View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17496_low_48 (Length: 214)

Name: NF17496_low_48
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17496_low_48
NF17496_low_48
[»] chr6 (2 HSPs)
chr6 (1-206)||(9692860-9693068)
chr6 (1-83)||(674097-674179)
[»] chr2 (1 HSPs)
chr2 (1-81)||(472459-472539)
[»] scaffold0003 (1 HSPs)
scaffold0003 (21-89)||(320738-320806)
[»] chr5 (1 HSPs)
chr5 (1-83)||(1249119-1249200)
[»] chr3 (2 HSPs)
chr3 (25-88)||(27786527-27786590)
chr3 (1-83)||(55121185-55121267)
[»] chr1 (2 HSPs)
chr1 (24-87)||(14231116-14231179)
chr1 (22-83)||(30692784-30692845)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 9692860 - 9693068
Alignment:
Q  1 ataactaatgtatttggtaatatttataaaccagatatatcagatattcgatgaaccaaaaaagttgtgtttttct-----tataaatatgatttaagaa 95  Q
    ||||||||| ||||| |||  ||||||||| || ||||||||||||||| ||||||||||||||||||||||| ||     ||||||||||||||||||     
T  9692860 ataactaatatatttagtatcatttataaatcaaatatatcagatattcaatgaaccaaaaaagttgtgttttgcttataatataaatatgatttaagag 9692959  T
Q  96 agtatatttgtatatacattaaacaattcacattcacagcatgcaaatgaagataatcaccaatttcaaagacatgacacaaaaatctgtaaactaacat 195  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9692960 agtatatt--tatatacattaaacaattcacattcacaacatgcaaatgaagataatcacgaatttcaaagacatgacacaaaaatctgtaaactaacat 9693057  T
Q  196 attcttggaca 206  Q
    ||  |||||||    
T  9693058 ataattggaca 9693068  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 674097 - 674179
Alignment:
Q  1 ataactaatgtatttggtaatatttataaaccagatatatcagatattcgatgaaccaaaaaagttgtgtttttcttataaat 83  Q
    |||| ||||||||||| | ||||||||| |||| |||||| || ||||| ||||| | ||||| |||| |||| |||||||||    
T  674097 ataattaatgtatttgctcatatttatagaccaaatatattagttattcaatgaatctaaaaaattgttttttgcttataaat 674179  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 472459 - 472539
Alignment:
Q  1 ataactaatgtatttggtaatatttataaaccagatatatcagatattcgatgaaccaaaaaagttgtgtttttcttataa 81  Q
    |||||||||||||||||| ||||||||| |||| |||||| || ||||| || |||| ||||| ||||||||| |||||||    
T  472459 ataactaatgtatttggtcatatttatagaccaaatatattagttattcaattaacctaaaaaattgtgttttgcttataa 472539  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 320738 - 320806
Alignment:
Q  21 tatttataaaccagatatatcagatattcgatgaaccaaaaaagttgtgtttttcttataaatatgatt 89  Q
    |||||||||||||||||||| || ||||  ||||| | ||||||||||||||| ||||||||| |||||    
T  320738 tatttataaaccagatatattagttatttaatgaatctaaaaagttgtgttttgcttataaatgtgatt 320806  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 1249200 - 1249119
Alignment:
Q  1 ataactaatgtatttggtaatatttataaaccagatatatcagatattcgatgaaccaaaaaagttgtgtttttcttataaat 83  Q
    ||||||||||||| | || ||||||||||| |||||| || || ||||  ||||||| |||||||||| ||||||||||||||    
T  1249200 ataactaatgtatgttgtcatatttataaatcagatacattagctatttaatgaacctaaaaagttgt-tttttcttataaat 1249119  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 27786527 - 27786590
Alignment:
Q  25 tataaaccagatatatcagatattcgatgaaccaaaaaagttgtgtttttcttataaatatgat 88  Q
    |||| |||| |||||| || ||||| ||||||| ||||||||||||||| ||||||||| ||||    
T  27786527 tatagaccaaatatattaggtattcaatgaacctaaaaagttgtgttttgcttataaatgtgat 27786590  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 55121267 - 55121185
Alignment:
Q  1 ataactaatgtatttggtaatatttataaaccagatatatcagatattcgatgaaccaaaaaagttgtgtttttcttataaat 83  Q
    |||| ||||||||||||| | |||||||||||| ||| || || ||||| ||||||| ||||| |||| ||||  ||||||||    
T  55121267 ataattaatgtatttggtcacatttataaaccaaatacattagttattcaatgaacctaaaaaattgttttttgtttataaat 55121185  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 14231116 - 14231179
Alignment:
Q  24 ttataaaccagatatatcagatattcgatgaaccaaaaaagttgtgtttttcttataaatatga 87  Q
    ||||| |||||||| || || ||||| ||||||| |||| |||||||||| |||||||||||||    
T  14231116 ttatagaccagatacattagttattcaatgaacctaaaatgttgtgttttccttataaatatga 14231179  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 30692845 - 30692784
Alignment:
Q  22 atttataaaccagatatatcagatattcgatgaaccaaaaaagttgtgtttttcttataaat 83  Q
    ||||||| |||| ||| || |||||||| |  |||| |||||||||||||||||||||||||    
T  30692845 atttatagaccaaatacattagatattcaacaaacctaaaaagttgtgtttttcttataaat 30692784  T

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