View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_33 (Length: 262)
Name: NF17496_low_33
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 9233750 - 9233860
Alignment:
| Q |
19 |
acaacagtgcccgaaacaacaccggaggtgatcaagacagaggaaacaattccagaacaaccagcgatcgaagttcctgctccagaacaaccggaagctg |
118 |
Q |
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| T |
9233750 |
acaacagtgcccgaaacaacaccggaggtgatcaagacagaggaaacaattccagaacaaacagcgatcgaagttcctgctccagaacaaccggaagctg |
9233849 |
T |
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| Q |
119 |
aagttcctgcc |
129 |
Q |
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| T |
9233850 |
aagttcctgcc |
9233860 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 9233917 - 9233975
Alignment:
| Q |
186 |
tccagctgctgtagaaacacaagatccagttgaagttgagaccaaggaagtggtaacag |
244 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9233917 |
tccagctgccgtagaaacacaagatccagttgaagttgagaccaaggaagtggtaacag |
9233975 |
T |
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