View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_41 (Length: 240)
Name: NF17496_low_41
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_41 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 12861860 - 12861641
Alignment:
| Q |
20 |
ggtgatgggtatctttggacatttagcaatattaatgtttatagtgtaggnnnnnnnnntgcaataccattagtaaattgtagtaagtatgtatattgag |
119 |
Q |
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| T |
12861860 |
ggtgatgggtatctttggacatttagcaatattaatgtttatagtgtaggaaaaaaaa-tgcaataccattagtaaattttagtaagtatgtatattgag |
12861762 |
T |
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| Q |
120 |
tttattagtttgttaaagtgatttattttttatgatcagatcttggtcctattccnnnnnnntggaggggagtttgtgcaggtggtggtaatttcagttg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12861761 |
tttattagtttgttaaagtgatttattttttatgatcagatcttggtcctattccaaaaaaatggaggggagtttgtgcaggtggtggtaatttcagttg |
12861662 |
T |
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| Q |
220 |
caacaagaagattattggagc |
240 |
Q |
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| T |
12861661 |
caacaagaagatcattggagc |
12861641 |
T |
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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 240
Target Start/End: Original strand, 29559790 - 29559910
Alignment:
| Q |
121 |
ttattagtttgttaaagtgatttattttttatg-atcagatcttggtcctattccnnnnnnntggaggggagtttgtgcaggtggtggtaatttcagttg |
219 |
Q |
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| T |
29559790 |
ttattagtttgttaatttgattatttttttatctattaggtcttggtcctattccaaagaagtggaggggagtttgtgcagggggtggtaatttcagttg |
29559889 |
T |
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| Q |
220 |
caacaagaagattattggagc |
240 |
Q |
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|||||| ||||| |||||||| |
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| T |
29559890 |
caacaacaagatcattggagc |
29559910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 18598549 - 18598607
Alignment:
| Q |
182 |
tggaggggagtttgtgcaggtggtggtaatttcagttgcaacaagaagattattggagc |
240 |
Q |
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|||| |||||||||||| |||||||||||||| ||||||||||||||||| || ||||| |
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| T |
18598549 |
tggaagggagtttgtgctggtggtggtaattttagttgcaacaagaagatcatcggagc |
18598607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 18604203 - 18604252
Alignment:
| Q |
182 |
tggaggggagtttgtgcaggtggtggtaatttcagttgcaacaagaagat |
231 |
Q |
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| T |
18604203 |
tggaggggagtttgtgttggtggtggtaattttagttgcaacaagaagat |
18604252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 19387334 - 19387392
Alignment:
| Q |
182 |
tggaggggagtttgtgcaggtggtggtaatttcagttgcaacaagaagattattggagc |
240 |
Q |
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|||||||| ||||||| ||||||| |||||||||||||||||||||||| || ||||| |
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| T |
19387334 |
tggaggggggtttgtgatggtggtgttaatttcagttgcaacaagaagatcatcggagc |
19387392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 9505908 - 9505966
Alignment:
| Q |
182 |
tggaggggagtttgtgcaggtggtggtaatttcagttgcaacaagaagattattggagc |
240 |
Q |
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|||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| |
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| T |
9505908 |
tggaggggagtttgtgcaggcggtgctaatttcacttgcaacaagaagattattggagc |
9505966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 290843 - 290901
Alignment:
| Q |
182 |
tggaggggagtttgtgcaggtggtggtaatttcagttgcaacaagaagattattggagc |
240 |
Q |
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||||||||||||||||| || |||||||| |||| |||||||||||||||||||||||| |
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| T |
290843 |
tggaggggagtttgtgccggcggtggtaacttcacttgcaacaagaagattattggagc |
290901 |
T |
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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 17779430 - 17779311
Alignment:
| Q |
123 |
attagtttgttaaagtgatt-tattttttat-gatcagatcttggtcctattccnnnnnnntggaggggagtttgtgcaggtggtggtaatttcagttgc |
220 |
Q |
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| T |
17779430 |
attagtttgttaatttgattattttttttatcgattaggtcttggtcctattccaaagaagtggaggggagtttgtgcagggggtggtaattttagttgc |
17779331 |
T |
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| Q |
221 |
aacaagaagattattggagc |
240 |
Q |
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||||| ||||| |||||||| |
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| T |
17779330 |
aacaacaagatcattggagc |
17779311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 19080731 - 19080612
Alignment:
| Q |
123 |
attagtttgttaaagtgatt-tattttttat-gatcagatcttggtcctattccnnnnnnntggaggggagtttgtgcaggtggtggtaatttcagttgc |
220 |
Q |
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| T |
19080731 |
attagtttgttaatttgattattttttttatcgattaggtcttggtcctattccaaagaagtggaggggagtttgtgcagggggtggtaattttagttgc |
19080632 |
T |
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| Q |
221 |
aacaagaagattattggagc |
240 |
Q |
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||||| ||||| |||||||| |
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| T |
19080631 |
aacaacaagatcattggagc |
19080612 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 19887490 - 19887569
Alignment:
| Q |
152 |
tgatcagatcttggtcctattccnnnnnnntggaggggagtttgtgcaggtggtggtaatttcagttgcaacaagaagat |
231 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| ||||| |
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| T |
19887490 |
tgatcaggtcttggtcctattccaaaaaagtggaggggagtttgtgcaggcggcactaatttcagttgcaacaacaagat |
19887569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 19822400 - 19822479
Alignment:
| Q |
152 |
tgatcagatcttggtcctattccnnnnnnntggaggggagtttgtgcaggtggtggtaatttcagttgcaacaagaagat |
231 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||| || |||||| ||||||||||| ||||| |
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| T |
19822400 |
tgatcaggtcttggtcctattccaaaaaagtggaggggagtttgtgcaggaggcactaattttagttgcaacaacaagat |
19822479 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 140606 - 140548
Alignment:
| Q |
182 |
tggaggggagtttgtgcaggtggtggtaatttcagttgcaacaagaagattattggagc |
240 |
Q |
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|||||||||||||||||||||||| || | |||| ||| ||||||||||| || ||||| |
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| T |
140606 |
tggaggggagtttgtgcaggtggtagtgacttcaattgtaacaagaagatcatcggagc |
140548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 166000 - 165942
Alignment:
| Q |
182 |
tggaggggagtttgtgcaggtggtggtaatttcagttgcaacaagaagattattggagc |
240 |
Q |
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|||||||||||||||||||||||| || | |||| ||| || |||||||| |||||||| |
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| T |
166000 |
tggaggggagtttgtgcaggtggtagtgacttcaattgtaataagaagatcattggagc |
165942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 18213626 - 18213684
Alignment:
| Q |
182 |
tggaggggagtttgtgcaggtggtggtaatttcagttgcaacaagaagattattggagc |
240 |
Q |
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|||||||||||||||||||||||| || | |||| ||| ||||||||||| || ||||| |
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| T |
18213626 |
tggaggggagtttgtgcaggtggtagtgacttcaattgtaacaagaagatcatcggagc |
18213684 |
T |
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