View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17496_low_42 (Length: 239)

Name: NF17496_low_42
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17496_low_42
NF17496_low_42
[»] chr5 (10 HSPs)
chr5 (55-130)||(7856751-7856826)
chr5 (159-206)||(7856815-7856862)
chr5 (16-53)||(35785197-35785234)
chr5 (16-52)||(40145406-40145442)
chr5 (16-56)||(41470481-41470521)
chr5 (16-50)||(36875668-36875702)
chr5 (16-52)||(14831813-14831849)
chr5 (16-48)||(18520949-18520981)
chr5 (16-52)||(33149703-33149739)
chr5 (16-52)||(42414367-42414403)
[»] chr4 (9 HSPs)
chr4 (16-52)||(3481653-3481689)
chr4 (16-54)||(11511527-11511565)
chr4 (16-53)||(6034042-6034079)
chr4 (16-53)||(50526236-50526273)
chr4 (16-60)||(29234310-29234354)
chr4 (16-51)||(29239886-29239921)
chr4 (16-51)||(41236347-41236382)
chr4 (16-51)||(42044432-42044467)
chr4 (16-54)||(54473598-54473636)
[»] chr3 (7 HSPs)
chr3 (16-51)||(17470405-17470440)
chr3 (16-52)||(53982010-53982046)
chr3 (16-51)||(11095418-11095453)
chr3 (16-51)||(27714956-27714991)
chr3 (16-51)||(49607414-49607449)
chr3 (16-51)||(54868960-54868995)
chr3 (16-53)||(33644198-33644235)
[»] chr2 (12 HSPs)
chr2 (16-54)||(40701475-40701513)
chr2 (16-52)||(28381720-28381756)
chr2 (16-51)||(9058480-9058515)
chr2 (16-51)||(30915463-30915498)
chr2 (16-51)||(33436165-33436200)
chr2 (16-58)||(17820069-17820111)
chr2 (17-51)||(38882879-38882913)
chr2 (16-53)||(4060683-4060720)
chr2 (16-52)||(13438342-13438378)
chr2 (16-48)||(19930885-19930917)
chr2 (16-52)||(27864703-27864739)
chr2 (16-48)||(28863458-28863490)
[»] chr1 (13 HSPs)
chr1 (16-58)||(44548441-44548483)
chr1 (16-54)||(48716347-48716385)
chr1 (16-61)||(51898748-51898794)
chr1 (16-53)||(9474941-9474978)
chr1 (16-52)||(37649197-37649233)
chr1 (16-51)||(2581915-2581950)
chr1 (16-51)||(8346453-8346488)
chr1 (16-51)||(38595154-38595189)
chr1 (16-51)||(38632386-38632421)
chr1 (16-52)||(27564800-27564836)
chr1 (16-52)||(47452385-47452421)
chr1 (16-56)||(50591065-50591105)
chr1 (16-56)||(50630453-50630493)
[»] scaffold1268 (1 HSPs)
scaffold1268 (16-52)||(994-1030)
[»] scaffold1267 (1 HSPs)
scaffold1267 (16-52)||(994-1030)
[»] chr8 (8 HSPs)
chr8 (16-52)||(504186-504222)
chr8 (16-51)||(37038479-37038514)
chr8 (16-50)||(9122196-9122230)
chr8 (16-54)||(40424008-40424046)
chr8 (16-52)||(15197332-15197368)
chr8 (16-52)||(20074999-20075035)
chr8 (16-52)||(23122662-23122698)
chr8 (16-52)||(34012361-34012397)
[»] chr6 (6 HSPs)
chr6 (16-52)||(17598553-17598589)
chr6 (16-51)||(6209530-6209565)
chr6 (16-51)||(29857827-29857862)
chr6 (17-51)||(15832577-15832611)
chr6 (16-48)||(22880723-22880755)
chr6 (16-52)||(32869677-32869713)
[»] scaffold0321 (1 HSPs)
scaffold0321 (16-51)||(10174-10209)
[»] scaffold0237 (1 HSPs)
scaffold0237 (16-51)||(4029-4064)
[»] chr7 (8 HSPs)
chr7 (16-51)||(7389389-7389424)
chr7 (16-51)||(8080448-8080483)
chr7 (16-51)||(11044188-11044223)
chr7 (16-51)||(36361978-36362013)
chr7 (16-51)||(38837217-38837252)
chr7 (16-48)||(3783998-3784030)
chr7 (16-52)||(19329841-19329877)
chr7 (16-52)||(35137532-35137568)


Alignment Details
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 7856751 - 7856826
Alignment:
Q  55 tttttatgcacttaaatcaagcataatagtctgatgattgtaaagttattataaccaattttaactaattatgcac 130  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7856751 tttttatgcatttaaatcaagcataatagtttgatgattgtaaagttattataaccaattttaactaattatgcac 7856826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 7856815 - 7856862
Alignment:
Q  159 ctaattatgcacattattagttgtaatgtatggacaatataatactct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7856815 ctaattatgcacattattagttgtaatgtatggacaatataatactct 7856862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 35785234 - 35785197
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaa 53  Q
    |||||||||||||| |||||||||||||||||||||||    
T  35785234 gtattgccacctaagggtgtctatgtatcattactcaa 35785197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 40145442 - 40145406
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||| ||||||||||||||||||||||    
T  40145442 gtattgccacctaagggtgtctatgtatcattactca 40145406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 41470481 - 41470521
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaaatt 56  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  41470481 gtattgccacctaaaggtgtctatgtattattactctaatt 41470521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 36875668 - 36875702
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattact 50  Q
    |||||||||||||| ||||||||||||||||||||    
T  36875668 gtattgccacctaagggtgtctatgtatcattact 36875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 14831849 - 14831813
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    ||||||||||||||  |||||||||||||||||||||    
T  14831849 gtattgccacctaagagtgtctatgtatcattactca 14831813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 18520949 - 18520981
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcatta 48  Q
    |||||||||||||| ||||||||||||||||||    
T  18520949 gtattgccacctaagggtgtctatgtatcatta 18520981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 33149703 - 33149739
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  33149703 gtattaccacctaagggtgtctatgtatcattactca 33149739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 42414367 - 42414403
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||  ||||||||||||||||||||||    
T  42414367 gtattgccacctactggtgtctatgtatcattactca 42414403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 3481689 - 3481653
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||||||||||||||||||||||||||    
T  3481689 gtattgccacctaaaggtgtctatgtatcattactca 3481653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 11511527 - 11511565
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaaa 54  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11511527 gtattgccacctaagggtgtctatgtatcattactcaaa 11511565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 6034079 - 6034042
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaa 53  Q
    |||||||||||||| |||||||||||||||||||||||    
T  6034079 gtattgccacctaagggtgtctatgtatcattactcaa 6034042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 50526236 - 50526273
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaa 53  Q
    |||||||||||||||| |||||||||||||||||||||    
T  50526236 gtattgccacctaaagatgtctatgtatcattactcaa 50526273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 29234310 - 29234354
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaaattttta 60  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||    
T  29234310 gtattgccatctaagggtgtctatgtatcattactctaattttta 29234354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 29239921 - 29239886
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  29239921 gtattgccacctaagggtgtctatgtatcattactc 29239886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 41236382 - 41236347
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  41236382 gtattgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 42044432 - 42044467
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  42044432 gtattgccacctaagggtgtctatgtatcattactc 42044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 54473598 - 54473636
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaaa 54  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  54473598 gtattgtcacctaagggtgtctatgtatcattactcaaa 54473636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 17470440 - 17470405
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  17470440 gtattgccacctaaaggtgtctatgtatcattactc 17470405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 53982046 - 53982010
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||| ||||||||||||||||||||||    
T  53982046 gtattgccacctaagggtgtctatgtatcattactca 53982010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 11095418 - 11095453
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  11095418 gtattgccacctaagggtgtctatgtatcattactc 11095453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 27714956 - 27714991
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    ||||| ||||||||||||||||||||||||||||||    
T  27714956 gtattaccacctaaaggtgtctatgtatcattactc 27714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 49607449 - 49607414
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  49607449 gtattgccacctaagggtgtctatgtatcattactc 49607414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 54868960 - 54868995
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  54868960 gtattgccacctaagggtgtctatgtatcattactc 54868995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 33644235 - 33644198
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaa 53  Q
    ||||||||||| || |||||||||||||||||||||||    
T  33644235 gtattgccacccaagggtgtctatgtatcattactcaa 33644198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 40701513 - 40701475
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaaa 54  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  40701513 gtattgccacctaagggtgtctatgtatcattactcaaa 40701475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 28381720 - 28381756
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||| ||||||||||||||||||||||    
T  28381720 gtattgccacctaagggtgtctatgtatcattactca 28381756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 9058515 - 9058480
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  9058515 gtattgccacctaagggtgtctatgtatcattactc 9058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 30915498 - 30915463
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  30915498 gtattgccacctaagggtgtctatgtatcattactc 30915463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 33436165 - 33436200
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  33436165 gtattgccacctaagggtgtctatgtatcattactc 33436200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 17820069 - 17820111
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaaatttt 58  Q
    ||||||||||||| || |||||||||||||| |||||||||||    
T  17820069 gtattgccacctatagttgtctatgtatcataactcaaatttt 17820111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 38882879 - 38882913
Alignment:
Q  17 tattgccacctaaaggtgtctatgtatcattactc 51  Q
    ||||||||||||| |||||||||||||||||||||    
T  38882879 tattgccacctaagggtgtctatgtatcattactc 38882913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 4060720 - 4060683
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaa 53  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  4060720 gtattgtcacctaagggtgtctatgtatcattactcaa 4060683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 13438378 - 13438342
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  13438378 gtattgtcacctaagggtgtctatgtatcattactca 13438342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 19930885 - 19930917
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcatta 48  Q
    |||||||||||||| ||||||||||||||||||    
T  19930885 gtattgccacctaagggtgtctatgtatcatta 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 27864739 - 27864703
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  27864739 gtattgccacataagggtgtctatgtatcattactca 27864703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 28863490 - 28863458
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcatta 48  Q
    |||||||||||||| ||||||||||||||||||    
T  28863490 gtattgccacctaagggtgtctatgtatcatta 28863458  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 44548441 - 44548483
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaaatttt 58  Q
    |||||||||||||||| |||||||||||||||| |||||||||    
T  44548441 gtattgccacctaaagatgtctatgtatcattaatcaaatttt 44548483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 48716347 - 48716385
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaaa 54  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  48716347 gtattgccacctaagggtgtctatgtatcattactcaaa 48716385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 51898748 - 51898794
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc-aaatttttat 61  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  51898748 gtattgccacctaaagatgtctatgtatcattactctaaatttttat 51898794  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 9474941 - 9474978
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaa 53  Q
    |||||||||||||| |||||||||||||||||||||||    
T  9474941 gtattgccacctaagggtgtctatgtatcattactcaa 9474978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 37649233 - 37649197
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||||| ||||||||||||||||||||    
T  37649233 gtattgccacctaaagatgtctatgtatcattactca 37649197  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 2581950 - 2581915
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  2581950 gtattgccacctaagggtgtctatgtatcattactc 2581915  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 8346453 - 8346488
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    ||||||||||||||||||| ||||||||||||||||    
T  8346453 gtattgccacctaaaggtgactatgtatcattactc 8346488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 38595189 - 38595154
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||| |||||||||||||||    
T  38595189 gtattgccacctaaaggtgtttatgtatcattactc 38595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 38632386 - 38632421
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  38632386 gtattgccacctaagggtgtctatgtatcattactc 38632421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 27564800 - 27564836
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||| | ||||||||||||||||||||    
T  27564800 gtattgccacctaaggatgtctatgtatcattactca 27564836  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 47452385 - 47452421
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  47452385 gtattaccacctaagggtgtctatgtatcattactca 47452421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 50591065 - 50591105
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaaatt 56  Q
    |||||||||||||| ||||| |||||||||| |||||||||    
T  50591065 gtattgccacctaagggtgtttatgtatcataactcaaatt 50591105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 50630493 - 50630453
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaaatt 56  Q
    |||||||||||||| ||| ||||||||||||||||| ||||    
T  50630493 gtattgccacctaagggtatctatgtatcattactctaatt 50630453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 994 - 1030
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||||| ||||||||||||||||||||    
T  994 gtattgccacctaaagatgtctatgtatcattactca 1030  T

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Target: scaffold1267 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 994 - 1030
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||||| ||||||||||||||||||||    
T  994 gtattgccacctaaagatgtctatgtatcattactca 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 504186 - 504222
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||| ||||||||||||||||||||||    
T  504186 gtattgccacctaagggtgtctatgtatcattactca 504222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 37038514 - 37038479
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||||| |||||||||||||||||||    
T  37038514 gtattgccacctaaagatgtctatgtatcattactc 37038479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 9122230 - 9122196
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattact 50  Q
    |||||||||||||| ||||||||||||||||||||    
T  9122230 gtattgccacctaagggtgtctatgtatcattact 9122196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 40424008 - 40424046
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactcaaa 54  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  40424008 gtattgccacctaagggtatctatgtatcattactcaaa 40424046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 15197368 - 15197332
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    ||||||||||||||  |||||||||||||||||||||    
T  15197368 gtattgccacctaagagtgtctatgtatcattactca 15197332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 20074999 - 20075035
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||| | ||||||||||||||||||||    
T  20074999 gtattgccacctaaggatgtctatgtatcattactca 20075035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 23122662 - 23122698
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  23122662 gtattgccacttaagggtgtctatgtatcattactca 23122698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 34012361 - 34012397
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  34012361 gtattaccacctaagggtgtctatgtatcattactca 34012397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 17598589 - 17598553
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||| ||||||||||||||||||||||    
T  17598589 gtattgccacctaagggtgtctatgtatcattactca 17598553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 6209530 - 6209565
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  6209530 gtattgccacctaagggtgtctatgtatcattactc 6209565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 29857862 - 29857827
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29857862 gtattgccatctaaaggtgtctatgtatcattactc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 15832611 - 15832577
Alignment:
Q  17 tattgccacctaaaggtgtctatgtatcattactc 51  Q
    ||||| |||||||||||||||||||||||||||||    
T  15832611 tattgtcacctaaaggtgtctatgtatcattactc 15832577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 22880723 - 22880755
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcatta 48  Q
    |||||||||||||| ||||||||||||||||||    
T  22880723 gtattgccacctaagggtgtctatgtatcatta 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 32869713 - 32869677
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||| |||||||||||||| |||||||    
T  32869713 gtattgccacctaagggtgtctatgtatctttactca 32869677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 10174 - 10209
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    ||||||||||||||||||||||||||||||| ||||    
T  10174 gtattgccacctaaaggtgtctatgtatcataactc 10209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 4064 - 4029
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    ||||||||| ||||||||||||||||||||||||||    
T  4064 gtattgccatctaaaggtgtctatgtatcattactc 4029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 7389424 - 7389389
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  7389424 gtattgccacctaagggtgtctatgtatcattactc 7389389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 8080448 - 8080483
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  8080448 gtattgccacctaagggtgtctatgtatcattactc 8080483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 11044223 - 11044188
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  11044223 gtattgccacctaagggtgtctatgtatcattactc 11044188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 36361978 - 36362013
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  36361978 gtattgccacctaagggtgtctatgtatcattactc 36362013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 38837252 - 38837217
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  38837252 gtattgccacctaagggtgtctatgtatcattactc 38837217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 3784030 - 3783998
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcatta 48  Q
    |||||||||||||| ||||||||||||||||||    
T  3784030 gtattgccacctaagggtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 19329877 - 19329841
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||| | ||||||||||||||||||||    
T  19329877 gtattgccacctaaggatgtctatgtatcattactca 19329841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 35137568 - 35137532
Alignment:
Q  16 gtattgccacctaaaggtgtctatgtatcattactca 52  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  35137568 gtattgccacctaagggtgtctatttatcattactca 35137532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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