View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_5 (Length: 468)
Name: NF17496_low_5
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 15 - 454
Target Start/End: Original strand, 50094602 - 50095040
Alignment:
| Q |
15 |
aaagggatccaaatgctcccaaaagtgtgttgtctggattcaagttattttctcgaaaggaaagagaggtgtgttttatgttttacataccggtggtgtg |
114 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50094602 |
aaagggatccaaatgctcccaagagtgtgttgtctggattcaagttattttctcgaaaggaaagagaggtgtgttttatgttttacataccggtggcgtg |
50094701 |
T |
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| Q |
115 |
gaaatgatcacttttcttctgtaaaattgtctaaaactgttgatggaatgaatttcaaacactgctttttcttaatgacggaatctaaagaaaactaata |
214 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50094702 |
gaaatgatcacttttcttctataaaattgtctaaaactgttgatggaatgaatttcaaacactgctttttcttaatgacagaatctaaagaaaactaata |
50094801 |
T |
|
| Q |
215 |
ttgggatttcatttacggatgtggtaagagtaattggagagaaatggaaaaagatgtcagatatggctcgttgacagttatttctgttttctttcagcca |
314 |
Q |
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| T |
50094802 |
ttgggatttcatttacggatgtggtaagagtaattggagagaaatggaaaaagatgtcagatatggctcgttgacagttatttttgttttctttcagcca |
50094901 |
T |
|
| Q |
315 |
ggtccatttgcacctaatgtcatttgtgattactgtattgaatgtacagctgagtaaaaggagtcatacaaggcaaaaacccgtgtttgatagaaaaata |
414 |
Q |
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| T |
50094902 |
ggtccatttgcacctaatgtcatttgtgattactgtattgaatgtacagctgagtaaaatgagtcatacaaggcaaaaacccgtg-ttgatagaaaaata |
50095000 |
T |
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| Q |
415 |
ttatttagatgaaattagtggctacactaattcacaagtg |
454 |
Q |
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| T |
50095001 |
ttatctagatgaaattagtggctactctaattcacaagtg |
50095040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 287
Target Start/End: Original strand, 7073822 - 7073929
Alignment:
| Q |
180 |
tttttcttaatgacggaatctaaagaaaactaatattgggatttcatttacggatgtggtaagagtaattggagagaaatggaaaaagatgtcagatatg |
279 |
Q |
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||||| |||||||| ||||||||||||||||||| ||| |||||||||||||| |||| ||||||| ||||||| ||||||||||| |||||| |||| |
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| T |
7073822 |
ttttttttaatgacagaatctaaagaaaactaatcctggaatttcatttacggacgtgggaagagtacttggagaaaaatggaaaaatctgtcaggtatg |
7073921 |
T |
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| Q |
280 |
gctcgttg |
287 |
Q |
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||| |||| |
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| T |
7073922 |
gctggttg |
7073929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 298
Target Start/End: Complemental strand, 35497709 - 35497592
Alignment:
| Q |
181 |
ttttcttaatgacggaatctaaagaaaactaatattgggatttcatttacggatgtggtaagagtaattggagagaaatggaaaaagatgtcagatatgg |
280 |
Q |
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|||| |||| ||| |||| |||||||| ||||| ||||||||||||||||||||||| || || ||||||| || |||||||| ||||||| ||||| |
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| T |
35497709 |
tttttttaacgacagaatataaagaaagctaatcctgggatttcatttacggatgtggcaaagttacttggagaaaactggaaaaaaatgtcaggtatgg |
35497610 |
T |
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| Q |
281 |
ctcgttgacagttatttc |
298 |
Q |
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| T |
35497609 |
ctgtttgacagttgtttc |
35497592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 35497894 - 35497817
Alignment:
| Q |
19 |
ggatccaaatgctcccaaaagtgtgttgtctggattcaagttattttctcgaaaggaaagagaggtgtgttttatgtt |
96 |
Q |
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|||||||||||| ||||| || | |||||||||||| ||| ||||||| || |||||||||||||||||||||||| |
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| T |
35497894 |
ggatccaaatgcacccaagaggggaatgtctggattcatgttcttttctcaaatggaaagagaggtgtgttttatgtt |
35497817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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