View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_50 (Length: 209)
Name: NF17496_low_50
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 29433295 - 29433471
Alignment:
| Q |
15 |
gaaaatacataagttctcaatttgttgtgcagttttttgctgaagccggtttcccttgtccgcgtaaaagaaatccttctgatcacttcctaagatgtat |
114 |
Q |
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| T |
29433295 |
gaaaatacataagttctcaatttgttgtgcagttttttgctgaagccggtttcccttgtccgcgtaaaagaaatccttctgatcacttcctaagatgtat |
29433394 |
T |
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| Q |
115 |
caattctgatttcgatgttgtaacggctacactaaaggggtctcaaagaattcatgtatgtatcatttagtaattct |
191 |
Q |
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| T |
29433395 |
caattctgatttcgatgttgtaacggctacactaaaggggtctcaaagaattcatgtatgtatcatttagtaattct |
29433471 |
T |
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Target: chr4; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 34 - 191
Target Start/End: Original strand, 29466342 - 29466499
Alignment:
| Q |
34 |
atttgttgtgcagttttttgctgaagccggtttcccttgtccgcgtaaaagaaatccttctgatcacttcctaagatgtatcaattctgatttcgatgtt |
133 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |
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| T |
29466342 |
atttcttgtgcagttttttgctgaagctggtttcccttgtccacgtaaaagaaatccttctgatcacttcctaagatgcatcaattctgacttcgacgtt |
29466441 |
T |
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| Q |
134 |
gtaacggctacactaaaggggtctcaaagaattcatgtatgtatcatttagtaattct |
191 |
Q |
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| T |
29466442 |
gtaacggctacactgaagggatctcaaaggattcctgtatgtattatttagtaattct |
29466499 |
T |
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