View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_8 (Length: 443)
Name: NF17496_low_8
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 143 - 439
Target Start/End: Original strand, 14250691 - 14250989
Alignment:
| Q |
143 |
tgtaatgtaatgattgagtttgaaacaggaagtggtggagacaggaagaagcacatggggggtggggtatagtacttgtattacacagctcatacccctc |
242 |
Q |
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| T |
14250691 |
tgtaatgtaatgattgagtttgaaacaggaagtggtggagacaggaagaagcacatggggggtggggtatagtacttgtattacacagctcatacccctc |
14250790 |
T |
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| Q |
243 |
taactcttctcttttacactactaatgttgtagttgttgtttcccacgcgccttctttatttcttttttatcaatgttcaaaaaagaaatgttatgaac- |
341 |
Q |
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| T |
14250791 |
taactcttctcttttacactactaatgttgtagttgttgtttcccacgcgccttctttatttcttttttatcaatgttcaaaaaataaatgttatgaacg |
14250890 |
T |
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| Q |
342 |
----tttataactctttctgatattcactttttcatttaataaaacacatatggttcttatcaatttatgtagtttatatgataatcacgttcatctcac |
437 |
Q |
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| T |
14250891 |
atcttttataactctttc---tattcactttttcatctaataaaacccatatggttcttaccaatttatgtagtttatatgatattcacgttaatttcac |
14250987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 14250567 - 14250631
Alignment:
| Q |
19 |
gtggtgatagttgttgtttccttgtggttagacatttgaggttggaatatttggggtttgggttt |
83 |
Q |
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| T |
14250567 |
gtggtgatagttgttgtttccttgtggttagacatttgaggttggaatatttggggtttgggttt |
14250631 |
T |
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