View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_34 (Length: 256)
Name: NF17496_low_34
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 23258522 - 23258699
Alignment:
| Q |
61 |
cacttggctcaaaatgaacaaggttattaaaatatcctctttctattttattttatttta--aggcatgttatcaaaatatctattgctgcgtcactata |
158 |
Q |
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| T |
23258522 |
cacttggctcaaaatgaacaaggttatcaaaatatcctctttctattttattttattttataaggcatgttatgaaaatatctac-gctgcgtcactata |
23258620 |
T |
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| Q |
159 |
caaggttattatatgattcagaggaatttactctttttggctctccatccctttcaaacccacatgttattgattgcgc |
237 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23258621 |
caaggttattatatgattcagaggaatttactatttttggctctccatccctttcaaacccacatgttactgattgcgc |
23258699 |
T |
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