View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_49 (Length: 213)
Name: NF17496_low_49
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 43180595 - 43180405
Alignment:
| Q |
17 |
aaaaagtgtatgtaaa--gcaatttaaaaaaccaaatatacttgattacccctgaattgcaaagtgaggttccttggtttgttaagtgtatatatgaatg |
114 |
Q |
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| T |
43180595 |
aaaaagtgtatgtaaattgcaatttaaaaaaccaaatatacttgattacccctgaattgcaaagtgaggttccttggtttgttaagtgtatatatgaatg |
43180496 |
T |
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| Q |
115 |
aatggtgtgcacactttacaatctgctatgtaattttcatccattaacagcattcttcatctctataaaaccttttcttcgttatattctt |
205 |
Q |
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| T |
43180495 |
aatggtgtgcacactttacaatctgctatgtaattttcatccattagcagcattcttcatctctataaaaccttttcttcgttatcttctt |
43180405 |
T |
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Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 51863202 - 51863275
Alignment:
| Q |
36 |
atttaaaaaaccaaatatacttgattacccctgaattgcaaagtgaggttccttggtttgttaagtgtatatat |
109 |
Q |
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|||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
51863202 |
atttaacaaaccaaatatacttcattatccctgaattgcaaagtgaggttccttggtttgttatgtatatatat |
51863275 |
T |
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