View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17496_low_39 (Length: 249)

Name: NF17496_low_39
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17496_low_39
NF17496_low_39
[»] chr7 (1 HSPs)
chr7 (1-239)||(12861327-12861565)
[»] chr8 (8 HSPs)
chr8 (23-190)||(9506061-9506228)
chr8 (23-189)||(290996-291162)
chr8 (127-169)||(267916-267958)
chr8 (127-169)||(647963-648005)
chr8 (127-169)||(833698-833740)
chr8 (22-75)||(267811-267864)
chr8 (22-75)||(648057-648110)
chr8 (22-75)||(833792-833845)
[»] chr3 (3 HSPs)
chr3 (23-177)||(2293607-2293761)
chr3 (23-168)||(17779062-17779213)
chr3 (23-168)||(19080363-19080514)
[»] chr2 (3 HSPs)
chr2 (23-187)||(29560008-29560172)
chr2 (23-168)||(19387490-19387635)
chr2 (131-168)||(18598813-18598850)
[»] chr6 (3 HSPs)
chr6 (23-177)||(19822586-19822740)
chr6 (23-96)||(19887676-19887749)
chr6 (127-177)||(19887780-19887830)
[»] chr1 (4 HSPs)
chr1 (131-169)||(18213884-18213922)
chr1 (137-169)||(165698-165730)
chr1 (134-169)||(140304-140339)
chr1 (14-93)||(140380-140459)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 12861565 - 12861327
Alignment:
Q  1 tggaagagaagtcaaagatgcaagcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaaggacttctgtatacaaagtatgcggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12861565 tggaagagaagtcaaagatgcaagcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaaggacttctgtatacaaagtatgcggt 12861466  T
Q  101 ggtgatggtagatgcagtagtgaggatattttagctgcatttgatgatgccattgctgatggagttgatattatcacaatatctattggggcacaacaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12861465 ggtgatggtagatgcagtagtgaggatattttagctgcatttgatgatgccattgctgatggagttgatattatcacaatatctattggggcacaacaag 12861366  T
Q  201 tctctgaatttttccaagatcctattgccattggttcat 239  Q
    ||| ||||||||||||||||||| |||||||||||||||    
T  12861365 tctttgaatttttccaagatcctcttgccattggttcat 12861327  T

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Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 9506061 - 9506228
Alignment:
Q  23 agcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaaggacttctgtatacaaagtatgcggtggtgatggtagatgcagtagtg 122  Q
    |||||||||||||||||  ||||||| |||||||| ||||| || |||||||||| | |||||||||||||||||      |||||||  |||| | |      
T  9506061 agcttttatggtcttgcaaaaggcaccgcaagaggtggagtcccatcttcaaggattgctgtatacaaagtatgcaacacagatggtacttgcaatggaa 9506160  T
Q  123 aggatattttagctgcatttgatgatgccattgctgatggagttgatattatcacaatatctattggg 190  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  9506161 atgatattttagctgcatttgatgatgccattgctgatggagttgacattatcacaatctcaattggg 9506228  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 290996 - 291162
Alignment:
Q  23 agcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaaggacttctgtatacaaagtatgcggtggtgatggtagatgcagtagtg 122  Q
    |||||||||| ||||||  ||||||| |||||||| |||||||| ||||||| || |  |||||||||||||||||     |||||||  |||||  |      
T  290996 agcttttatgatcttgcaaaaggcaccgcaagaggtggagttccgtcttcaaagattgttgtatacaaagtatgcgacaaagatggtaactgcagcggaa 291095  T
Q  123 aggatattttagctgcatttgatgatgccattgctgatggagttgatattatcacaatatctattgg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  291096 aggatattttagctgcatttgatgatgccattgctgatggagttgacattatcacaatctcaattgg 291162  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 267916 - 267958
Alignment:
Q  127 tattttagctgcatttgatgatgccattgctgatggagttgat 169  Q
    ||||||| ||||||| |||||||||||||||||||||||||||    
T  267916 tattttatctgcattcgatgatgccattgctgatggagttgat 267958  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 648005 - 647963
Alignment:
Q  127 tattttagctgcatttgatgatgccattgctgatggagttgat 169  Q
    ||||||| ||||||| |||||||||||||||||||||||||||    
T  648005 tattttatctgcattcgatgatgccattgctgatggagttgat 647963  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 833740 - 833698
Alignment:
Q  127 tattttagctgcatttgatgatgccattgctgatggagttgat 169  Q
    ||||||| ||||||| |||||||||||||||||||||||||||    
T  833740 tattttatctgcattcgatgatgccattgctgatggagttgat 833698  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 267811 - 267864
Alignment:
Q  22 aagcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaag 75  Q
    ||||||||||||||||||  |||||||||||||||| ||||  || ||||||||    
T  267811 aagcttttatggtcttgcaaaaggcactgcaagaggtggagcaccatcttcaag 267864  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 648110 - 648057
Alignment:
Q  22 aagcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaag 75  Q
    ||||||||||||||||||  |||||||||||||||| ||||  || ||||||||    
T  648110 aagcttttatggtcttgcaaaaggcactgcaagaggtggagcaccatcttcaag 648057  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 833845 - 833792
Alignment:
Q  22 aagcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaag 75  Q
    ||||||||||||||||||  |||||||||||||||| ||||  || ||||||||    
T  833845 aagcttttatggtcttgcaaaaggcactgcaagaggtggagcaccatcttcaag 833792  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 2293607 - 2293761
Alignment:
Q  23 agcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaaggacttctgtatacaaagtatgcggtggtgatggtagatgcagtagtg 122  Q
    ||||||| ||||||||| ||||| ||||||||||| | |||||| |||||||||| | |||||||||||||||||      | ||||| ||||||| |||    
T  2293607 agcttttttggtcttgcagaaggaactgcaagaggtgcagttccatcttcaaggattgctgtatacaaagtatgcatcttaggtggtatatgcagtggtg 2293706  T
Q  123 aggatattttagctgcatttgatgatgccattgctgatggagttgatattatcac 177  Q
    |    |||||||||||||||||||||||||||||||||||||||||  |||||||    
T  2293707 atctaattttagctgcatttgatgatgccattgctgatggagttgacgttatcac 2293761  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 17779213 - 17779062
Alignment:
Q  23 agcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaaggacttctgtatacaaagtatgcggtggt---gat---ggtagatgca 116  Q
    |||||||||||| ||||  |||||||||||||||| |||||||| |||||||||| | ||| ||||||| ||||||| | |   |||   ||||||||||    
T  17779213 agcttttatggttttgcaaaaggcactgcaagaggtggagttccatcttcaaggattgctgcatacaaaatatgcggcgatatagataacggtagatgca 17779114  T
Q  117 gtagtgaggatattttagctgcatttgatgatgccattgctgatggagttga 168  Q
    || |||| | ||||||||| |||||||||||||| ||| |||||||||||||    
T  17779113 gtggtgatgctattttagcggcatttgatgatgcaatttctgatggagttga 17779062  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 19080514 - 19080363
Alignment:
Q  23 agcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaaggacttctgtatacaaagtatgcggtggt---gat---ggtagatgca 116  Q
    |||||||||||| ||||  |||||||||||||||| |||||||| |||||||||| | ||| ||||||| ||||||| | |   |||   ||||||||||    
T  19080514 agcttttatggttttgcaaaaggcactgcaagaggtggagttccatcttcaaggattgctgcatacaaaatatgcggcgatatagataacggtagatgca 19080415  T
Q  117 gtagtgaggatattttagctgcatttgatgatgccattgctgatggagttga 168  Q
    || |||| | ||||||||| |||||||||||||| ||| |||||||||||||    
T  19080414 gtggtgatgctattttagcggcatttgatgatgcaatttctgatggagttga 19080363  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 29560008 - 29560172
Alignment:
Q  23 agcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaaggacttctgtatacaaagtatgcggtggtgatggtagatgcagtagtg 122  Q
    |||||||||||||||||| |||||||||||||||| ||||| || |||||||||| | ||  ||||||| | ||  | ||  |  ||| ||||||| |||    
T  29560008 agcttttatggtcttgctaaaggcactgcaagaggtggagtcccatcttcaaggattgctacatacaaaatttgtcgcggcaacagtacatgcagtggtg 29560107  T
Q  123 aggatattttagctgcatttgatgatgccattgctgatggagttgatattatcacaatatctatt 187  Q
    | | ||||||||| |||||||||||||| ||||||||||||||||| || ||||| || ||||||    
T  29560108 atgttattttagcagcatttgatgatgcaattgctgatggagttgacatcatcactatctctatt 29560172  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 19387490 - 19387635
Alignment:
Q  23 agcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaaggacttctgtatacaaagtatgcggtggtgatggtagatgcagtagtg 122  Q
    |||||||||||||||||  | || | ||||||||| ||| | || |||||||||| | ||| |||||||   |||  || |  ||||| ||||| || ||    
T  19387490 agcttttatggtcttgcgaatggaattgcaagaggtggaatcccatcttcaaggattactgcatacaaaagttgcaatgattttggtacatgcactaatg 19387589  T
Q  123 aggatattttagctgcatttgatgatgccattgctgatggagttga 168  Q
    | | ||| ||||||||||||||||||||||||||||||||||||||    
T  19387590 atgctatattagctgcatttgatgatgccattgctgatggagttga 19387635  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 18598813 - 18598850
Alignment:
Q  131 ttagctgcatttgatgatgccattgctgatggagttga 168  Q
    |||||||||||||||||||||||||| |||||||||||    
T  18598813 ttagctgcatttgatgatgccattgccgatggagttga 18598850  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 19822586 - 19822740
Alignment:
Q  23 agcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaaggacttctgtatacaaagtatgcggtggtgatggtagatgcagtagtg 122  Q
    |||||||||||||||||  |||||||||||||||| ||||| || |||||||| | | ||||||||||||||||         |  || |||||||  ||    
T  19822586 agcttttatggtcttgcaaaaggcactgcaagaggtggagtcccatcttcaagaattgctgtatacaaagtatgtatatcaagtcttaaatgcagttctg 19822685  T
Q  123 aggatattttagctgcatttgatgatgccattgctgatggagttgatattatcac 177  Q
    |   ||| |||||||||||||||||||||||||||||||||||||| || |||||    
T  19822686 actctatattagctgcatttgatgatgccattgctgatggagttgacatcatcac 19822740  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 19887676 - 19887749
Alignment:
Q  23 agcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaaggacttctgtatacaaagtatg 96  Q
    |||||||||||||||||  |||||||||||||||| ||||| || |||||||| | | ||||||||||||||||    
T  19887676 agcttttatggtcttgcaaaaggcactgcaagaggtggagtcccatcttcaagaattgctgtatacaaagtatg 19887749  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 19887780 - 19887830
Alignment:
Q  127 tattttagctgcatttgatgatgccattgctgatggagttgatattatcac 177  Q
    ||| |||||||||||||||||||||||||||||||||||||| || |||||    
T  19887780 tatattagctgcatttgatgatgccattgctgatggagttgacatcatcac 19887830  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 18213884 - 18213922
Alignment:
Q  131 ttagctgcatttgatgatgccattgctgatggagttgat 169  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  18213884 ttagcagcatttgatgatgccattgctgatggagttgat 18213922  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 165730 - 165698
Alignment:
Q  137 gcatttgatgatgccattgctgatggagttgat 169  Q
    |||||||||||||||||||||||||||||||||    
T  165730 gcatttgatgatgccattgctgatggagttgat 165698  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 140339 - 140304
Alignment:
Q  134 gctgcatttgatgatgccattgctgatggagttgat 169  Q
    |||||||||||||||||||||| |||||||||||||    
T  140339 gctgcatttgatgatgccattgatgatggagttgat 140304  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 140459 - 140380
Alignment:
Q  14 aaagatgcaagcttttatggtcttgctgaaggcactgcaagaggaggagttccttcttcaaggacttctgtatacaaagt 93  Q
    |||| ||| ||||||||||||  |||  |||||| ||||||||| |||||||| |||||||||| | ||| |||||||||    
T  140459 aaaggtgcgagcttttatggttatgcaaaaggcattgcaagaggtggagttccatcttcaaggattgctgcatacaaagt 140380  T

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