View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_40 (Length: 242)
Name: NF17496_low_40
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 29433199 - 29432963
Alignment:
| Q |
1 |
gcttcaccaaaataaacagtttcgccacgagcgagcaagaaaaggtcgtcaaaaagtgcaaatacttcactattgggctgatgaattgaagaaataacag |
100 |
Q |
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| T |
29433199 |
gcttcaccaaaataaacagtttcgccacgagcgagcaagaaaaggtcgtcaaaaagtgcaaatacttcactattgggctgatgaattgaagaaataacag |
29433100 |
T |
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| Q |
101 |
tccttccatcatgagcaatatttctgagagtttgaacaacaaaaaatgcagaagcactatctaagccacaagttggttcatcaagaaacaacaaacgagg |
200 |
Q |
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| T |
29433099 |
tccttccatcatgagcaatatttctgagagtttgaacaacaaaaaatgcagaagcactatctaagccacaagttggttcatcaagaaacaacaaacgagg |
29433000 |
T |
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| Q |
201 |
ctttgtgagaatctcaagtgcaatgctagttcttttc |
237 |
Q |
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| T |
29432999 |
ctttgtgagaatctcaagtgcaatgctagttcttttc |
29432963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 29466030 - 29465794
Alignment:
| Q |
1 |
gcttcaccaaaataaacagtttcgccacgagcgagcaagaaaaggtcgtcaaaaagtgcaaatacttcactattgggctgatgaattgaagaaataacag |
100 |
Q |
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| T |
29466030 |
gcttcaccaaaataaacagtttcaccaccagagagcaagaaaagatcatcaaaaagtgcaaagacttcactgctaggctgatgaatagaagaaataacag |
29465931 |
T |
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| Q |
101 |
tccttccatcatgagcaatatttctgagagtttgaacaacaaaaaatgcagaagcactatctaagccacaagttggttcatcaagaaacaacaaacgagg |
200 |
Q |
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| T |
29465930 |
tccttccatcacgagcaacatttctaagagtttggacaacaaaaaatgcagaagcactgtccaaaccactagtcggttcatcaagaaacagcaaccgagg |
29465831 |
T |
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| Q |
201 |
ctttgtgagaatctcaagtgcaatgctagttcttttc |
237 |
Q |
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| T |
29465830 |
ccttgtgagaatctcaagtgcaatgctagttcttttc |
29465794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 29480194 - 29480014
Alignment:
| Q |
57 |
tgcaaatacttcactattgggctgatgaattgaagaaataacagtccttccatcatgagcaatatttctgagagtttgaacaacaaaaaatgcagaagca |
156 |
Q |
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|||||| || |||||| | || ||||||||||||||||||||||| | |||||||||||||| ||||| | ||||||| |||||||| |||| || ||| |
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| T |
29480194 |
tgcaaaaacctcactacttggttgatgaattgaagaaataacagttttcccatcatgagcaatgtttctcaaagtttgagcaacaaaatatgctgaggca |
29480095 |
T |
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| Q |
157 |
ctatctaagccacaagttggttcatcaagaaacaacaaacgaggctttgtgagaatctcaagtgcaatgctagttcttttc |
237 |
Q |
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| T |
29480094 |
ctgtccaaaccacttgttggctcatcaaggaacaagagacatggcctagtaagaatttcaagtgctatgctagttcttttc |
29480014 |
T |
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