View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_37 (Length: 251)
Name: NF17496_low_37
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_37 |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 21837312 - 21837541
Alignment:
| Q |
18 |
atattgaaacttgaaaccagatgggtaatttcgtggtcttctaaaggatttttgactcacaattcataagaaattatggtggattctagagtgagggtcc |
117 |
Q |
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| T |
21837312 |
atattgaaacttgaaaccagatgggtaatttcgtggtcttctaaacgatttttgactcacaattcataagaaattatggtggattctagggtgagggtcc |
21837411 |
T |
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| Q |
118 |
aactaagttcttcacagatataccactaattttaacctttagattaaatagacccacactatttaattattcatcaccgcaccggatctttgcacgttgc |
217 |
Q |
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| T |
21837412 |
aactaagtccctcaccggtttaccactaattttaacctttagattaaatagacccacacgatttaattattcatcaccgcactggatctttgcacgttgc |
21837511 |
T |
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| Q |
218 |
atctgcactctaccaaatttcttctctctc |
247 |
Q |
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| T |
21837512 |
atctgcactctaccaaatttcttctctctc |
21837541 |
T |
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Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 97 - 247
Target Start/End: Original strand, 22297016 - 22297166
Alignment:
| Q |
97 |
tggattctagagtgagggtccaactaagttcttcacagatataccactaattttaacctttagattaaatagacccacactatttaattattcatcaccg |
196 |
Q |
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| T |
22297016 |
tggattctagggtgagagtccaactaagtccctcaccgatgtaccactaattttaacctttagattaaatagacccacacgatttaattattcatcaccg |
22297115 |
T |
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| Q |
197 |
caccggatctttgcacgttgcatctgcactctaccaaatttcttctctctc |
247 |
Q |
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| T |
22297116 |
cactggatctttgcacgttgcatctgcactctaccagatttcttctctctc |
22297166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 34595981 - 34595907
Alignment:
| Q |
96 |
gtggattctagagtgagggtccaactaagttcttcacagatataccactaattttaacctttagattaaatagac |
170 |
Q |
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| T |
34595981 |
gtggattctagagtgagggttcaactaaatccctcaccggtgtaccactaattttgacctttaaattaaaaagac |
34595907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 29594906 - 29594955
Alignment:
| Q |
95 |
ggtggattctagagtgagggtccaactaagttcttcacagatataccact |
144 |
Q |
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| T |
29594906 |
ggtggattctagggtgagggttcaattaagttcttcaccgatgtaccact |
29594955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 23257317 - 23257349
Alignment:
| Q |
93 |
atggtggattctagagtgagggtccaactaagt |
125 |
Q |
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| T |
23257317 |
atggtggattctagagtgagggtccaattaagt |
23257349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 27345968 - 27345912
Alignment:
| Q |
94 |
tggtggattctagagtgagggtccaactaagttcttcacagatataccactaatttt |
150 |
Q |
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| T |
27345968 |
tggtggattctagggtgagggttcaattaagtccctcaccgatataccacttatttt |
27345912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 9343 - 9379
Alignment:
| Q |
89 |
aattatggtggattctagagtgagggtccaactaagt |
125 |
Q |
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| T |
9343 |
aattatggtggattctagagtgaaggtccaaccaagt |
9379 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 13084927 - 13084847
Alignment:
| Q |
95 |
ggtggattctagagtgagggtccaactaagttcttcacagatataccactaattttaacctttagattaaatagacccaca |
175 |
Q |
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| T |
13084927 |
ggtgaattctagggtgagggttcaactaagtctctcaccggtgtaccactaactttgacctttagattaaaaagactcaca |
13084847 |
T |
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