttgttc-gatcagattgttagatcagctt 38649262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 40775314 - 40775477
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  40775314 tttcccttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 40775413  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  ||||||||||| ||||||| |||||||||||||||||    
T  40775414 cgacgttgtttgtttttcttgtttctctcaggtatttgatcggttcagattgtcagatcagctt 40775477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 772542 - 772653
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| |||||| ||||||| |  ||||||||||| |||  ||||||| |||| |||||||||||||||||||||||||||| |||||    
T  772542 gtgatttcgtcgtcttagtgcgacgttgttttgtctgtcgtctttgtgcgatattgtttgtctttcttgtttcgttcaggtatttgttcggttcagattg 772641  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  772642 tcagatcagctt 772653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 360 - 520
Target Start/End: Complemental strand, 13008740 - 13008580
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||| ||||||||||||||||||| || |||||||||||  |||        |||||||  |||||||| |||||| ||| ||| ||||||||||||||     
T  13008740 tttctcttttattgaaataagtgattttcacatctattttgttttttattttgtgattttgtcgtcttagtgcgacgttggtttgttcgtcgtctttgtg 13008641  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    || ||||||||| |||| || ||||||||||||||||||||||||| |||||||| |||||    
T  13008640 cggcgttgtttgtctttcttatttcgttcaggtatttgttcggttcagattgtcatatcag 13008580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 360 - 520
Target Start/End: Original strand, 47749781 - 47749941
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||| |||        |||||||| | |||||  |||||| ||| ||| ||||||||||||||     
T  47749781 tttcccttttattgaaataagtgattttcacatctatttcgttttttattttgtgatttcgttgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 47749880  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    ||||||||||||  ||| |||||||  ||||||||||| ||||||| ||||||||||||||    
T  47749881 cgacgttgtttgtttttcttgtttctctcaggtatttgatcggttcagattgtcagatcag 47749941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 9933890 - 9934053
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||||||||||||| |||||||||| ||  ||||||||||| |||        ||||||||  ||||||| |||||| ||||||| |||||||||||    
T  9933890 tctatttcccttttattaaaataagtgatttttacatctatttcgttttttcttttgtgatttcgccgtcttagtgcgacgttgttttgttcgtcgtctt 9933989  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||   ||||| |||| |||||||||||||||||||||| | ||| |||||||||||||||||    
T  9933990 tgtgcgac---gtttgtctttcttgtttcgttcaggtatttgtt-gattcagattgtcagatcagctt 9934053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 358 - 523
Target Start/End: Complemental strand, 26017727 - 26017562
Alignment:
Q  358 tatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttg 457  Q
    |||||||||||||||||||||||||| || ||||||| || | |||        |||||||| |||||||  |||||  ||| ||| |||||||||||||    
T  26017727 tatttcccttttattgaaataagtgattttcacatctgttacgttttttattttgtgatttcgtcgtcttcgtgcgatgttggtttgttcgtcgtctttg 26017628  T
Q  458 tacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    | |||||||||||| |||| |||||||  ||||||||||| ||||||| |||||||| ||||||||    
T  26017627 tgcgacgttgtttgtctttcttgtttctctcaggtatttgatcggttcagattgtcatatcagctt 26017562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 356 - 488
Target Start/End: Original strand, 43483643 - 43483775
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||        ||||||||  ||||||| |||||| ||||||| |||||||||||    
T  43483643 tctatttcccttttattgaaataagtgattttcacatctatttcgtttttgcttttgtgatttcgccgtcttagtgcgacgttgttttgttcgtcgtctt 43483742  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttc 488  Q
    ||| |||||||||||| |||| |||||| ||||    
T  43483743 tgtgcgacgttgtttgtctttcttgttttgttc 43483775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 135212 - 135049
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    ||||||||||||||||||| |||| || ||||||||||||||||        |||||||| |||||||  |||||| ||| ||| |||||||| |||||     
T  135212 tttcccttttattgaaataggtgattttcacatctatttcattttgtattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtttttgtg 135113  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  | ||||||||| ||||||| |||||||| ||||||||    
T  135112 cgacgttgtttgattttcttgtttctcttaggtatttgatcggttcagattgtcaaatcagctt 135049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 356 - 519
Target Start/End: Complemental strand, 30992894 - 30992731
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || ||||||| || | |||        |||||||  |||||||  |||||| ||| ||| |||||||||||    
T  30992894 tctatttcccttttattgaaataagtgattttcacatctgttacgttttttattttgtgattttgtcgtcttcgtgcgacgttgatttgttcgtcgtctt 30992795  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||| |||||||||||| |||| ||| |||  ||||||||||| ||||||| |||||||||||||    
T  30992794 tgtgcgacgttgtttgtctttcttggttctctcaggtatttgatcggttcagattgtcagatca 30992731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 357 - 523
Target Start/End: Original strand, 16263432 - 16263589
Alignment:
Q  357 ctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtcttt 456  Q
    ||||||| ||||||||||||||||||  |||||||| |||||| ||||       |||||||| |||| ||| |||||||||||||| ||||||||| ||    
T  16263432 ctatttctcttttattgaaataagtgttttacacat-tatttcgtttcttttgttgtgatttcgtcgtgttagtgcgaccttgttttgttcgtcgtcctt 16263530  T
Q  457 gtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    || ||||| ||        |||||||||||||||||||||||||||||| |||||||| ||||||||    
T  16263531 gtgcgacgatg--------ttttgtttcgttcaggtatttgttcggttcagattgtcaaatcagctt 16263589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 367 - 523
Target Start/End: Complemental strand, 23177642 - 23177487
Alignment:
Q  367 tttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgtt 466  Q
    ||||||||||||||||| || |||||||||||| |||        ||||||||| ||||||| |||||||||| ||| |||||||||||||| || ||||    
T  23177642 tttattgaaataagtgattttcacatctatttcgttt-tcattttgtgatttctccgtcttagtgcgaccttggttttttcgtcgtctttgtgcggcgtt 23177544  T
Q  467 gtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    || || |||| |||||| ||||||||||||||| |||||  |||| || ||||||||    
T  23177543 gtctgtctttcttgttttgttcaggtatttgtttggttcaaattgccaaatcagctt 23177487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 39090220 - 39090298
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||| ||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |||||||| ||||||||    
T  39090220 ttcgtcatctttgtgcgacgttgtttgtctttcttgtttcgttcaggtatttgttcggttcagattgtcatatcagctt 39090298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 24470438 - 24470603
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||        |||||||| |||||    |||||| ||| ||  |||||||||||    
T  24470438 tctatttcccttttattgaaataagtgattt-cacatctatttcgttttttattttgtgatttcatcgtcaacgtgcgacgttggttg-ttcgtcgtctt 24470535  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| |||||||  ||||||||||| ||| ||| |||||||||||||||||    
T  24470536 tgtgcgacgttgtttgtttttcttgtttctctcaggtatttgatcgcttcagattgtcagatcagctt 24470603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 24475386 - 24475551
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||        |||||||| |||||    |||||| ||| ||  |||||||||||    
T  24475386 tctatttcccttttattgaaataagtgattt-cacatctatttcgttttttattttgtgatttcgtcgtccacgtgcgacgttggttg-ttcgtcgtctt 24475483  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| |||||||  ||||||||||| ||| ||| |||||||||||||||||    
T  24475484 tgtgcgacgttgtttgtttttcttgtttctctcaggtatttgatcgcttcagattgtcagatcagctt 24475551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 49166970 - 49167135
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||        |||||||| |||||||  |||||| ||| ||  |||||||||||    
T  49166970 tctatttcccttttattgaaataagtgattt-cacatctatttcgttttttatttcgtgatttcgtcgtcttcgtgcgacgttggttg-ttcgtcgtctt 49167067  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| |||||||   |||||||||| ||| ||| |||||| ||||||||||    
T  49167068 tgtgcgacgttgtttgtttttcttgtttctcccaggtatttgatcgcttcagattgttagatcagctt 49167135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 366 - 523
Target Start/End: Complemental strand, 23732454 - 23732297
Alignment:
Q  366 ttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgt 465  Q
    ||||||||||||| |||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||| |||||| ||||||| || ||     
T  23732454 ttttattgaaatatgtgattttcacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcatctttgtgcgtcgc 23732355  T
Q  466 tgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||| |||| |||||||||||||||||||| ||||||| |||||||| || |||||    
T  23732354 tgtttgtctttcttgtttcgttcaggtatttggtcggttcagattgtcaaattagctt 23732297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 10250552 - 10250387
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||| |||| |||||||||||||||||| || |||||||||||| |||        ||||||||  ||||    || ||| ||||||| |||||||||||    
T  10250552 tctaattcctttttattgaaataagtgattttcacatctatttcgttttttctttcgtgatttcgccgtcgg--tgtgacgttgttttgttcgtcgtctt 10250455  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||  | ||||||||| ||||||| ||||||||||| |||||||| |||| |||||||||| ||||||    
T  10250454 tgtgtggcgttgtttgtcttttttatttcgttcaggaatttgttccgttcagattgtcagaacagctt 10250387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 7985939 - 7986102
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||| ||||||||||| ||| || ||||||||||||||||        |||||||| || ||||  || ||| ||| ||| ||||||||||||||     
T  7985939 tttcccttctattgaaataaatgattttcacatctatttcattttgtattttgtgatttcgtcatcttcgtgtgacgttggtttgttcgtcgtctttgtg 7986038  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
     |||||||||||  ||| |||||||  ||||||||||| || |||| |||||||| ||||||||    
T  7986039 tgacgttgtttgtttttcttgtttctctcaggtatttgatccgttcagattgtcaaatcagctt 7986102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 22751570 - 22751648
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||||| | || |||||||||||||| ||||||||||||  ||||||||| |||| |||||||||||||||||    
T  22751570 ttcgtcgtctttatgcggcgttgtttgcctttcttgtttcgttcaactatttgttcagttcagattgtcagatcagctt 22751648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 43807165 - 43807054
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||  |||||  ||| ||| |||||| ||||||| |||||||||||| |||| |||||||  |||||| |||| ||||||| |||||    
T  43807165 gtgatttcgtcgtcttcgtgcgatgttggtttgttcgtcatctttgtgcgacgttgtttgtctttcttgtttctctcaggtgtttgatcggttcagattg 43807066  T
Q  512 tcagatcagctt 523  Q
    | ||||||||||    
T  43807065 taagatcagctt 43807054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 8611693 - 8611528
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||  || ||||||||    
T  8611693 tctatttcccttttattgaaataagtgattt-cacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggttg-ttagtcgtctt 8611596  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| |||||||  |||||| |||| ||| ||| |||||||| ||||||||    
T  8611595 tgtgcgacgttgtttgtttttcttgtttctctcaggtgtttgatcgcttcagattgtcatatcagctt 8611528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 403
Target Start/End: Original strand, 39090159 - 39090206
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcattt 403  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||    
T  39090159 tctatttcccttttattgaaataagtgattttcacatctatttcattt 39090206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 523
Target Start/End: Original strand, 46918535 - 46918609
Alignment:
Q  448 gtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||| ||  |||||||| | || |||||||||||||| ||||||||||||| |||||||||||||||||    
T  46918535 gtcgtctttgtgcggtgttgtttgtcattcttgtttcgttcagg-atttgttcggttcagattgtcagatcagctt 46918609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 11001975 - 11002053
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||||||| | ||||||||||  ||| |||||||  ||||||||||| ||| ||| |||||||||||||||||    
T  11001975 ttcgtcgtctttgtgcaacgttgtttgtttttcttgtttctctcaggtatttgatcgcttcagattgtcagatcagctt 11002053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 40476839 - 40476917
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||||||| ||||||||||||  ||| |||||||  ||||||||||| ||  ||| |||||||||||||||||    
T  40476839 ttcgtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttgatcacttcagattgtcagatcagctt 40476917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 44681508 - 44681670
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||| |||        ||| |||| |||||| | || ||| ||| ||| |||||||| |||||     
T  44681508 tttcccttttattgaaataagtgattttcacatctatttcgttt-tgattttgtggtttcgtcgtctcagtgtgacgttggtttgttcgtcgtttttgtg 44681606  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
     ||||||||||| |||| |||||||||| || ||||| ||  |||| |||||||| | ||||||    
T  44681607 ggacgttgtttgtctttcttgtttcgtttagatatttattatgttcagattgtcaaaccagctt 44681670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 477
Target Start/End: Complemental strand, 14734064 - 14733999
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgcctttt 477  Q
    |||||||| |||||||| |||||| ||||||| || ||||||||||| |||||||||||| |||||    
T  14734064 gtgatttcgtcgtcttagtgcgacgttgttttgtttgtcgtctttgtgcgacgttgtttgtctttt 14733999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 523
Target Start/End: Complemental strand, 37890453 - 37890393
Alignment:
Q  463 cgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||  ||| |||||||||||| ||||||||||| ||| |||||||||||||||||    
T  37890453 cgttgtttgtttttcttgtttcgttcacgtatttgttcgtttcagattgtcagatcagctt 37890393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 523
Target Start/End: Original strand, 8319434 - 8319525
Alignment:
Q  432 cgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||| ||| ||| |||||||||||||| | || ||||||| |||| |||||||  ||||| ||||| ||||||| |||||| ||||||||||    
T  8319434 cgacgttggtttgttcgtcgtctttgtgcaaccttgtttgtctttcttgtttctctcaggcatttgatcggttcagattgttagatcagctt 8319525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 42490802 - 42490913
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||  || ||| ||| ||| ||||| | |||||| |||| |||||||  ||| |||||||  ||||||||||| ||||||| || ||    
T  42490802 gtgatttcatcgtcttcgtgtgacgttggtttgttcgttgcctttgtgcgacattgtttgtttttcttgtttctctcaggtatttgatcggttcagactg 42490901  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  42490902 tcagatcagctt 42490913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 29804690 - 29804583
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| ||||| || ||||||  |||||| || ||||||||||| ||||||||||    |||||| | | |||||||| |||||||| ||| ||||     
T  29804690 gtgatttcgtcgtcatagtgcgacgctgttttgtttgtcgtctttgtgcgacgttgtt----ttttttttcttgttcaggtgtttgttcgattcagatta 29804595  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  29804594 tcagatcagctt 29804583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 523
Target Start/End: Complemental strand, 33530529 - 33530379
Alignment:
Q  366 ttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgt 465  Q
    |||||||||||||||||| ||  ||||||||||| |||        |||||||  |||||||| | |||| |||| || |||||||||||||| ||| ||    
T  33530529 ttttattgaaataagtgatttttacatctatttcgttttctctttcgtgattttgtcgtcttagtacgacgttgtgttgttcgtcgtctttgtgcgaagt 33530430  T
Q  466 tgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |       | |||||||| ||||| ||||||||||||||| |||||||| ||||||||    
T  33530429 t-------tgttttgttttgttcatgtatttgttcggttcagattgtcaaatcagctt 33530379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 36350300 - 36350378
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||| ||  ||||||||||| ||||||||||| |||||| ||||||||||  |  |||||||| ||||||||    
T  36350300 ttcgtcgtcttagtgtgacgttgtttgtcttttttgtttggttcagatatttgttcgacttagattgtcatatcagctt 36350378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 519
Target Start/End: Complemental strand, 41748509 - 41748435
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    |||| |||||| || |||||||||||| |||| |||||| |||  |||||||||||||||| ||| |||||||||    
T  41748509 ttcgccgtcttagtgcgacgttgtttgtctttcttgttttgtttgggtatttgttcggttcagatcgtcagatca 41748435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 423 - 523
Target Start/End: Original strand, 34893221 - 34893319
Alignment:
Q  423 gtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagct 522  Q
    |||||| |||| | ||||||| |||||||||||||||| |  ||||||| |||| |||||||||  |||||||||||   ||| | ||||||||||||||    
T  34893221 gtcttagtgcgtcgttgttttgttcgtcgtctttgtacaatcttgtttgtctttcttgtttcgt--aggtatttgtttcattcagtttgtcagatcagct 34893318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 37399730 - 37399782
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttg 497  Q
    |||||||||||||| |||||||||||| |||| ||||||| |||| |||||||    
T  37399730 ttcgtcgtctttgtgcgacgttgtttgtctttcttgtttctttcaagtatttg 37399782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 403
Target Start/End: Complemental strand, 35141814 - 35141775
Alignment:
Q  364 ccttttattgaaataagtgacttacacatctatttcattt 403  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  35141814 ccttttattgaaataagtgattttcacatctatttcattt 35141775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 399
Target Start/End: Original strand, 47156437 - 47156480
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttc 399  Q
    ||||||| |||||||||||||||||||| || ||||||||||||    
T  47156437 tctattttccttttattgaaataagtgattttcacatctatttc 47156480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 15124047 - 15124009
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctattt 398  Q
    |||||||||||||||||||||||| || |||||||||||    
T  15124047 tttcccttttattgaaataagtgattttcacatctattt 15124009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 458
Target Start/End: Original strand, 32312666 - 32312712
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgt 458  Q
    ||||||||||||||||| ||| || ||||||| ||||||||||||||    
T  32312666 gtgatttcttcgtcttagtgcaacgttgttttgttcgtcgtctttgt 32312712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 41554530 - 41554697
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||       |||||||| |||||||| |||||||||||||||||||||||| |    
T  41554530 tctatttcccttttattgaaataagtgatttacacatctatttcgtttcttttgtagtgatttcgtcgtcttagtgcgaccttgttttattcgtcgtcct 41554629  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||||||||||| |||| |||||||| ||||||||||||||||||| |||||||||||||||||    
T  41554630 tgtgcgacgttgtttgtctttcttgtttcgctcaggtatttgttcggttcagattgtcagatcagctt 41554697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 33486640 - 33486473
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||       |||||||| |||||||| |||||||||||||| |||||||||||    
T  33486640 tctatttcccttttattgaaataagtgatttacacatctatttcgtttctttttttgtgatttcgtcgtcttagtgcgaccttgttttgttcgtcgtctt 33486541  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||||||||||| |||| |||||||||||| ||||||||||||||| |||||||| ||||||||    
T  33486540 tgtgcgacgttgtttgtctttcttgtttcgttcaagtatttgttcggttcagattgtcaaatcagctt 33486473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 20270813 - 20270924
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| |||||| ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  20270813 gtgatttcgtcgtcttagtgcgacgttgttttgttcgtcgtctttgtgcgacgttgtttgcctttcttgtttcgttcaggtatttgttcggttcagattg 20270912  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  20270913 tcagatcagctt 20270924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 4726999 - 4726832
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || ||||||| || ||||||       |||||||| |||||||  |||||  ||| ||  |||||||||||    
T  4726999 tctatttcccttttattgaaataagtgattttcacatctgttacatttcttattttgtgatttcgtcgtcttcgtgcgatgttggttagttcgtcgtctt 4726900  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||||||||||| |||| |||||||  ||||||||||| ||||||| |||||||||||||||||    
T  4726899 tgtgcgacgttgtttgtctttcttgtttctctcaggtatttgatcggttcagattgtcagatcagctt 4726832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 22397563 - 22397452
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| |||||| ||||||| |||||||||||||| |||| ||||||| |||| || ||||||||||||||||||||| ||| |||||    
T  22397563 gtgatttcgtcgtcttagtgcgacgttgttttgttcgtcgtctttgtgcgacattgtttgtctttcttatttcgttcaggtatttgttcgattcagattg 22397464  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  22397463 tcagatcagctt 22397452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 2415447 - 2415610
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || || || ||||||||||        |||||||  |||||||  |||||| ||| ||| ||||| ||||||||     
T  2415447 tttcccttttattgaaataagtgattttcatatatatttcattttttattttgtgattttgtcgtcttcatgcgacgttggtttgttcgttgtctttgtg 2415546  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||| ||||||| |||||||||| | |||||||||||||||||||| |||||||||||||||||    
T  2415547 cgacattgtttgtcttttttgttactttcaggtatttgttcggttcagattgtcagatcagctt 2415610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 15710589 - 15710752
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||| |||         ||||||  || ||||| |||||| ||||||  ||||| ||||||||     
T  15710589 tttcccttttattgaaataagtgattttcacatctatttcgttttttctttcatgattttgtcatcttagtgcgacgttgtttcgttcgttgtctttgtg 15710688  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
     | ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  15710689 tggcgttgtttgtctttcttgtttcgttcaggtatttgttcggttcgaattgtcagatcagctt 15710752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 357 - 523
Target Start/End: Original strand, 34843960 - 34844126
Alignment:
Q  357 ctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtcttt 456  Q
    |||||||||||||||||||||||| || || |||||||||||  |||        |||||||  ||||| || |||||| ||||| | || ||| |||||    
T  34843960 ctatttcccttttattgaaataagcgattttcacatctattttgttttttcttttgtgattttgtcgtcctagtgcgactttgttatgtttgtcatcttt 34844059  T
Q  457 gtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
     |||||||||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||||||    
T  34844060 atacgacgttgtttgtcttttttgtttcgttcaggtatttgctcgattcagattgtcagatcagctt 34844126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 8812222 - 8812056
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||||| |||||||||| ||||||| || || ||||||||| |||        ||||||||  ||||||| |||||| ||||||| |||||||||||    
T  8812222 tctatttcctttttattgaagtaagtgattttcatatctatttcgtttttgctttcgtgatttcgccgtcttagtgcgacgttgttttgttcgtcgtctt 8812123  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||  || |||||||| |||| |||||| |||| |||||||||||||||| |||||||||||||||||    
T  8812122 tgtggga-gttgtttgtctttcttgttttgttcgggtatttgttcggttcagattgtcagatcagctt 8812056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 356 - 519
Target Start/End: Complemental strand, 18472795 - 18472634
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||  ||||       |||||||| |||||||| || ||| ||||||  ||| |||||||    
T  18472795 tctattttccttttattgcaataagtgatttacacatctattttgtttctttttt-gtgatttcgtcgtcttagtgtgactttgtttg-ttcctcgtctt 18472698  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||| |||||||||||| |||| ||||||| |||||||||||||||| ||| |||||||||||||    
T  18472697 tgtgcgacgttgtttgtctttcttgtttcattcaggtatttgttcgattcagattgtcagatca 18472634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 519
Target Start/End: Original strand, 31645876 - 31646035
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        ||||||||||||||||  |||||| ||| ||| ||||||||||||||     
T  31645876 tttcccttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcttcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 31645975  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||||||||||||  ||  |||||||  ||||||||||| || |||| |||||||||||||    
T  31645976 cgacgttgtttgttttccttgtttctctcaggtatttgatcagttcagattgtcagatca 31646035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 364 - 518
Target Start/End: Original strand, 41358090 - 41358244
Alignment:
Q  364 ccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgac 463  Q
    |||||||||||||||||| | || ||||||||||||||||        |||||||  |||||||| |||||| ||||||| |||||||| ||||| || |    
T  41358090 ccttttattgaaataagttattttcacatctatttcattttttccttcgtgattttgtcgtcttagtgcgacattgttttgttcgtcgtgtttgtgcggc 41358189  T
Q  464 gttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatc 518  Q
    |||||||| |||| ||||||   | ||||||||||||||||| ||||||||||||    
T  41358190 gttgtttgtctttcttgttttaattaggtatttgttcggttcagattgtcagatc 41358244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 40774859 - 40774971
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgt-ttgccttttttgtttcgttcaggtatttgttcggttcggatt 510  Q
    |||||||  |||||||| |||||| ||||||| | |||||||||||| | || |||| ||| |||| |||||||||||||||||||||||||||| ||||    
T  40774859 gtgattttgtcgtcttagtgcgacgttgttttgtccgtcgtctttgtgcaaccttgtattgtctttcttgtttcgttcaggtatttgttcggttcagatt 40774958  T
Q  511 gtcagatcagctt 523  Q
    |||||||||||||    
T  40774959 gtcagatcagctt 40774971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 6647928 - 6647817
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| ||||||  |||  |||||||||||||||| || ||||||||| |||| ||||||  ||||| |||||||||||||| |||||    
T  6647928 gtgatttcgtcgtcttagtgcgacgatgtgctattcgtcgtctttgtgcggcgttgtttgtctttcttgttttattcagctatttgttcggttcagattg 6647829  T
Q  512 tcagatcagctt 523  Q
    |||| |||||||    
T  6647828 tcaggtcagctt 6647817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 13007791 - 13007901
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| ||| || |||||||||||||||||||||| |||||||||||| |||| ||| |||| |||||||||||||||| ||  |||     
T  13007791 gtgatttcgtcgtcttagtgcaacgttgttttattcgtcgtctttgtgcgacgttgtttgtctttcttg-ttcgctcaggtatttgttcggatcaaatta 13007889  T
Q  512 tcagatcagctt 523  Q
    ||| ||||||||    
T  13007890 tcatatcagctt 13007901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 13079244 - 13079354
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| ||| || |||||||||||||||||||||| |||| ||||||| |||| ||| ||||||||||||||||||||| ||  |||     
T  13079244 gtgatttcgtcgtcttagtgcaacgttgttttattcgtcgtctttgtgcgacattgtttgtctttcttg-ttcgttcaggtatttgttcggatcaaatta 13079342  T
Q  512 tcagatcagctt 523  Q
    ||| ||||||||    
T  13079343 tcatatcagctt 13079354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 496
Target Start/End: Original strand, 34873908 - 34874044
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |        |||||||| |||||||| |||||  |||||||||||||| |||||||     
T  34873908 tttcccttttattgaaataagtgagttatacatctatttcatcttttctttcgtgatttcgtcgtcttaatgcgatgttgttttattcgtcatctttgtg 34874007  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtattt 496  Q
     | ||||||||| |||| ||||||| ||||| |||||    
T  34874008 tggcgttgtttgtctttcttgtttctttcagatattt 34874044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 6887245 - 6887082
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  6887245 tttcccttttattgaaataagtgattttcacatctattttgttttttcttttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 6887146  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| ||| |||  ||||||||||| || |||| |||||| |||| |||||    
T  6887145 cgacgttgtttgtttttcttgcttctctcaggtatttgatcagttcagattgttagattagctt 6887082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 4070597 - 4070761
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||||| |||||||||||||||||| || ||||| |||||| |||        |||||||| |||| ||  |||||| ||| ||  |||||||||||    
T  4070597 tctatttcctttttattgaaataagtgattttcacatttatttcgttt--tattttgtgatttcgtcgtattcgtgcgacgttggttg-ttcgtcgtctt 4070693  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| |||||||  ||||||||||| ||| ||| |||||||||||||||||    
T  4070694 tgtgcgacgttgtttgtttttcttgtttctctcaggtatttgatcgtttcagattgtcagatcagctt 4070761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 13080252 - 13080364
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt--tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggat 509  Q
    |||||||| |||||||| ||| || |||||||||||||||||||  ||| |||||||||||| |||| ||| ||||||||||||||||||||| ||  ||    
T  13080252 gtgatttcgtcgtcttagtgcaacgttgttttattcgtcgtctttgtgtgcgacgttgtttgtctttcttg-ttcgttcaggtatttgttcggatcaaat 13080350  T
Q  510 tgtcagatcagctt 523  Q
    | ||| ||||||||    
T  13080351 tatcatatcagctt 13080364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 412 - 520
Target Start/End: Complemental strand, 9034957 - 9034849
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||  |||||| ||| ||| ||| |||||||||| |||| |||| || |||| |||||||  ||||||||||| ||||||| |||||    
T  9034957 gtgatttcatcgtcttcgtgcgacgttggtttgttcctcgtctttgtgcgacattgtctgtctttcttgtttctctcaggtatttgatcggttcagattg 9034858  T
Q  512 tcagatcag 520  Q
    |||||||||    
T  9034857 tcagatcag 9034849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 356 - 519
Target Start/End: Complemental strand, 14910735 - 14910584
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||             |||||||| |||||||| | |||| ||||||| |||| ||| ||    
T  14910735 tctatttcccttttattgaaataagtgattttcacatctattt------------tgtgatttcatcgtcttagtacgacattgttttgttcgccgtatt 14910648  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    |||   || ||||||| |||| |||||||||||| ||||||||||| ||  |||||||||||||    
T  14910647 tgtgtaacattgtttgtctttcttgtttcgttcatgtatttgttcgttttagattgtcagatca 14910584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 29310369 - 29310258
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||  |||||| ||| ||| |||||||||||||| ||||||||||||  ||| |||||||  ||||||||||| || ||||  |||     
T  29310369 gtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttgatcagttcaaatta 29310270  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  29310269 tcagatcagctt 29310258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 41988251 - 41988362
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||  |||||||| |||||| ||||||| || ||||||||||| || | ||||||| ||||||||||||||| | ||||||||| | ||| | |||    
T  41988251 gtgattttgtcgtcttagtgcgacgttgttttgtttgtcgtctttgtgcggctttgtttgtcttttttgtttcgtttaagtatttgtttgtttcaggttg 41988350  T
Q  512 tcagatcagctt 523  Q
    ||| ||||||||    
T  41988351 tcatatcagctt 41988362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 28618647 - 28618812
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||  ||| |||||||    
T  28618647 tctatttcccttttattgaaataagtgattt-cacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggttg-ttcatcgtctt 28618744  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||| ||||  ||| |||||||  ||||||||||| ||| ||  |||||||||||||||||    
T  28618745 tgtgcgacgttatttgtttttcttgtttctctcaggtatttgatcgctttagattgtcagatcagctt 28618812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 32390714 - 32390551
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    ||||| |||||||||||||||||| || |||||||||||| |||        |||||||| || | ||| |||||| ||| ||  || || ||||||||     
T  32390714 tttcctttttattgaaataagtgattttcacatctatttcgttttttattttgtgatttcgtcatattagtgcgacgttggttcgtttgttgtctttgtg 32390615  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    || ||||||||| |||| ||||||| ||| ||||||||||||||||  ||| |||||| |||||    
T  32390614 cggcgttgtttgtctttcttgtttcattcgggtatttgttcggttcaaattatcagattagctt 32390551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 34866474 - 34866637
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||| |||||||||||||||| || || || ||||||||| |||        |||||||| |||||||| |||||| || |||| |||||||||||||||    
T  34866474 tttctcttttattgaaataagcgagtttcatatctatttcgttttttctttcgtgatttcgtcgtcttagtgcgacgttattttgttcgtcgtctttgta 34866573  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    || ||| ||||  |||| || |||| ||||| |||||||||| |||  ||||||| || |||||    
T  34866574 cggcgtagtttatctttcttttttcattcagatatttgttcgattcaaattgtcatataagctt 34866637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 421 - 515
Target Start/End: Original strand, 37425132 - 37425226
Alignment:
Q  421 tcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcag 515  Q
    |||||||  |||||| ||||||| || ||||||||||| |||||||||||| | || ||||||||| ||||||||||||| |||  |||||||||    
T  37425132 tcgtctttgtgcgacgttgttttgtttgtcgtctttgtgcgacgttgtttgtcattcttgtttcgtacaggtatttgttcagtttagattgtcag 37425226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 520
Target Start/End: Original strand, 5378345 - 5378509
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || || || | || |||||        |||||||| |||||||  |||||  ||| ||| |||||||||||    
T  5378345 tctatttcccttttattgaaataagtgattttcatatttgttgcattttttattttgtgatttcgtcgtcttcgtgcgaaattggtttgttcgtcgtctt 5378444  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    ||| |||| ||| ||| |||| |||||||  |||| | |||| ||||||| ||||||| ||||||    
T  5378445 tgtgcgacattgcttgtctttcttgtttctctcagatgtttgatcggttcagattgtcggatcag 5378509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 437 - 523
Target Start/End: Original strand, 8957330 - 8957416
Alignment:
Q  437 ttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||| || || |||||||| |||||||||||| ||||| | | | |||||||| ||||||| |||| |||||||||||||||||    
T  8957330 ttgttttgtttgttgtctttgtgcgacgttgtttgtcttttctctcttgttcaggtgtttgttcagttcagattgtcagatcagctt 8957416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 477
Target Start/End: Complemental strand, 40565170 - 40565105
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgcctttt 477  Q
    |||||||| |||||||| ||||||| |||||| || ||||||||||| |||||||||||| |||||    
T  40565170 gtgatttcgtcgtcttagtgcgaccatgttttgtttgtcgtctttgtgcgacgttgtttgtctttt 40565105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 519
Target Start/End: Complemental strand, 6074751 - 6074644
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| ||| ||  |||||| || ||||||||||| |||| ||||||| |||||   | | ||||| || |||||||||||| |||||    
T  6074751 gtgatttcgtcgtcttagtgcaacactgttttgtttgtcgtctttgtgcgaccttgtttgtcttttccctcttgttcaagtgtttgttcggttcagattg 6074652  T
Q  512 tcagatca 519  Q
    ||||||||    
T  6074651 tcagatca 6074644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 520
Target Start/End: Complemental strand, 19646108 - 19645948
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    ||||||||||| |||||||||||| || |||||||||||| |||        |||||||  |||||||  |||| | |   ||| || |||||||||||     
T  19646108 tttcccttttaatgaaataagtgattttcacatctatttcgttttttattttgtgattttatcgtctttgtgcggcgtcagtttgtttgtcgtctttgtg 19646009  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
     ||||||||||| |||| ||||||| || | ||||||||| | ||| ||||||||||||||    
T  19646008 tgacgttgtttgtctttcttgtttctttgaagtatttgttagattcagattgtcagatcag 19645948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 470
Target Start/End: Original strand, 37425041 - 37425153
Alignment:
Q  358 tatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttg 457  Q
    |||||||||||||||||||||||||| || ||||||||| |  |||        |||||||  |||||||  |||||| ||||||| || ||||||||||    
T  37425041 tatttcccttttattgaaataagtgattttcacatctatgttgttttttctttcgtgattttgtcgtctttgtgcgacgttgttttgtttgtcgtctttg 37425140  T
Q  458 tacgacgttgttt 470  Q
    | |||||||||||    
T  37425141 tgcgacgttgttt 37425153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 523
Target Start/End: Original strand, 32387601 - 32387674
Alignment:
Q  449 tcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||| || |||||||||||||| ||||||  |||||||||||||||| |||  ||||||||| ||||||    
T  32387601 tcgtctttgtgcggcgttgtttgcctttcttgttttattcaggtatttgttcgattc-aattgtcagaccagctt 32387674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 35906401 - 35906479
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||||||| ||||||||||||  ||| |||||||  ||||||||||| || |||| |||| || |||||||||    
T  35906401 ttcgtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttgatcagttcagattatcggatcagctt 35906479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 20146231 - 20146123
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||  |||||||| |||||| ||||||| || |||||||||||||| ||||||||| ||||    | | |||||||| |||||||||||   ||||    
T  20146231 gtgattttgtcgtcttagtgcgacgttgttttgtttgtcgtctttgtacggcgttgtttgtctttcccctcttgttcaggtgtttgttcggtt---attg 20146135  T
Q  512 tcagatcagctt 523  Q
    | ||||||||||    
T  20146134 ttagatcagctt 20146123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 360 - 442
Target Start/End: Original strand, 28500764 - 28500846
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttt 442  Q
    |||||||||||||||||||||||| || |||||||||||| |||        ||||||||||||||||| |||| | ||||||    
T  28500764 tttcccttttattgaaataagtgattttcacatctatttcgttttttattttgtgatttcttcgtcttagtgcggcattgttt 28500846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 519
Target Start/End: Complemental strand, 10924148 - 10924042
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||  |||||| ||| ||| |||||||||||||| |||||||| |||  ||| |||||||  |||| |||||| |||||||  ||||    
T  10924148 gtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttg-ttgtttttcttgtttctctcagatatttgatcggttcaaattg 10924050  T
Q  512 tcagatca 519  Q
    || |||||    
T  10924049 tcggatca 10924042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 519
Target Start/End: Original strand, 28500841 - 28500895
Alignment:
Q  465 ttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||||||| |||| || |||||||| |||||||||||||||| |||||||| ||||    
T  28500841 ttgtttgtctttcttatttcgttcgggtatttgttcggttcagattgtcatatca 28500895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 517
Target Start/End: Complemental strand, 34893923 - 34893854
Alignment:
Q  448 gtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagat 517  Q
    ||||||||||| ||||||||||||  ||| |||||||  |||| |||||| |||||||  ||||||||||    
T  34893923 gtcgtctttgtgcgacgttgtttgtttttcttgtttccctcagctatttgatcggttcatattgtcagat 34893854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 42)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 358 - 523
Target Start/End: Original strand, 37659011 - 37659176
Alignment:
Q  358 tatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttg 457  Q
    |||||||||||||||||||||||||| |||||| |||||||| ||||       |||||||| | |||||| |||||||||||||| |||||||||||||    
T  37659011 tatttcccttttattgaaataagtgatttacacgtctatttcgtttctttttttgtgatttcgttgtcttagtgcgaccttgttttgttcgtcgtctttg 37659110  T
Q  458 tacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||    
T  37659111 tacgacgttgtttgcctttcttgtttcgttcaagtatttgttcggttcagattgtcagatcagctt 37659176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 16937410 - 16937243
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||||||||||| | |||||||||| ||||||||||||||| ||||       |||||||| |||||||| |||||||||||||| ||| |||||||    
T  16937410 tctatttcccttttacttaaataagtgatttacacatctatttcgtttctttttttgtgatttcgtcgtcttagtgcgaccttgttttgttcatcgtctt 16937311  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||| ||||||||||||  |||||||||||||||||||||  |||| |||||||||||||||||    
T  16937310 tgtgcgacattgtttgcctttcgtgtttcgttcaggtatttgtttagttcagattgtcagatcagctt 16937243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 358 - 523
Target Start/End: Complemental strand, 3925758 - 3925594
Alignment:
Q  358 tatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttg 457  Q
    ||||||||||||| | |||||||| | ||||||||||||||| ||||       |||||||| |||||||| ||| |||||||||| |||||||||||||    
T  3925758 tatttcccttttactaaaataagttatttacacatctatttcgtttctttttt-gtgatttcgtcgtcttagtgcaaccttgtttttttcgtcgtctttg 3925660  T
Q  458 tacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    | |||| |||||||||||| ||||||| |||||||||||||||| ||| ||| |||||||||||||    
T  3925659 tgcgaccttgtttgcctttcttgtttcattcaggtatttgttcgattcagatagtcagatcagctt 3925594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 412 - 517
Target Start/End: Complemental strand, 12248729 - 12248624
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| |||||||||||||| |||||||||||||| |||||||||||| |||| ||||||| |||||||||||||||| ||| ||||     
T  12248729 gtgatttcgtcgtcttagtgcgaccttgttttgttcgtcgtctttgtgcgacgttgtttgtctttcttgtttcattcaggtatttgttcgattcagatta 12248630  T
Q  512 tcagat 517  Q
    ||||||    
T  12248629 tcagat 12248624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 358 - 523
Target Start/End: Complemental strand, 32256790 - 32256625
Alignment:
Q  358 tatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttg 457  Q
    |||||||||||||||||||||||||| || |||||||||||| |||        ||||||||  ||||||| |||||  ||||||| || ||||||||||    
T  32256790 tatttcccttttattgaaataagtgattttcacatctatttcgtttttgctttcgtgatttcgccgtcttagtgcgatgttgttttgtttgtcgtctttg 32256691  T
Q  458 tacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    | |||||||||||| |||| |||||| |||| |||||||||||||||  |||||| | ||||||||    
T  32256690 tgcgacgttgtttgtctttcttgttttgttcgggtatttgttcggtttagattgttaaatcagctt 32256625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 9270068 - 9270231
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||| |||        |||||||| | |||||  |||||| ||| ||| ||||||||||||||     
T  9270068 tttcccttttattgaaataagtgattttcacatctatttcgttttttattttgtgatttcgttgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 9270167  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  ||||||||||| ||||||| |||||||| ||||||||    
T  9270168 cgacgttgtttgtttttcttgtttctctcaggtatttgatcggttcagattgtcatatcagctt 9270231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 10042815 - 10042982
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||| ||||||||||||||||||||||| || ||| |||||||| |||         ||||||| |||||||| ||| || ||||||| ||||| |||||    
T  10042815 tctaattcccttttattgaaataagtgattttcacttctatttcgttttttctttcatgatttcgtcgtcttagtgcaacgttgttttgttcgttgtctt 10042914  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
     || ||||||| |||| |||| ||||||||||||||||||||||| ||||  ||||||||||||||||    
T  10042915 agtgcgacgttatttgtctttcttgtttcgttcaggtatttgttcagttcaaattgtcagatcagctt 10042982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 8054822 - 8054711
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||  |||||| ||| ||| |||||||||||||| |||||||||||| |||| |||||||  ||||||||||| ||||||| |||||    
T  8054822 gtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgtctttcttgtttctctcaggtatttgatcggttcagattg 8054723  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  8054722 tcagatcagctt 8054711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 26937572 - 26937735
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||| | |  |||||||||||  ||||        ||||||  |||||||| |||| | ||| ||| ||||||| ||||||     
T  26937572 tttcccttttattgaaataagtaattctcacatctatttagtttctttgattatgattttgtcgtcttagtgcgtcgttggtttgttcgtcgactttgtg 26937671  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    || ||||||||| |||| ||||||||||||||||||| |||||||| |||||||||||||||||    
T  26937672 cggcgttgtttgtctttcttgtttcgttcaggtatttattcggttcagattgtcagatcagctt 26937735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 44295363 - 44295526
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    ||||| |||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  44295363 tttcctttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 44295462  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  ||||||||||| || |||| |||||||||||||||||    
T  44295463 cgacgttgtttgtttttcttgtttctctcaggtatttgatcagttcagattgtcagatcagctt 44295526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 412 - 517
Target Start/End: Complemental strand, 5917757 - 5917652
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| |||||| |||| || |||||||||||||| |||||||||||| ||||  | ||| ||||||||||||||||||||| |||||    
T  5917757 gtgatttcgtcgtcttagtgcgacgttgtgttgttcgtcgtctttgtgcgacgttgtttgtctttcctattttgttcaggtatttgttcggttcagattg 5917658  T
Q  512 tcagat 517  Q
    ||||||    
T  5917657 tcagat 5917652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 12244231 - 12244120
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| || ||||| |||||| ||||||| ||||||  |||||| || ||||||||| | ||||||||||||||||||||||||||| ||| |||||    
T  12244231 gtgatttcgtcatcttagtgcgacgttgttttgttcgtcaactttgtgcggcgttgtttgtcgtttttgtttcgttcaggtatttgttcgattcagattg 12244132  T
Q  512 tcagatcagctt 523  Q
    ||| ||||||||    
T  12244131 tcatatcagctt 12244120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 437 - 523
Target Start/End: Complemental strand, 31713066 - 31712980
Alignment:
Q  437 ttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||| |||||||||||||| |||||||||||| |||| ||| |||||| ||||||||||||||||| |||||||| ||||||||    
T  31713066 ttgttttgttcgtcgtctttgtgcgacgttgtttgtctttcttgcttcgtttaggtatttgttcggttcagattgtcatatcagctt 31712980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 32412837 - 32413000
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || ||||| |||||  |||        |||||||| |||||||  |||||| ||| ||| ||| ||||||||||     
T  32412837 tttcccttttattgaaataagtgattttcacatttattttgttttttatcttgtgatttcgtcgtcttcgtgcgacgttggtttgttcatcgtctttgtg 32412936  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||  ||| ||||||| |||||||||||| | ||||| |||||||||||||||||    
T  32412937 cgatgttgtttgtttttcttgtttctttcaggtatttgattggttcagattgtcagatcagctt 32413000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 358 - 523
Target Start/End: Original strand, 41996590 - 41996753
Alignment:
Q  358 tatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttg 457  Q
    |||||||||||||||||||||||||| || ||||||| || | |||        |||||||| |||||||  |||||| ||| ||| |||||||||||||    
T  41996590 tatttcccttttattgaaataagtgattttcacatctgttacgttttttattttgtgatttcatcgtcttcgtgcgacgttggtttgttcgtcgtctttg 41996689  T
Q  458 tacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    | |||||||  ||| |||| ||| |||  ||||||||||| ||||||| |||||||||||||||||    
T  41996690 tgcgacgtt--ttgtctttcttgattctctcaggtatttgatcggttcagattgtcagatcagctt 41996753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 364 - 520
Target Start/End: Original strand, 3680974 - 3681130
Alignment:
Q  364 ccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgac 463  Q
    |||||||||||||||| ||| || |||||||||||| |||        |||||||  |||| ||| |||||| ||| |||||||||||||||  | ||||    
T  3680974 ccttttattgaaataaatgattttcacatctatttcgttttttattttgtgattttgtcgttttagtgcgacattgatttattcgtcgtcttcatgcgac 3681073  T
Q  464 gttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    |||||||| |||| ||||||| ||| |||||||||||||||  |||||||| |||||    
T  3681074 gttgtttgtctttcttgtttctttctggtatttgttcggtttagattgtcatatcag 3681130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 14327578 - 14327689
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||  |||||||| |||||| ||||||| || ||||||||||| |||||||||||| |||||   ||| ||||| || |||||||||||| |||||    
T  14327578 gtgatttagtcgtcttagtgcgacgttgttttgtttgtcgtctttgtgcgacgttgtttgtcttttcccttttgttcaagtgtttgttcggttcagattg 14327677  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  14327678 tcagatcagctt 14327689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 2628956 - 2629121
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||| ||  |||        |||||||| |||| ||| |||||| || |||| | |||| ||||    
T  2628956 tctatttcccttttattgaaataagtgattttcacatctactttgttt-ttctttcgtgatttcgtcgttttagtgcgacgttattttgtccgtcatctt 2629054  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||| ||||||| |||| |||||||||||||| ||||||| || || |||||||||||||||||    
T  2629055 tgtgcgacattgtttgtctttcttgtttcgttcaggcatttgtttgg-tcagattgtcagatcagctt 2629121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 16938338 - 16938175
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||| ||||||||||||| || |||||||||||  |||         ||||||| |||||||| |||||| ||||| | |||||||| |||||     
T  16938338 tttcccttttgttgaaataagtgattttcacatctattttgttttttctttcatgatttcgtcgtcttagtgcgactttgttgtgttcgtcgtatttgtg 16938239  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |  ||||||||| ||||||| ||| |||| |||||||||||||||| | ||| |||||||||||    
T  16938238 ctgcgttgtttgtcttttttatttagttcgggtatttgttcggttcaggttgccagatcagctt 16938175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 5457170 - 5457281
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||  |||||| ||| ||  ||||||||||| || |||||||||||| |||| |||||||  ||| ||||||| ||||||| |||||    
T  5457170 gtgatttcgtcgtcttcgtgcgacgttggttagttcgtcgtcttcgtgcgacgttgtttgtctttcttgtttctctcaagtatttgatcggttcagattg 5457269  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  5457270 tcagatcagctt 5457281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 516
Target Start/End: Original strand, 31874131 - 31874287
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||  |||||||  ||| || ||| ||| ||||||||||||||     
T  31874131 tttcccttttattgaaataagtgattttcacatctattttgttttttattttgtgattttgtcgtctttgtgcaacgttggtttgttcgtcgtctttgtg 31874230  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcaga 516  Q
    |||| |||||||  ||| |||||||  ||||||||||| ||||||| ||||||||||    
T  31874231 cgacattgtttgtttttcttgtttctctcaggtatttgatcggttcagattgtcaga 31874287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 32061893 - 32062004
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| ||||||  |||||| || ||||||||||| |||| ||||||| |||||   | | |||||||| |||||||||||| |||||    
T  32061893 gtgatttcgtcgtcttagtgcgacgctgttttgtttgtcgtctttgtgcgacattgtttgtcttttccctcttgttcaggtgtttgttcggttcagattg 32061992  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  32061993 tcagatcagctt 32062004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 523
Target Start/End: Original strand, 13864404 - 13864569
Alignment:
Q  358 tatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttg 457  Q
    |||||||||||||||||||||||||| || |||||||||||| |||        ||||||   ||| |||| |||||| ||||||| ||| |  |||||     
T  13864404 tatttcccttttattgaaataagtgattttcacatctatttcgttttttcgttcgtgattctgtcgccttagtgcgacgttgttttgttctttatctttc 13864503  T
Q  458 tacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    | || ||||||||| |||| ||||||  | ||||||||| ||| |||| |||||||||||||||||    
T  13864504 tgcggcgttgtttgtctttcttgttttatgcaggtatttcttcagttcagattgtcagatcagctt 13864569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 23766838 - 23766950
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgcctttttt-gtttcgttcaggtatttgttcggttcggatt 510  Q
    |||||||| || ||||| |||||  || |||| |||||||||||||| ||||||||||||  |||||| | ||| |||| ||||||||||| ||| ||||    
T  23766838 gtgatttcgtcatcttaatgcgaaattattttgttcgtcgtctttgtgcgacgttgtttgtatttttttggttcattcatgtatttgttcgattcagatt 23766937  T
Q  511 gtcagatcagctt 523  Q
    |||||||||||||    
T  23766938 gtcagatcagctt 23766950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 356 - 520
Target Start/End: Complemental strand, 32104909 - 32104745
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||||  |||||||||||||||||| || ||||||| || | |||        |||||||| |||||||  | |||| ||| ||| || ||| ||||    
T  32104909 tctatttcttttttattgaaataagtgattttcacatctgttacgttttttattttgtgatttcgtcgtcttcgtacgacgttggtttgtttgtcatctt 32104810  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    ||| | |||||||||| |||| |||||||  ||||||||||| ||||||| ||||||||||||||    
T  32104809 tgtgcaacgttgtttgtctttcttgtttctctcaggtatttgatcggttcagattgtcagatcag 32104745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 515
Target Start/End: Original strand, 5989677 - 5989832
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    ||||||||||  |||||||||||| || |||||||||||| |||        |||||||  |||| ||| |||||| ||| | | ||||||||||||||     
T  5989677 tttccctttttatgaaataagtgattttcacatctatttcgttttttattttgtgattttgtcgttttagtgcgacgttggtatgttcgtcgtctttgtg 5989776  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcag 515  Q
    || ||||||||| |||| || ||||| ||| |||||| |||||||| |||||||||    
T  5989777 cggcgttgtttgtctttcttatttcgctcaagtatttcttcggttcagattgtcag 5989832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 15665586 - 15665749
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||| ||||||||||||||||| | || |||||||||||| |||         ||||||| |||||||| || ||  |||| || || |||||||||||     
T  15665586 tttcacttttattgaaataagtaattttcacatctatttcgttttttctttcatgatttcgtcgtcttagtgagatgttgtgttgtttgtcgtctttgtg 15665685  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |  ||||||||| || |  ||||| ||||||||||||||||||||| ||||||||| |||||||    
T  15665686 cagcgttgtttgtctatcctgttttgttcaggtatttgttcggttcagattgtcaggtcagctt 15665749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 515
Target Start/End: Complemental strand, 16996958 - 16996801
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||| |||||||||||||||||||| || |||||||||||| |||        |||||||| |||||||  |||||| ||| ||  |||||||||||    
T  16996958 tctattttccttttattgaaataagtgattt-cacatctatttcgttttttattttgtgatttcgtcgtcttcgtgcgacgttggttg-ttcgtcgtctt 16996861  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcag 515  Q
    ||| ||||||||||||  |||  ||||||  ||||||||||| ||| ||| |||||||||    
T  16996860 tgtgcgacgttgtttgtttttcctgtttctctcaggtatttgatcgcttcagattgtcag 16996801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 9992712 - 9992877
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcattt--cnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttg 457  Q
    |||||||||||||||||||||||| || ||||||||||||||||          |||||||| |||||||  |||||| ||| ||| |||||||||||||    
T  9992712 tttcccttttattgaaataagtgattttcacatctatttcattttgtatctcttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttg 9992811  T
Q  458 tacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |  ||| |||||||  ||| |||||||  | || |||||| |||||||  |||||||||| |||||    
T  9992812 tgtgacattgtttgtttttcttgtttctcttagatatttgatcggttcaaattgtcagataagctt 9992877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 370 - 523
Target Start/End: Complemental strand, 7281184 - 7281031
Alignment:
Q  370 attgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtt 469  Q
    |||||||||||||| || |||||||||||  |||        ||||||||  |||| || |||||| ||| ||| |||||||||||||| | || |||||    
T  7281184 attgaaataagtgattttcacatctattttgttttttattttgtgatttcgccgtcatagtgcgacattggtttgttcgtcgtctttgtgcaacattgtt 7281085  T
Q  470 tgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    || ||| |||||||| | |||||||||||||||||  |||||||| ||| ||||    
T  7281084 tgtcttatttgtttcatgcaggtatttgttcggtttagattgtcatatccgctt 7281031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 37129742 - 37129579
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||  ||||||||||||||||||| || |||||||||||| |||        |||||||| ||||||| | ||||| ||| ||  |||||||||||    
T  37129742 tctatttttcttttattgaaataagtgattttcacatctatttcgttt--tattttgtgatttcgtcgtcttgt-gcgacgttggttg-ttcgtcgtctt 37129647  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||| |||||||  ||| |||||||  |||||||||||  || ||| |||||||||||||||||    
T  37129646 tgtgcgacattgtttgtttttcttgtttctctcaggtatttgaacgcttcagattgtcagatcagctt 37129579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 519
Target Start/End: Original strand, 13977502 - 13977614
Alignment:
Q  413 tgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacga------cgttgtttgccttttttgtttcgttcaggtatttgttcggttcg 506  Q
    ||||||| || | ||| |||||| ||||||| ||||||||||||||| ||      ||||||||| |||| ||||||||||||||||||||  ||||||     
T  13977502 tgatttcgtcattttagtgcgacattgttttgttcgtcgtctttgtatgagtatgacgttgtttgtctttcttgtttcgttcaggtatttgaccggttca 13977601  T
Q  507 gattgtcagatca 519  Q
    |||| ||||||||    
T  13977602 gattatcagatca 13977614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 26582903 - 26582793
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| | |||||| |||||  ||| ||||||||||| |||||| |   ||||||||  ||| ||||||||||| | |||||||||| ||| |||||    
T  26582903 gtgatttcgttgtcttagtgcgatgttggtttattcgtcgactttgtgcattgttgtttgt-tttcttgtttcgttcggatatttgttcgattcagattg 26582805  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  26582804 tcagatcagctt 26582793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 36545848 - 36545685
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||| |||        |||||||  |||||||  |||||| ||| ||| || |||||||||||     
T  36545848 tttcccttttattgaaataagtgattttcacatctatttcgttttttattttgtgattttgtcgtctttgtgcgacgttggtttgttagtcgtctttgtg 36545749  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||| | ||  ||| |  ||||  ||||||||||| ||| ||| | ||||||||| |||||    
T  36545748 cgacgttctatgtttttctattttctctcaggtatttgatcgattcaggttgtcagattagctt 36545685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 523
Target Start/End: Complemental strand, 11298757 - 11298664
Alignment:
Q  430 tgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||| ||||||| || ||||||||||| || ||||||||| |||||   | | |||||||| ||||||||| || ||||||||||| |||||    
T  11298757 tgcgacgttgttttgtttgtcgtctttgtgcggcgttgtttgtcttttccctcttgttcaggtgtttgttcggatcagattgtcagattagctt 11298664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 477
Target Start/End: Complemental strand, 18190859 - 18190794
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgcctttt 477  Q
    |||||||| |||||||| ||||||| |||||| || || |||||||| |||||||||||| |||||    
T  18190859 gtgatttcgtcgtcttagtgcgaccctgttttgtttgttgtctttgtgcgacgttgtttgtctttt 18190794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 1215354 - 1215245
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| || ||| ||||||| || ||| ||||||| |||||||||||  ||||||  ||  ||||||||  ||||||| ||| |||||    
T  1215354 gtgatttcgtcgtcttagtgtgacgttgttttgtttgtcatctttgtgcgacgttgtttatctttttcctt--gttcaggtggttgttcgattcagattg 1215257  T
Q  512 tcagatcagctt 523  Q
    ||| ||||||||    
T  1215256 tcaaatcagctt 1215245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 7269479 - 7269368
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||  ||||| || |||||| ||| ||| || ||||||||||| | || ||||||| |||| ||||||| | || ||||||||||||||  |||||    
T  7269479 gtgattttgtcgtcatagtgcgacgttggtttgttagtcgtctttgtgcaacattgtttgtctttcttgtttcatgcaagtatttgttcggtttagattg 7269380  T
Q  512 tcagatcagctt 523  Q
    ||| ||| ||||    
T  7269379 tcatatctgctt 7269368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 14115843 - 14115732
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| || ||||  || ||| ||| ||| ||||| |||||| | |||  |||||||  ||| |||||||  ||||||||||| ||||||| |||||    
T  14115843 gtgatttcgtcatcttcgtgtgacgttggtttgttcgttgtctttttgcgaaattgtttgtttttcttgtttctctcaggtatttgatcggttcagattg 14115744  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  14115743 tcagatcagctt 14115732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 31147811 - 31147744
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtca 514  Q
    ||||||||||| || ||| |||| ||  |||||||||||| |||||||||||||||||||| | ||||||    
T  31147811 ttcgtcgtcttagtgcgaggttggtt--cttttttgtttcattcaggtatttgttcggttcagtttgtca 31147744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 517
Target Start/End: Original strand, 17019217 - 17019322
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||  |||||||| |||||| ||| ||| |||||||||||||| |   |||||||| |||| ||||||| |  | |||||||||||| || ||||     
T  17019217 gtgatttggtcgtcttagtgcgacgttggtttgttcgtcgtctttgtgcattgttgtttgtctttcttgtttcatctaagtatttgttcggatcagattt 17019316  T
Q  512 tcagat 517  Q
    ||||||    
T  17019317 tcagat 17019322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 517
Target Start/End: Original strand, 17549654 - 17549759
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||  |||||||| |||||| ||| ||| |||||||||||||| |   |||||||| |||| ||||||| |  | |||||||||||| || ||||     
T  17549654 gtgatttggtcgtcttagtgcgacgttggtttgttcgtcgtctttgtgcattgttgtttgtctttcttgtttcatctaagtatttgttcggatcagattt 17549753  T
Q  512 tcagat 517  Q
    ||||||    
T  17549754 tcagat 17549759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 55)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 358 - 523
Target Start/End: Complemental strand, 19581071 - 19580906
Alignment:
Q  358 tatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttg 457  Q
    |||||||||||||||||||||||||| || || |||||||||||||        |||||||  |||||||| |||||| ||||||| |||||||||||||    
T  19581071 tatttcccttttattgaaataagtgattttcatatctatttcattttttctttcgtgattttgtcgtcttagtgcgacattgttttgttcgtcgtctttg 19580972  T
Q  458 tacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    | ||||||||||||  |||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  19580971 tgcgacgttgtttgttttttttgttttgttcaggtatttgttcgattcagattgtcagatcagctt 19580906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 7443637 - 7443470
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||| |||||||||||||||||| | || |||||||||||| |||        ||||||||  ||||||| |||||| ||||||| |||||||||||    
T  7443637 tctattttccttttattgaaataagtaattttcacatctatttcgtttttgctttcgtgatttcgccgtcttagtgcgacgttgttttgttcgtcgtctt 7443538  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||||||||||| |||| |||||| |||| |||||||||||||||| |||||| ||||||||||    
T  7443537 tgtgcgacgttgtttgtctttcttgttttgttcgggtatttgttcggttcagattgtaagatcagctt 7443470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 7640427 - 7640260
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || ||||||| || | |||        |||||||| |||||||  |||||| ||| ||| |||||||||||    
T  7640427 tctatttcccttttattgaaataagtgattttcacatctgttacgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctt 7640328  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||||||||||| |||| |||||||  ||||||||||| ||||||| |||||||||||||||||    
T  7640327 tgtgcgacgttgtttgtctttcttgtttctctcaggtatttgatcggttcagattgtcagatcagctt 7640260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 26491346 - 26491511
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||        |||||||| |||||||| |||||| ||||||| ||  |||||||    
T  26491346 tctatttcccttttattgaaataagtgattt-cacatctatttcattttttctttcgtgatttcgtcgtcttagtgcgacgttgttttgtttttcgtctt 26491444  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||  |||||||||||  ||| |||||||||||| ||||||||||| ||| |||||||||||||||||    
T  26491445 tgtgtgacgttgtttgtgtttcttgtttcgttca-gtatttgttcgattcagattgtcagatcagctt 26491511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 15674032 - 15673872
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| |||| |||||||||| ||||       |||||||| |||||||| ||||||||        ||||||||||    
T  15674032 tctatttcccttttattgaaataagtgatttacccatctatttcgtttctttttttgtgatttcatcgtcttagtgcgacctg-------tcgtcgtctt 15673940  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||||||||||| |||| ||||||||||||||| |||||||| ||| |||||||| ||||||||    
T  15673939 tgtgcgacgttgtttgtctttcttgtttcgttcaggtttttgttcgattcagattgtcatatcagctt 15673872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 24500586 - 24500697
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||  |||||||| ||||||||| |||| |||||||||||||| |||||||||||| |||| |||||| ||||| ||||||||||||||| ||||     
T  24500586 gtgatttggtcgtcttagtgcgaccttattttgttcgtcgtctttgtgcgacgttgtttgtctttcttgttttgttcatgtatttgttcggttcagatta 24500685  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  24500686 tcagatcagctt 24500697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 360 - 519
Target Start/End: Original strand, 19953617 - 19953776
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||| |||        || ||||| |||||||| | |||| |||| || || |||||||||||     
T  19953617 tttcccttttattgaaataagtgattttcacatctatttcgttttttctttcgtaatttcgtcgtcttagtacgacgttgtgttgtttgtcgtctttgtg 19953716  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    || ||||||||| |||| |||||| ||||| ||||||||||||||| |||||||||||||    
T  19953717 cggcgttgtttgtctttcttgttttgttcaagtatttgttcggttcagattgtcagatca 19953776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 25623112 - 25622948
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||| |||||| ||||||| ||||||||||||||     
T  25623112 tttcccttttattgaaataagtgattttcacatctattttgttttttctttcgtgatttcgtcgtcttagtgcgacattgttttgttcgtcgtctttgtg 25623013  T
Q  460 cgacgttgtttgccttt-tttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    || ||||||||| ||||  ||||||   |||||||||| |||||||| |||||||| ||||||||    
T  25623012 cggcgttgtttgtctttccttgttttactcaggtattttttcggttcagattgtcatatcagctt 25622948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 421 - 523
Target Start/End: Original strand, 10589203 - 10589305
Alignment:
Q  421 tcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    |||||||  |||||| ||||||| |||||||||||||| |||||||||||| |||| |||||| |||| |||||||||||||||| || |||||||||||    
T  10589203 tcgtctttgtgcgacgttgttttgttcgtcgtctttgtgcgacgttgtttgtctttcttgttttgttcgggtatttgttcggttcagagtgtcagatcag 10589302  T
Q  521 ctt 523  Q
    |||    
T  10589303 ctt 10589305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 519
Target Start/End: Complemental strand, 16880032 - 16879873
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || ||||| |||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  16880032 tttcccttttattgaaataagtgattttcacatttattttgttttttatcttgtgatttcatcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 16879933  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||||||||||||  ||| |||||||  ||||||||||| ||||||| |||||||||||||    
T  16879932 cgacgttgtttgtttttcttgtttctctcaggtatttgatcggttcagattgtcagatca 16879873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 519
Target Start/End: Complemental strand, 16992165 - 16992006
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || ||||| |||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  16992165 tttcccttttattgaaataagtgattttcacatttattttgttttttatcttgtgatttcatcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 16992066  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||||||||||||  ||| |||||||  ||||||||||| ||||||| |||||||||||||    
T  16992065 cgacgttgtttgtttttcttgtttctctcaggtatttgatcggttcagattgtcagatca 16992006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 25516537 - 25516702
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||        ||||||||||||||||  |||||| ||| ||  |||||||||||    
T  25516537 tctatttcccttttattgaaataagtgattt-cacatctatttcgttttttattttgtgatttcttcgtcttcgtgcgacgttggttg-ttcgtcgtctt 25516634  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||| |||||||  ||| |||||||  ||||||||||| ||| ||| |||||||||||||||||    
T  25516635 tgtgcgacattgtttgtttttcttgtttctctcaggtatttgatcgcttcagattgtcagatcagctt 25516702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 25771492 - 25771655
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  25771492 tttcccttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 25771591  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  ||||||||||| || |||| |||||| ||||||||||    
T  25771592 cgacgttgtttgtttttcttgtttctctcaggtatttgatcagttcagattgttagatcagctt 25771655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 27024206 - 27024043
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  27024206 tttcccttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacattggtttgttcgtcgtctttgtg 27024107  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  ||||||||||| ||  ||| |||||||||||||||||    
T  27024106 cgacgttgtttgtttttcttgtttctctcaggtatttgatcaattcagattgtcagatcagctt 27024043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 37883696 - 37883863
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||||| ||||||| |||||||||| ||  ||||||||||| |||        ||| |||| | |||||| |||||| ||||||| |||||||||||    
T  37883696 tctatttcctttttattaaaataagtgattttaacatctatttcgttttttctttcgtggtttcgttgtcttagtgcgacgttgttttgttcgtcgtctt 37883795  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||| |||||||| |||| |||||||||| | ||||||||||| ||| |||||||| ||||||||    
T  37883796 tgtgcgatgttgtttgtctttcttgtttcgttgacgtatttgttcgattcagattgtcatatcagctt 37883863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 363 - 519
Target Start/End: Original strand, 13268623 - 13268778
Alignment:
Q  363 cccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacga 462  Q
    ||||||| ||||||||||||| || |||||||||||| |||        ||| |||  |||||||| |||||| ||||||| |||||||||||||| |||    
T  13268623 cccttttgttgaaataagtgattttcacatctatttcgttt-ttctttcgtggttttgtcgtcttagtgcgacgttgttttgttcgtcgtctttgtgcga 13268721  T
Q  463 cgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||||||||| |||||| |||||||  |||||||| |||| ||| |||||||||||||    
T  13268722 cgttgtttgtctttttcgtttcgtctaggtatttattcgattcagattgtcagatca 13268778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 416 - 523
Target Start/End: Original strand, 44951522 - 44951629
Alignment:
Q  416 tttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcag 515  Q
    |||| |||||||  |||||| ||| ||| |||||||||||||||||||||||||||  ||| |||||||  ||||||||||| ||||||| |||||||||    
T  44951522 tttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtacgacgttgtttgtttttcttgtttctctcaggtatttgatcggttcagattgtcag 44951621  T
Q  516 atcagctt 523  Q
    ||||||||    
T  44951622 atcagctt 44951629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 437 - 523
Target Start/End: Complemental strand, 4878726 - 4878640
Alignment:
Q  437 ttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||| |||||||||||||| |||||||||||| |||| ||| |||||| ||||||||||||||||| |||||||| ||||||||    
T  4878726 ttgttttgttcgtcgtctttgtgcgacgttgtttgtctttcttgcttcgtttaggtatttgttcggttcagattgtcatatcagctt 4878640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 27191406 - 27191241
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||        |||||||| |||||||  | |||| ||| ||  |||||||||||    
T  27191406 tctatttcccttttattgaaataagtgattt-cacatctatttcgttttttattttgtgatttcgtcgtcttcgtacgacgttggttg-ttcgtcgtctt 27191309  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| |||||||  ||||||||||| ||| ||| |||||||||||||||||    
T  27191308 tgtgcgacgttgtttgtttttcttgtttctctcaggtatttgatcgcttcagattgtcagatcagctt 27191241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 27841220 - 27841055
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||        |||||||| |||||||  | |||| ||| ||  |||||||||||    
T  27841220 tctatttcccttttattgaaataagtgattt-cacatctatttcgttttttattttgtgatttcgtcgtcttcgtacgacgttggttg-ttcgtcgtctt 27841123  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| |||||||  ||||||||||| ||| ||| |||||||||||||||||    
T  27841122 tgtgcgacgttgtttgtttttcttgtttctctcaggtatttgatcgcttcagattgtcagatcagctt 27841055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 519
Target Start/End: Original strand, 29734233 - 29734396
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||| |||||||  ||        |||||||  |||||||| || ||| ||||||| || |||||| |    
T  29734233 tctatttcccttttattgaaataagtgattttcacacctatttcgctttttctttcgtgattttgtcgtcttagtgtgacgttgttttgtttgtcgtcgt 29734332  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    |||||||||||||||| | || | |||||||||| | ||||||||| ||| |||||||||||||    
T  29734333 tgtacgacgttgtttgtccttctggtttcgttcaaggatttgttcgattcagattgtcagatca 29734396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 356 - 522
Target Start/End: Original strand, 40125432 - 40125598
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||| |||||||||||||| |||| || |||||||||||  |||        |||||||  || ||||| ||| || ||||||| ||  |||||||    
T  40125432 tctatttctcttttattgaaatacgtgattttcacatctattttgttttttattttgtgattttgtcatcttagtgcaacgttgttttgtttttcgtctt 40125531  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagct 522  Q
    ||| ||||||| |||| |||| ||||||||||||||||||| |||| ||| ||||||||||||||||    
T  40125532 tgtgcgacgttctttgtctttcttgtttcgttcaggtatttattcgattcagattgtcagatcagct 40125598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 43566918 - 43567083
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||||| |||||||||||||||||| || |||||||||||| |||        |||||||| |||||||  |||||| ||| ||  |||||||||||    
T  43566918 tctatttcctttttattgaaataagtgattt-cacatctatttcgttttttattttgtgatttcgtcgtcttcgtgcgacgttggttg-ttcgtcgtctt 43567015  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| |||||||  ||||||||||  ||| ||| |||||||||||||||||    
T  43567016 tgtgcgacgttgtttgtttttcttgtttctctcaggtatttaatcgcttcagattgtcagatcagctt 43567083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 364 - 512
Target Start/End: Complemental strand, 29812678 - 29812530
Alignment:
Q  364 ccttttattgaaataagtgacttacacatctatttcatttcnnnnnnn-gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacga 462  Q
    |||||||||||||||||||| || |||||||||||| |||         |||||||| |||||||| |||||| | ||||| |||||||||||||| ||     
T  29812678 ccttttattgaaataagtgatttccacatctatttcgtttttttctttcgtgatttcgtcgtcttagtgcgacgt-gttttgttcgtcgtctttgtgcgg 29812580  T
Q  463 cgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgt 512  Q
     |||||||  |||| ||||||| ||||||||| |||||||||||||||||    
T  29812579 tgttgtttttctttcttgtttcattcaggtatgtgttcggttcggattgt 29812530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 364 - 520
Target Start/End: Complemental strand, 9715607 - 9715451
Alignment:
Q  364 ccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgac 463  Q
    |||||||||||||||||||| || |||||||||||| |||        |||||||| |||||||| | | || ||| ||| || ||| ||||||| || |    
T  9715607 ccttttattgaaataagtgattttcacatctatttcgttttttattttgtgatttcgtcgtcttagtacaacgttgatttgtttgtcatctttgtgcggc 9715508  T
Q  464 gttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
     ||||||| |||| |||||||||||||||||||||| |||||  ||||||| |||||    
T  9715507 attgtttgtctttcttgtttcgttcaggtatttgtttggttcaaattgtcatatcag 9715451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 421 - 520
Target Start/End: Complemental strand, 43929306 - 43929207
Alignment:
Q  421 tcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    |||||||  |||||| ||| ||| |||||||||||||| |||||||||||| |||| |||||||  ||||||||||| ||||||| |||||| |||||||    
T  43929306 tcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgtctttcttgtttctatcaggtatttgatcggttcagattgttagatcag 43929207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 5930470 - 5930633
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||  ||||||||| || |||||||||||| |||        |||||||| |||||||  |||||  ||| ||| |||||||| |||||     
T  5930470 tttcccttttatttcaataagtgattttcacatctatttcgttttttattttgtgatttcgtcgtcttcgtgcgatgttggtttgttcgtcgtttttgtg 5930569  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  ||| ||||||| ||||||| |||||| ||||||||||    
T  5930570 cgacgttgtttgtttttcttgtttctatcatgtatttgatcggttcagattgtgagatcagctt 5930633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 25237393 - 25237235
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||| ||||||||||| | || |||||||||||| |||         ||||||| |||||||| |||||| ||||||| ||||||||||||||     
T  25237393 tttcccttttgttgaaataagttattttcacatctatttcgttttttctttcatgatttcgtcgtcttagtgcgacgttgttttgttcgtcgtctttgtg 25237294  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||| |||||||     ||| |||||||| |||||||||||| ||| | ||| |||||||||||    
T  25237293 cgacattgtttg-----tttttttcgttcgggtatttgttcgattcaggttgccagatcagctt 25237235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 356 - 517
Target Start/End: Original strand, 38822118 - 38822276
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||| ||||||||||||| || |||||||||||| |||        |||||||| |||||||  |||||| ||| ||  |||||||||||    
T  38822118 tctatttcccttttgttgaaataagtgattttcacatctatttcgttt--tattttgtgatttcgtcgtcttcgtgcgacgttggttg-ttcgtcgtctt 38822214  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagat 517  Q
    ||| ||||||||||||  ||| |||||||  ||||||||||| ||| ||| ||||| |||||    
T  38822215 tgtgcgacgttgtttgtttttcttgtttctctcaggtatttgatcgcttcagattgccagat 38822276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 412 - 519
Target Start/End: Complemental strand, 5071385 - 5071278
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| || ||||| ||| || ||||||| || ||||||||||| |||| ||||||| ||||| | | | |||||||| |||||||||||| |||||    
T  5071385 gtgatttcgtcatcttagtgcaacgttgttttgtttgtcgtctttgtgcgactttgtttgtcttttctctcttgttcaggtgtttgttcggttcagattg 5071286  T
Q  512 tcagatca 519  Q
    ||||||||    
T  5071285 tcagatca 5071278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 437 - 516
Target Start/End: Complemental strand, 11550586 - 11550507
Alignment:
Q  437 ttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcaga 516  Q
    ||||||| || ||||||||||| || |||| |||| |||| |||||||||||| ||||||||||||||| ||||||||||    
T  11550586 ttgttttgtttgtcgtctttgtgcggcgttttttgtctttcttgtttcgttcaagtatttgttcggttcagattgtcaga 11550507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 471
Target Start/End: Original strand, 3390479 - 3390590
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  3390479 tttcccttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 3390578  T
Q  460 cgacgttgtttg 471  Q
    ||||||||||||    
T  3390579 cgacgttgtttg 3390590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 6089936 - 6090100
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||        |||||||| |||||||  |||||  |||  || ||| || ||||    
T  6089936 tctatttcccttttattgaaataagtgattttcacatctatttcgttt--tattttgtgatttcgtcgtcttcgtgcgatgttg-gttgttcatcttctt 6090032  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| |||||||  |||| |||||| ||| ||| |||||||||||||||||    
T  6090033 tgtgcgacgttgtttgtttttcttgtttctctcagatatttgatcgcttcagattgtcagatcagctt 6090100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 44167780 - 44167615
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||| ||||| |||||||||||| | || |||||||||||| |||        |||||||| |||||||  |||||| ||| ||  |||||||||||    
T  44167780 tctattttcctttaattgaaataagtaattt-cacatctatttcgttttttattttgtgatttcgtcgtcttcgtgcgacgttggttg-ttcgtcgtctt 44167683  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| |||||||| |||| |||||| ||| |||  ||||||||||||||||    
T  44167682 tgtgcgacgttgtttgtttttcttgtttcgctcagctatttgatcgcttcaaattgtcagatcagctt 44167615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 483
Target Start/End: Original strand, 41841997 - 41842118
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    ||||||||||||||||||||| || || |||||||||||| ||||       |||||||| |||||||| |||||| ||| ||| ||||||||||||||     
T  41841997 tttcccttttattgaaataagcgattttcacatctatttcgtttcttttt--gtgatttcgtcgtcttagtgcgacgttggtttgttcgtcgtctttgtg 41842094  T
Q  460 cgacgttgtttgccttttttgttt 483  Q
    |  ||||||||| |||| ||||||    
T  41842095 ctgcgttgtttgtctttcttgttt 41842118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 423 - 523
Target Start/End: Complemental strand, 17118817 - 17118718
Alignment:
Q  423 gtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagct 522  Q
    |||||| |||||| ||||||| |||||||||||||| ||  |||||||| |||||||||||||||  ||||||| |||  ||  ||||||||||||||||    
T  17118817 gtcttagtgcgacgttgttttgttcgtcgtctttgtgcggtgttgtttgtcttttttgtttcgtttgggtatttattc-ctttagattgtcagatcagct 17118719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 17068921 - 17068846
Alignment:
Q  421 tcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtattt 496  Q
    |||||||| |||||| ||||||| |||||||||||||| ||  |||||||| |||||||||||||||  |||||||    
T  17068921 tcgtcttagtgcgacgttgttttgttcgtcgtctttgtgcggtgttgtttgtcttttttgtttcgtttgggtattt 17068846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 3465061 - 3465139
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||||||| ||||||||||||  ||| |||||||  ||| ||||||| ||| ||| |||||||||||||||||    
T  3465061 ttcgtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaagtatttgatcgcttcagattgtcagatcagctt 3465139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 523
Target Start/End: Complemental strand, 16720830 - 16720752
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||||  |||||||||||  ||| ||||| | |||||||||||||||||||| |||| ||| ||||||||    
T  16720830 ttcgtcgtctttgtgtgacgttgtttgtttttcttgttactttcaggtatttgttcggttcagattatcaaatcagctt 16720752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 463 - 517
Target Start/End: Original strand, 20036532 - 20036586
Alignment:
Q  463 cgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagat 517  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||    
T  20036532 cgttgtttgtctttcttgtttcgttcaggtatttgttcagttcagattgtcagat 20036586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 465 - 523
Target Start/End: Original strand, 28228374 - 28228432
Alignment:
Q  465 ttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||| |||| |||||||||||| ||||||||||||||| |||||||| ||||||||    
T  28228374 ttgtttgtctttcttgtttcgttcaagtatttgttcggttcagattgtcatatcagctt 28228432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 36507974 - 36508139
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||| |||||||||||||||||| | || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||  ||||| |||||    
T  36507974 tctattttccttttattgaaataagtaattt-cacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggttg-ttcgttgtctt 36508071  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| |||||||  ||||||||||| ||  ||| |||||||||||||||||    
T  36508072 tgtgcgacgttgtttgtttttcttgtttctctcaggtatttgatcacttcagattgtcagatcagctt 36508139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 42105823 - 42105781
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctattt 398  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  42105823 tctatttcccttttattgaaataagtgactttcacatctattt 42105781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 424 - 514
Target Start/End: Original strand, 44441493 - 44441583
Alignment:
Q  424 tcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtca 514  Q
    ||||| |||||| ||  ||| ||||||||||| ||||| ||||||||| ||| |||||||||||||| |||||||||| ||  ||||||||    
T  44441493 tcttagtgcgacgtttgtttgttcgtcgtcttcgtacggcgttgtttgtcttatttgtttcgttcagatatttgttcgatttagattgtca 44441583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 470
Target Start/End: Original strand, 10589082 - 10589196
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||        ||||||||| ||||||| || ||| ||||||| |||  ||||||    
T  10589082 tctatttcccttttattgaaataagtgattttcacatctatttcgtttttgctttcgtgatttctccgtcttagtgtgacgttgttttgttctccgtctt 10589181  T
Q  456 tgtacgacgttgttt 470  Q
     ||  ||||||||||    
T  10589182 agtgtgacgttgttt 10589196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 2251360 - 2251251
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| ||||||  |||||| || ||||||||||| |||||||||||| |||||   ||  ||| |||| |||||||  ||| |||||    
T  2251360 gtgatttcgtcgtcttagtgcgacgctgttttgtttgtcgtctttgtgcgacgttgtttgtcttttccctt--gttgaggtgtttgttcaattcagattg 2251263  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  2251262 tcagatcagctt 2251251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 504
Target Start/End: Original strand, 11931013 - 11931105
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggtt 504  Q
    |||||||| |||||||| || ||| ||| ||| ||||| ||||| ||| |  |||||||| ||||||||||||||| || |||||||||||||    
T  11931013 gtgatttcatcgtcttagtgtgacgttggtttgttcgttgtcttcgtaaggagttgtttgtcttttttgtttcgtttagatatttgttcggtt 11931105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 17074918 - 17074843
Alignment:
Q  421 tcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtattt 496  Q
    |||||||| |||||| ||||||| | |||||||||||| ||  |||||||| |||||||||||||||  |||||||    
T  17074918 tcgtcttagtgcgacgttgttttgtccgtcgtctttgtgcggtgttgtttgtcttttttgtttcgtttgggtattt 17074843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 471
Target Start/End: Original strand, 3603036 - 3603143
Alignment:
Q  364 ccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgac 463  Q
    |||||| ||||||||||||| || || ||||||||| |||        |||||||| |||||||  |||||| ||| ||| |||||||||||||| ||||    
T  3603036 ccttttcttgaaataagtgattttcatatctatttcgttttttattttgtgatttcatcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgac 3603135  T
Q  464 gttgtttg 471  Q
    ||||||||    
T  3603136 gttgtttg 3603143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 41176990 - 41177068
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||||||| ||||||||||||  ||| |||||||  ||| ||||||| ||| |||  ||||||||||||||||    
T  41176990 ttcgtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaagtatttgatcgcttcaaattgtcagatcagctt 41177068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 17095491 - 17095416
Alignment:
Q  421 tcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtattt 496  Q
    |||||||  |||||| ||||||| |||||||||||||| |   |||||||| |||||||||||||||  |||||||    
T  17095491 tcgtctttgtgcgacgttgttttgttcgtcgtctttgtgcagtgttgtttgtcttttttgtttcgtttgggtattt 17095416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 399
Target Start/End: Original strand, 34480003 - 34480042
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttc 399  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  34480003 tttcccttttattgaaataagtgattttcacatctatttc 34480042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 466
Target Start/End: Original strand, 35353742 - 35353796
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgtt 466  Q
    |||||||| |||||||| |||||| ||||||| || ||||||||||| |||||||    
T  35353742 gtgatttcgtcgtcttagtgcgacgttgttttgtttgtcgtctttgtgcgacgtt 35353796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 470
Target Start/End: Original strand, 10589171 - 10589224
Alignment:
Q  417 ttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgttt 470  Q
    |||| ||||||| || ||| ||||||| |||||||||||||| |||||||||||    
T  10589171 ttctccgtcttagtgtgacgttgttttgttcgtcgtctttgtgcgacgttgttt 10589224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 523
Target Start/End: Complemental strand, 42105714 - 42105669
Alignment:
Q  478 ttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||||||||||||||||| |||  ||||||| ||||||||    
T  42105714 ttgtttcgttcaggtatttgttcgattcaaattgtcaaatcagctt 42105669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 10744682 - 10744793
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||||| ||||||||||||||||| |||||    
T  10744682 gtgatttcgtcgtcttagtgcgaccttgttttgttcgtcgtctttgtgcgacgttgtttgcctttcttggttcgtttaggtatttgttcggttcagattg 10744781  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  10744782 tcagatcagctt 10744793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 23843495 - 23843328
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||||||||||||| |||||||||| || ||||||| || | |||        |||||||| |||||||  |||||| ||| ||| |||||||||||    
T  23843495 tctatttcccttttattaaaataagtgattttcacatcttttacgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctt 23843396  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||||||||||| |||| |||||||  | ||||||||| ||||||| |||||||||||||||||    
T  23843395 tgtgcgacgttgtttgtctttcttgtttctcttaggtatttgatcggttcagattgtcagatcagctt 23843328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 360 - 520
Target Start/End: Complemental strand, 13234175 - 13234015
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  13234175 tttcccttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 13234076  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    ||||||||||||  ||| |||||||  ||||||||||| |||||||  |||||||||||||    
T  13234075 cgacgttgtttgtttttcttgtttctctcaggtatttgatcggttcaaattgtcagatcag 13234015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 452 - 523
Target Start/End: Original strand, 20496332 - 20496403
Alignment:
Q  452 tctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  20496332 tctttgtacgactttgtttgtcttttttgttttgttcaggtatttgttcggttcagattgtcagatcagctt 20496403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 360 - 519
Target Start/End: Original strand, 20845055 - 20845214
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||| |||        |||||||  || ||||  |||||| ||| ||| ||||||||||||||     
T  20845055 tttcccttttattgaaataagtgattttcacatctatttcgttttttattttgtgattttgtcatcttcgtgcgacattggtttgttcgtcgtctttgtg 20845154  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||||| ||||||  ||| |||||||  |||| |||||| ||||||| |||||||||||||    
T  20845155 cgacgctgtttgtttttcttgtttctctcagatatttgatcggttcagattgtcagatca 20845214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 32457699 - 32457848
Alignment:
Q  366 ttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgt 465  Q
    ||||||||||||||||||||| ||||| ||||||||||        |||||||| |||||||  |||||| ||| ||| |||||||||||||| |||| |    
T  32457699 ttttattgaaataagtgactttcacatgtatttcattttttattttgtgatttcgtcgtcttcgtgcgacgttgatttgttcgtcgtctttgtgcgacat 32457798  T
Q  466 tgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcaga 516  Q
    |||||   ||| |||||||  ||||||||||| ||||||| ||||||||||    
T  32457799 tgttt-attttcttgtttctctcaggtatttgatcggttcagattgtcaga 32457848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 412 - 520
Target Start/End: Complemental strand, 4663835 - 4663727
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||| |||||| || |||| |||||| ||||||| |||| ||||||   ||| |||||||||||||||||||||| ||||| |||||    
T  4663835 gtgatttcgtcgtcttagtgcgacgttattttgttcgtcatctttgtgcgactttgtttttttttattgtttcgttcaggtatttgtttggttctgattg 4663736  T
Q  512 tcagatcag 520  Q
    ||| |||||    
T  4663735 tcatatcag 4663727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 519
Target Start/End: Original strand, 8644292 - 8644451
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||  || |||||||||||| |||        |||||||  || ||||| |||||| ||||  | || |||||||||||     
T  8644292 tttcccttttattgaaataagtgtttttcacatctatttcgttttttcttttgtgattttgtcatcttagtgcgacattgtgctgttggtcgtctttgtg 8644391  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    || ||||| ||| |||| |||||| ||||||||||||||| ||||| ||||||| |||||    
T  8644392 cggcgttgcttgtctttcttgttttgttcaggtatttgtttggttcagattgtctgatca 8644451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 415 - 519
Target Start/End: Complemental strand, 12652212 - 12652105
Alignment:
Q  415 atttcttcgtcttattgcgaccttgtt---ttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    ||||| ||||||||||||||| |||||   || |||||||| ||| | ||| |||||||  |||| |||||||||||| |||||||||||||| ||||||    
T  12652212 atttcatcgtcttattgcgacgttgttgttttgttcgtcgtatttctgcgatgttgtttttctttcttgtttcgttcatgtatttgttcggttaggattg 12652113  T
Q  512 tcagatca 519  Q
    ||||||||    
T  12652112 tcagatca 12652105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 356 - 520
Target Start/End: Original strand, 19759831 - 19759995
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || ||||| | || | |||        |||||||| || ||||   ||||| ||| ||| ||| |||||||    
T  19759831 tctatttcccttttattgaaataagtgattttcacatttgttacgttttttattttgtgatttcgtcatcttcgagcgacgttggtttgttcatcgtctt 19759930  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    ||| ||||||||||||  ||| |||||||  ||| ||||||| ||||||| ||||||||||||||    
T  19759931 tgtgcgacgttgtttgtatttcttgtttctctcatgtatttgatcggttcagattgtcagatcag 19759995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 363 - 519
Target Start/End: Original strand, 32804345 - 32804501
Alignment:
Q  363 cccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacga 462  Q
    ||||||||||||||||||||| || ||||||| |||  |||        |||||||| |||||||| || ||  ||| ||| ||| ||||||||||| |     
T  32804345 cccttttattgaaataagtgattttcacatcttttttgttttttattttgtgatttcatcgtcttagtgagatgttggtttgttcctcgtctttgtatgg 32804444  T
Q  463 cgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||||||||| |||| |||||||||||| ||||||||| | ||| |||||| ||||||    
T  32804445 cgttgtttgtctttcttgtttcgttcatgtatttgtttgattcagattgtgagatca 32804501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 12576549 - 12576385
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||||||||| |||||||||||||| || |||||||||||| |||        |||||| | |||||||  || ||| ||| ||  |||||||||||    
T  12576549 tctatttccctttaattgaaataagtgattttcacatctatttcgttt--tattttgtgattccgtcgtctttgtgtgacgttggttg-ttcgtcgtctt 12576453  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||  |||||||  ||||||||||| ||| ||| |||||||||||||||||    
T  12576452 tgtgcgacgttgtttgttttccttgtttctctcaggtatttgatcgcttcagattgtcagatcagctt 12576385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 11426073 - 11426151
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||||||| ||||||||||||  ||| |||||||  ||||||||||| ||  ||| |||||||||||||||||    
T  11426073 ttcgtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttgatctcttcagattgtcagatcagctt 11426151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 31748005 - 31748167
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    ||||| ||| |||||||||||| |||| |||||||||||| |||        ||||||||  ||||||  |||||| ||| ||| || |||||||||||     
T  31748005 tttccttttaattgaaataagt-actttcacatctatttcgttttttattttgtgatttcgacgtcttcgtgcgacattggtttctttgtcgtctttgtg 31748103  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  ||| ||||||| || || | |||||||||||||||||    
T  31748104 cgacgttgtttgtttttcttgtttctctcatgtatttgatcagtacagattgtcagatcagctt 31748167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 521
Target Start/End: Original strand, 34020708 - 34020811
Alignment:
Q  416 tttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcag 515  Q
    |||| |||||||| ||||||  |||||| || ||||||||||||||||||||||||  |||||  | | |||||||| ||||||| | || |||||||||    
T  34020708 tttcgtcgtcttagtgcgacgctgttttgtttgtcgtctttgtacgacgttgtttg--tttttcctcttgttcaggtgtttgttcagatcagattgtcag 34020805  T
Q  516 atcagc 521  Q
    ||||||    
T  34020806 atcagc 34020811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 520
Target Start/End: Original strand, 5544809 - 5544914
Alignment:
Q  415 atttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtca 514  Q
    ||||| ||||| || |||||  ||| ||| ||||||||||||||  ||||||||||| |||| || |||||||||||| |||||| ||||| || |||||    
T  5544809 atttcatcgtcctagtgcgatgttgatttgttcgtcgtctttgtgtgacgttgtttgtctttcttatttcgttcaggtgtttgtttggttcagaatgtca 5544908  T
Q  515 gatcag 520  Q
     |||||    
T  5544909 tatcag 5544914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 514
Target Start/End: Complemental strand, 15128115 - 15128042
Alignment:
Q  441 tttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtca 514  Q
    |||||||||||||||||| ||| |||||||| |||| || |||| |||| |||||||||| |||| ||||||||    
T  15128115 tttattcgtcgtctttgtgcgatgttgtttgtctttcttctttcattcaagtatttgttctgttcagattgtca 15128042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 523
Target Start/End: Original strand, 1944231 - 1944306
Alignment:
Q  448 gtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||| || ||||||||| |||| |||| ||||||||||| ||||| |||||  ||||||| ||||||||    
T  1944231 gtcgtctttgtgcggcgttgtttgtctttcttgtgtcgttcaggtaattgtttggttcaaattgtcatatcagctt 1944306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 904400 - 904478
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||| |||||||||  ||||||||||| |||| |||||| |||||  ||| |||||||||| || ||||||||||||||    
T  904400 ttcgccgtctttgtgtgacgttgtttgtctttcttgttttgttcaactatatgttcggttcagactgtcagatcagctt 904478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 519
Target Start/End: Original strand, 7049381 - 7049451
Alignment:
Q  449 tcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||||||||||  |||||||||||  ||| |||||||  ||||||||||| ||||||| |||||||||||||    
T  7049381 tcgtctttgtgagacgttgtttgtttttcttgtttctctcaggtatttgatcggttcagattgtcagatca 7049451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 520
Target Start/End: Original strand, 33194756 - 33194812
Alignment:
Q  464 gttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    |||||||| |||| || |||| ||| |||||||||||||||| ||||||||||||||    
T  33194756 gttgtttgtctttcttatttccttcgggtatttgttcggttcagattgtcagatcag 33194812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 518
Target Start/End: Original strand, 891742 - 891793
Alignment:
Q  467 gtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatc 518  Q
    ||||| |||| || ||||||||||||||||||||||||  ||||||||||||    
T  891742 gtttgtctttcttatttcgttcaggtatttgttcggtttagattgtcagatc 891793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 520
Target Start/End: Original strand, 31804352 - 31804427
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    ||||||||||| || |||| ||||||| |||| |||||||| ||| ||||||| ||  ||| ||||||||||||||    
T  31804352 ttcgtcgtcttagtgcgacattgtttgtctttcttgtttcgctcaagtatttgctcaattcagattgtcagatcag 31804427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 486
Target Start/End: Complemental strand, 5417213 - 5417139
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgt 486  Q
    |||||||| |||||||  |||||| ||| ||| |||||||||||||| || ||||||||  |||| |||||||||    
T  5417213 gtgatttcgtcgtctttgtgcgacgttggtttgttcgtcgtctttgtgcggcgttgtttctctttcttgtttcgt 5417139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 8633258 - 8633218
Alignment:
Q  358 tatttcccttttattgaaataagtgacttacacatctattt 398  Q
    ||||| |||||||||||||||||||| || |||||||||||    
T  8633258 tattttccttttattgaaataagtgattttcacatctattt 8633218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 365 - 519
Target Start/End: Original strand, 22844104 - 22844258
Alignment:
Q  365 cttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacg 464  Q
    ||||||||||||||| ||| || | ||||||||| ||||        |||||||| |||||||| |||||| ||||||| |||||||||||||| |||||    
T  22844104 cttttattgaaataaatgattttcgcatctattttattttttctttcgtgatttcatcgtcttagtgcgacattgttttgttcgtcgtctttgtgcgacg 22844203  T
Q  465 ttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||    
T  22844204 ttgtttgtctttcttgttttgttcaggtatttgttcggttcagattgtcagatca 22844258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 913387 - 913220
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||| ||||||||||||| || |||||||||||| |||        ||||||||   |||||| |||| | ||||||| |||||||||||    
T  913387 tctatttccctttttttgaaataagtgattttcacatctatttcgtttttgctttcgtgatttcgctgtcttagtgcggcattgttttgttcgtcgtctt 913288  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||||||||||| |||| |||||| |||  |||||||||||||||| |||||||||||||||||    
T  913287 tgtgcgacgttgtttgtctttcttgttttgtttgggtatttgttcggttcagattgtcagatcagctt 913220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 356 - 523
Target Start/End: Original strand, 40797076 - 40797243
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||| ||| || |||||||||||| |||         |||||||  ||||||| || ||| ||||||| |||||||||||    
T  40797076 tctatttcccttttattgaaataaatgattttcacatctatttcgtttttgctttcatgatttcgccgtcttagtgagacattgttttgttcgtcgtctt 40797175  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||||||||||| |||| |||||| |||| |||||||||||| ||| |||||||||||||||||    
T  40797176 tgtgcgacgttgtttgtctttcttgttttgttcgggtatttgttcgattcagattgtcagatcagctt 40797243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 43029730 - 43029893
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  43029730 tttcccttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 43029829  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  ||||||||||| || |||| |||||||||||||||||    
T  43029830 cgacgttgtttgtttttcttgtttctctcaggtatttgatcagttcagattgtcagatcagctt 43029893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 367 - 523
Target Start/End: Complemental strand, 32238056 - 32237900
Alignment:
Q  367 tttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgtt 466  Q
    ||||||||||||||||| || || |||||||||||||        |||||||  || ||||  |||||  ||| ||| |||||||||||||| || ||||    
T  32238056 tttattgaaataagtgattttcatatctatttcattttttattttgtgattttgtcatctttgtgcgatgttggtttgttcgtcgtctttgtgcggcgtt 32237957  T
Q  467 gtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||| |||| | |||||||||||||||||||||||||| |||||||||||||||||    
T  32237956 gtttgtctttctagtttcgttcaggtatttgttcggttcagattgtcagatcagctt 32237900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 364 - 523
Target Start/End: Original strand, 21585950 - 21586109
Alignment:
Q  364 ccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgac 463  Q
    |||||||||||||||||||| || |||||||||||  |||        |||||||| || ||||| || ||| ||| |||||||||||||||| |  |||    
T  21585950 ccttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcatcttagtgtgacgttgatttattcgtcgtctttttttgac 21586049  T
Q  464 gttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
     ||||||| ||||||||||| ||||||||| ||||||||||| |||||||||| ||||||    
T  21586050 tttgtttgtcttttttgttttgttcaggtacttgttcggttcagattgtcagaccagctt 21586109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 445 - 523
Target Start/End: Complemental strand, 29776672 - 29776594
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||  |||||||||||||||||    
T  29776672 ttcgtcgtctttgtacggcgttgtttgtctttcttgtttcgttcaggtatttgttcggttttgattgtcagatcagctt 29776594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 4019694 - 4019808
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgttt---gccttttttgtttcgttcaggtatttgttcggttcgga 508  Q
    |||||||| |||||||| |||||| |||| || |||||||||||||| || ||||||||   | |||| |||||| ||||||||||||||||||||| ||    
T  4019694 gtgatttcgtcgtcttagtgcgacgttgtgttgttcgtcgtctttgtgcggcgttgttttttgtctttattgttttgttcaggtatttgttcggttcaga 4019793  T
Q  509 ttgtcagatcagctt 523  Q
    |||||||||||||||    
T  4019794 ttgtcagatcagctt 4019808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 1165463 - 1165300
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  1165463 tttcccttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 1165364  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    | ||||||||||  ||| |||||||  ||||||||||| || |||| |||||| ||||||||||    
T  1165363 caacgttgtttgtttttcttgtttctctcaggtatttgatcagttcagattgttagatcagctt 1165300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 53426845 - 53427008
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||| |||| |||||||||||||| || ||||||||||||||||        |||||||| |||||||| |||||| || | || |||||| |||||||     
T  53426845 tttctctttcattgaaataagtgattttcacatctatttcattttttcttttgtgatttcgtcgtcttagtgcgacgttttgttgttcgtcatctttgtg 53426944  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
     | | ||||||| |||| |||||| ||||||||||||||||||||  ||||||||||| |||||    
T  53426945 tgcctttgtttgtctttcttgttttgttcaggtatttgttcggtttagattgtcagataagctt 53427008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 366 - 523
Target Start/End: Complemental strand, 32089991 - 32089834
Alignment:
Q  366 ttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgt 465  Q
    |||||||||||||||||| || ||||||||||||||||        |||||||| |||||||| |||||| ||  ||| | ||||||||||||  | | |    
T  32089991 ttttattgaaataagtgattttcacatctatttcattttttattttgtgatttcgtcgtcttagtgcgacattactttgtccgtcgtctttgtggggcat 32089892  T
Q  466 tgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||| |||| |||||||||||| ||||||||| ||||  |||||||| ||||||||    
T  32089891 tgtttgtctttcttgtttcgttcatgtatttgtttggtttagattgtcatatcagctt 32089834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 519
Target Start/End: Complemental strand, 36540743 - 36540582
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || ||||| |||||  |||        |||||||| |||||||| |||||| |||||||  ||||||||||    
T  36540743 tctatttcccttttattgaaataagtgattttcacatttattttgttt-ttctttcgtgatttcgtcgtcttagtgcgacgttgttttgatcgtcgtctt 36540645  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
     ||  || |||||||| |||| ||||||| |||| |||||||| |||||| |||||||||||||    
T  36540644 -gtgggatgttgtttgtctttcttgtttcattcaagtatttgtccggttcagattgtcagatca 36540582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 41882479 - 41882314
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||| ||||||||||||||| || |||||||||||  |||        |||||||| |||||||  |||||| ||| ||  |||||||||||    
T  41882479 tctatttcccttgtattgaaataagtgattt-cacatctattttgttttttattttgtgatttcgtcgtcttcgtgcgacgttggttg-ttcgtcgtctt 41882382  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| |||||||  ||||||||||| ||| ||| |||||||||||||||||    
T  41882381 tgtgcgacgttgtttgtttttcttgtttctctcaggtatttgatcgcttcagattgtcagatcagctt 41882314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 366 - 519
Target Start/End: Original strand, 39340252 - 39340405
Alignment:
Q  366 ttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgt 465  Q
    |||||||||||||||||| || |||||||||| | |||        |||||||   ||||||| |||||| |||||||  ||||||||||||| || |||    
T  39340252 ttttattgaaataagtgattttcacatctattccgttttttctttcgtgattttaccgtcttagtgcgactttgttttgctcgtcgtctttgtgcggcgt 39340351  T
Q  466 tgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    |||||| |||| |||||||||| | ||||||||||||||  |||||||| ||||    
T  39340352 tgtttgtctttcttgtttcgttaatgtatttgttcggtttagattgtcatatca 39340405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 25939494 - 25939383
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| | |||| | |||||| ||||||| || ||||||||||| || ||||||||| |||| ||||||||||||| ||||||||  |||| |||||    
T  25939494 gtgatttcgttgtctcagtgcgacgttgttttgttagtcgtctttgtgcggcgttgtttgtctttgttgtttcgttcagatatttgttatgttcagattg 25939395  T
Q  512 tcagatcagctt 523  Q
    | ||||||||||    
T  25939394 ttagatcagctt 25939383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 519
Target Start/End: Complemental strand, 3088733 - 3088572
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||| |||||||||||||||||||| || |||||||||||| |||        |||||||| |||||||  |||||| ||| ||  |||||||||||    
T  3088733 tctattttccttttattgaaataagtgattt-cacatctatttcgttttttattttgtgatttcgtcgtcttcgtgcgacgttggttg-ttcgtcgtctt 3088636  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||| ||||||||||||  ||| |||||||  ||||||||||  ||| ||| |||||||||||||    
T  3088635 tgtgcgacgttgtttgtttttcttgtttctctcaggtatttaatcgcttcagattgtcagatca 3088572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 518
Target Start/End: Complemental strand, 14741392 - 14741234
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || ||||||||||||||||        |||||||| |||||||  |||||| |||  || ||||||||||||||     
T  14741392 tttcccttttattgaaataagtgattttcacatctatttcattttttattttgtgatttcgtcgtcttcgtgcgacgttg-gttgttcgtcgtctttgtg 14741294  T
Q  460 cgacgttgtttgccttttttg-tttcgttcaggtatttgttcggttcggattgtcagatc 518  Q
    ||||||||||||  ||| ||| ||||  ||||||||||| |  |||| ||||||||||||    
T  14741293 cgacgttgtttgtttttcttgttttctctcaggtatttgattagttcagattgtcagatc 14741234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 28995377 - 28995213
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||        |||||||  |||||||  |||||| |||  || |||||||||||    
T  28995377 tctatttcccttttattgaaataagtgattttcacatctatttcgttt--tattttgtgattttgtcgtcttcgtgcgacgttg-gttgttcgtcgtctt 28995281  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| |||||||  | ||||||||| ||| ||| |||||||| ||||||||    
T  28995280 tgtgcgacgttgtttgtttttcttgtttctcttaggtatttgatcgcttcagattgtcatatcagctt 28995213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 360 - 514
Target Start/End: Complemental strand, 29182675 - 29182521
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || || ||||||||  |||        |||||||| |||||||  || ||| ||| ||| ||||||||||||||     
T  29182675 tttcccttttattgaaataagtgattttcatatctattttgttttttattttgtgatttcgtcgtcttcgtgtgacgttggtttgttcgtcgtctttgtg 29182576  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtca 514  Q
    ||||||||||||  ||| |||||||  ||| ||||||| ||||||| ||||||||    
T  29182575 cgacgttgtttgtttttcttgtttctctcaagtatttgatcggttcagattgtca 29182521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 1220262 - 1220151
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||  |||||||| |||||  ||||||| |||||||||||||| || | ||||||| |||||||||||||||  |||||||||||  ||| | |||    
T  1220262 gtgattttgtcgtcttagtgcgatgttgttttgttcgtcgtctttgtgcggctttgtttgtcttttttgtttcgtttgggtatttgttcatttcaggttg 1220163  T
Q  512 tcagatcagctt 523  Q
    ||| ||||||||    
T  1220162 tcatatcagctt 1220151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 421 - 523
Target Start/End: Original strand, 42106248 - 42106348
Alignment:
Q  421 tcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    |||||||  |||||| ||||||| |||||| ||||||  ||||||| |||| |||| |||||| |||  |||||||||||||||| ||||||||||||||    
T  42106248 tcgtctttgtgcgacgttgttttgttcgtcatctttg--cgacgttatttgtctttcttgttttgtttgggtatttgttcggttcagattgtcagatcag 42106345  T
Q  521 ctt 523  Q
    |||    
T  42106346 ctt 42106348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 54240185 - 54240296
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| |||||||  |||||| ||| ||| |||| ||||||||| ||| ||||||||  ||| |||||||  ||||||||||| ||||||| |||||    
T  54240185 gtgatttcgtcgtcttcgtgcgacgttggtttgttcgacgtctttgtgcgatgttgtttgtttttcttgtttctatcaggtatttgatcggttcagattg 54240284  T
Q  512 tcagatcagctt 523  Q
    | ||||||||||    
T  54240285 tgagatcagctt 54240296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 22893730 - 22893644
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgt 498  Q
    |||||||| || ||||| |||||| ||| ||| |||||| |||||||||| ||||||||| |||| ||||||||||||| |||||||    
T  22893730 gtgatttcgtcttcttagtgcgacgttggtttgttcgtcatctttgtacggcgttgtttgtctttcttgtttcgttcagatatttgt 22893644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 45664353 - 45664431
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||| | ||||| |||||||||||| |||| |||||||  ||||||||||| ||||||| |||||||||||||||||    
T  45664353 ttcgtcatatttgtgcgacgttgtttgtctttcttgtttctctcaggtatttgatcggttcagattgtcagatcagctt 45664431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 50519915 - 50519993
Alignment:
Q  445 ttcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||||||||||| ||||||||||||  ||| |||||||  ||||||||||| ||| ||| |||||||||||||||||    
T  50519915 ttcgtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttgatcgcttcagattgtcagatcagctt 50519993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 470
Target Start/End: Original strand, 42106155 - 42106269
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || ||||| |||||| |||         |||||||  ||||||| |||||| |||||||  ||||||||||    
T  42106155 tctatttcccttttattgaaataagtgattttcacatatatttcgtttttgctttcctgatttcgccgtcttagtgcgacgttgtttttatcgtcgtctt 42106254  T
Q  456 tgtacgacgttgttt 470  Q
    ||| |||||||||||    
T  42106255 tgtgcgacgttgttt 42106269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 364 - 489
Target Start/End: Complemental strand, 25374133 - 25374008
Alignment:
Q  364 ccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgac 463  Q
    |||||| ||||||||||||| || ||||||||||||||||        ||||||||| ||||||| |||||| ||| ||| ||  |||||| ||| ||||    
T  25374133 ccttttcttgaaataagtgattttcacatctatttcattttttattttgtgatttctccgtcttagtgcgactttggtttgtttatcgtctatgtgcgac 25374034  T
Q  464 gttgtttgccttttttgtttcgttca 489  Q
    |||||||  |||| ||||||||||||    
T  25374033 gttgtttttctttcttgtttcgttca 25374008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 523
Target Start/End: Original strand, 40365337 - 40365435
Alignment:
Q  424 tcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||| |||||| ||| ||| || |||||||||||||| |||||||||  ||||| | |||||| |||||||||||| |||  |||||||||||||||||    
T  40365337 tcttaatgcgacgttggtttgtttgtcgtctttgtacggcgttgtttgt-tttttagattcgtttaggtatttgttcagtttagattgtcagatcagctt 40365435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 22286820 - 22286655
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||| |||||||||||||||||| | || |||||||||||| |||        |||||||| |||||||   ||||| ||| ||  |||||||||||    
T  22286820 tctattttccttttattgaaataagtaattt-cacatctatttcgttttttattttgtgatttcgtcgtcttcgcgcgacgttggttg-ttcgtcgtctt 22286723  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||||||||  ||| |||||||  ||||| ||||| ||| |||  ||||||||||||||||    
T  22286722 tgtgcgacgttgtttgtttttcttgtttctctcaggcatttgatcgcttcatattgtcagatcagctt 22286655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 523
Target Start/End: Complemental strand, 7656512 - 7656419
Alignment:
Q  430 tgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||| ||| ||| |||||||||||||| |||  ||||||| |||| |||||||  ||||||||||| ||||||  |||||| ||||||||||    
T  7656512 tgcgacgttggtttgttcgtcgtctttgtgcgatattgtttgtctttcttgtttctctcaggtatttgatcggtttagattgttagatcagctt 7656419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 523
Target Start/End: Original strand, 11846684 - 11846758
Alignment:
Q  448 gtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||| ||||||| ||| | ||| |||||||  ||||||||||| ||||||| |||||||||||||||||    
T  11846684 gtcgtctttgtgcgacgtttttttc-tttcttgtttctctcaggtatttgatcggttcagattgtcagatcagctt 11846758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 520
Target Start/End: Complemental strand, 33977993 - 33977832
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| ||  ||||||||||  |||        |||||||| |||||||  |||||| |||  || |||||||||||    
T  33977993 tctatttcccttttattgaaataagtgatttttacatctattttgttt--tattttgtgatttcatcgtcttcgtgcgacgttg-gttgttcgtcgtctt 33977897  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    ||| ||||||||||||  | | |||||||  ||||||||||| ||| ||| | |||| |||||||    
T  33977896 tgtgcgacgttgtttgtttgtcttgtttctctcaggtatttgatcgcttcagtttgttagatcag 33977832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 40462010 - 40461899
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||  |||||||| |||||  ||| ||| |||||||||||||| || ||||||||| |||| ||||||| | ||  |||||| | ||||| |||||    
T  40462010 gtgattttgtcgtcttagtgcgatgttgatttgttcgtcgtctttgtgcggcgttgtttgtctttcttgtttcatacatatatttgattggttcagattg 40461911  T
Q  512 tcagatcagctt 523  Q
    |||||| |||||    
T  40461910 tcagattagctt 40461899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 520
Target Start/End: Original strand, 50460239 - 50460397
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||| ||||||||||||||||||| || ||||||||||| ||||        |||||||  ||| |||| |||||  ||||||| ||||| ||||||||     
T  50460239 tttctcttttattgaaataagtgattttcacatctattttattt-ttctttcgtgattttgtcgccttagtgcgatgttgttttgttcgttgtctttgtg 50460337  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
        |||||||| |||| || |||||||||| |||||||||||||  ||||||||||||||    
T  50460338 ttt-gttgtttgtctttcttatttcgttcagttatttgttcggtttagattgtcagatcag 50460397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 20201125 - 20200962
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||| ||||||||||||||||||| || |||||||||||  |||         ||||||| |||| ||  |||||| ||| ||| || ||| |||||||     
T  20201125 tttcacttttattgaaataagtgattttcacatctattttgttttttattttatgatttcgtcgttttcgtgcgacattggtttgtttgtcatctttgtg 20201026  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
     || ||||||||  ||| |||||||  |||| |||||| ||||||| |||||||||||||||||    
T  20201025 tgaggttgtttgtttttcttgtttctctcagttatttgatcggttcagattgtcagatcagctt 20200962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 20203307 - 20203144
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||| ||||||||||||||||||| || |||||||||||  |||         ||||||| |||| ||  |||||| ||| ||| || ||| |||||||     
T  20203307 tttcacttttattgaaataagtgattttcacatctattttgttttttattttatgatttcgtcgttttcgtgcgacattggtttgtttgtcatctttgtg 20203208  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
     || ||||||||  ||| |||||||  |||| |||||| ||||||| |||||||||||||||||    
T  20203207 tgaggttgtttgtttttcttgtttctctcagttatttgatcggttcagattgtcagatcagctt 20203144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 481
Target Start/End: Original strand, 33069755 - 33069824
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgt 481  Q
    |||| |||||||||||| ||| || ||||||| || |||| ||||||||||| ||||||| |||||||||    
T  33069755 gtgaattcttcgtcttagtgcaacattgttttgtttgtcgcctttgtacgacattgtttgtcttttttgt 33069824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 504
Target Start/End: Original strand, 2598202 - 2598270
Alignment:
Q  436 cttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggtt 504  Q
    |||||||  ||| |||||||||| | |||||||||  |||| |||||||||||| ||||||||||||||    
T  2598202 cttgtttcgttcatcgtctttgtgcaacgttgtttctctttcttgtttcgttcatgtatttgttcggtt 2598270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 517
Target Start/End: Complemental strand, 48061035 - 48060999
Alignment:
Q  481 tttcgttcaggtatttgttcggttcggattgtcagat 517  Q
    ||||||||||||||||||||||||| |||||||||||    
T  48061035 tttcgttcaggtatttgttcggttcagattgtcagat 48060999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 517
Target Start/End: Original strand, 26412453 - 26412492
Alignment:
Q  478 ttgtttcgttcaggtatttgttcggttcggattgtcagat 517  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  26412453 ttgtttcgttcaagtatttgttcggttcagattgtcagat 26412492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 516
Target Start/End: Original strand, 34767122 - 34767189
Alignment:
Q  449 tcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcaga 516  Q
    ||||||||||  || |||||||| |||| |||||||||||| |||||||||| ||||  |||||||||    
T  34767122 tcgtctttgtgtgatgttgtttgtctttcttgtttcgttcaagtatttgttcagttcaaattgtcaga 34767189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 399
Target Start/End: Complemental strand, 43839585 - 43839546
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttc 399  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  43839585 tttcccttttattgaaataagtgattttcacatctatttc 43839546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 399
Target Start/End: Original strand, 50519833 - 50519875
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttc 399  Q
    |||||||||||||||||||||||||||| || ||||||||||||    
T  50519833 tctatttcccttttattgaaataagtga-tttcacatctatttc 50519875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 12270 - 12107
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||| ||||||| |||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  12270 tttcccttttattgaaataagtgattttcacacctatttcgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 12171  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||||||||  ||| |||||||  ||||||||||| ||||||| |||||||||||||||||    
T  12170 cgacgttgtttgtttttcttgtttctctcaggtatttgatcggttcagattgtcagatcagctt 12107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 366 - 523
Target Start/End: Original strand, 244689 - 244846
Alignment:
Q  366 ttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgt 465  Q
    |||||||||||||||||| || |||||||||||| |||        |||||||  |||||||  |||||||||| ||| |||||||||||||| ||||||    
T  244689 ttttattgaaataagtgattttcacatctatttcgttttttagtttgtgattttgtcgtcttcgtgcgaccttggtttgttcgtcgtctttgtgcgacgt 244788  T
Q  466 tgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||  ||| |||||||  |||||||||||  |||||| |||||||||||||||||    
T  244789 tgtttgtttttcttgtttctctcaggtatttgaccggttcagattgtcagatcagctt 244846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 519
Target Start/End: Complemental strand, 1208 - 1049
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || |||||||||||  |||        |||||||| |||||||| |||||| ||| ||| |||||||| |||||     
T  1208 tttcccttttattgaaataagtgattttcacatctattttgttttttattttgtgatttcgtcgtcttagtgcgacgttggtttgttcgtcgtatttgtg 1109  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    ||| |||| ||| |||| |||| ||||||||||||||||| |||||  ||||||||||||    
T  1108 cgaagttgattgtctttcttgtatcgttcaggtatttgtttggttcaaattgtcagatca 1049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 5597 - 5430
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||| ||||||||||||||||||| || ||||||| ||   |||        |||||||| |||||||  |||||| ||| ||| |||||||||||    
T  5597 tctatttctcttttattgaaataagtgattttcacatctgttatgttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctt 5498  T
Q  456 tgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| |||||||||||| |||| |||||||  ||||||||||| |||||||  ||||||| ||||||||    
T  5497 tgtgcgacgttgtttgtctttcttgtttctctcaggtatttgatcggttcatattgtcatatcagctt 5430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 36576 - 36734
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgta 459  Q
    |||||||||||||||||||||||| || ||||||||||| ||||        |||||||| |||||||  |||||| ||| ||| ||||||||||||||     
T  36576 tttcccttttattgaaataagtgattttcacatctattttattttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 36675  T
Q  460 cgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||||||| |     |||||||||||  ||||||||||| || |||| |||||||||||||||||    
T  36676 cgacgtttt-----ttttttgtttctctcaggtatttgatcagttcagattgtcagatcagctt 36734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 11848 - 11680
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||        |||||||| |||||||| |||||  |||||||    |||| |||    
T  11848 tctatttcccttttattgaaataagtgattttcacatctatttcgttt-ttctttcgtgatttcatcgtcttagtgcgaagttgttttgcctgtcgactt 11750  T
Q  456 tgtacgacgttgtttgcc--ttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    ||| ||||||| |||| |  |||||| ||||||||| ||||||||||  ||| |||||||| ||||||||    
T  11749 tgtgcgacgttatttgtcttttttttttttcgttcatgtatttgttcaattcagattgtcaaatcagctt 11680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 471
Target Start/End: Complemental strand, 137129 - 137014
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttcatttcnnnnnnngtgatttcttcgtcttattgcgaccttgttttattcgtcgtctt 455  Q
    ||||||||||||||| |||||||||||| ||  ||||||||||| |||        |||||||| |||||||| | |||| ||||||| ||| |||||||    
T  137129 tctatttcccttttaatgaaataagtgattttaacatctatttcgttttttcttttgtgatttcgtcgtcttagtacgacgttgttttgttcatcgtctt 137030  T
Q  456 tgtacgacgttgtttg 471  Q
    ||| ||||||||||||    
T  137029 tgtgcgacgttgtttg 137014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 340
Target Start/End: Complemental strand, 448150 - 448051
Alignment:
Q  241 tagattagtagtaaaattgattttcagccaatataattcacagttgcacatac-ttggtaccttaaatactattacacatgtttataaagtcatattaat 339  Q
    ||||||||||||||||||||||| | ||||||||| |||| | ||| |||||| |||||||| ||  ||||||||||||  ||| |||||||||| ||||    
T  448150 tagattagtagtaaaattgatttcccgccaatatagttcagaattgtacatactttggtacc-taggtactattacacacatttgtaaagtcatactaat 448052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 523
Target Start/End: Complemental strand, 10315 - 10215
Alignment:
Q  423 gtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagct 522  Q
    |||||| |||||| ||| ||| |||||||||||||| |   |||||||| |||| |||||||||  ||||||||||| || ||  |||||||||| ||||    
T  10315 gtcttagtgcgacgttggtttgttcgtcgtctttgtgcattgttgtttgtctttcttgtttcgtctaggtatttgtttggatcaaattgtcagattagct 10216  T
Q  523 t 523  Q
    |    
T  10215 t 10215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 520
Target Start/End: Complemental strand, 91386 - 91310
Alignment:
Q  444 attcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcag 520  Q
    ||||||||||||||||||||||||| || |||| || ||| |||  | ||||||||||||||  ||||||| |||||    
T  91386 attcgtcgtctttgtacgacgttgtatgtctttctttttttgttatgatatttgttcggttcaaattgtcaaatcag 91310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 399
Target Start/End: Original strand, 827 - 866
Alignment:
Q  360 tttcccttttattgaaataagtgacttacacatctatttc 399  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  827 tttcccttttattgaaataagtggctttcacatctatttc 866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 1142 - 1031
Alignment:
Q  412 gtgatttcttcgtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattg 511  Q
    |||||||| || ||||  || ||| ||| ||| ||||| |||||| | |||  |||||||  ||| |||||||  ||||||||||| ||||||| |||||    
T  1142 gtgatttcgtcatcttcgtgtgacgttggtttgttcgttgtctttttgcgaaattgtttgtttttcttgtttctctcaggtatttgatcggttcagattg 1043  T
Q  512 tcagatcagctt 523  Q
    ||||||||||||    
T  1042 tcagatcagctt 1031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 399
Target Start/End: Complemental strand, 9719 - 9676
Alignment:
Q  356 tctatttcccttttattgaaataagtgacttacacatctatttc 399  Q
    |||||||||||||||||||| ||||||| || ||||||||||||    
T  9719 tctatttcccttttattgaattaagtgattttcacatctatttc 9676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 519
Target Start/End: Complemental strand, 6789 - 6695
Alignment:
Q  423 gtcttattgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatca 519  Q
    |||||| ||| || ||| ||| |||||||||| ||  || |||| |||| |||| |||||||||||||| ||||| ||||||  |||||||||||||    
T  6789 gtcttagtgcaacgttggtttgttcgtcgtctgtg--cggcgttatttgtctttcttgtttcgttcaggcatttgatcggtttagattgtcagatca 6695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 523
Target Start/End: Original strand, 11131 - 11224
Alignment:
Q  430 tgcgaccttgttttattcgtcgtctttgtacgacgttgtttgccttttttgtttcgttcaggtatttgttcggttcggattgtcagatcagctt 523  Q
    |||||| ||| ||| |||| ||||||| | ||||||||||||  ||| |||||||  ||||||||||| ||| ||  |||||||| ||||||||    
T  11131 tgcgacgttggtttgttcgccgtctttatgcgacgttgtttgtttttcttgtttctctcaggtatttgatcgatttagattgtcaaatcagctt 11224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University