View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17496_low_9 (Length: 439)
Name: NF17496_low_9
Description: NF17496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17496_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 423
Target Start/End: Original strand, 38605236 - 38605652
Alignment:
| Q |
11 |
cacagaaaaagtatgtcattctgccttagttcaacatcaaatttagttggaacatcgcatattgctgaaacaagggattccaaaacaggggtagtgatga |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38605236 |
cacagaaaaagtatgtcattctgccttagttcaacatcaaatttagttggaacatcgcatattgctgaaacaagagattccaaaacaggggtagtgatga |
38605335 |
T |
|
| Q |
111 |
gatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38605336 |
gatgtgaattactcctaaaagcccacttgataaagtgaataagaatatgaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaat |
38605435 |
T |
|
| Q |
211 |
aattttgagtagaaaatgtggttgat-------gctgatgcagagtttccaagcatgtgaaactgaaacatctattaaatttgtaataataattatggag |
303 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38605436 |
aattttgagtagaaaatgtggttgatgctgatggctgatgcagagtttccaagcatgtgaaactgaaacatctattaaatttgtaattataattatgga- |
38605534 |
T |
|
| Q |
304 |
aggaggaggagtaccactaagaaatgtcattactatccggaaatcttcagatgcagtgacatcatctggacaaggaggaaggtaagtgtaagtgtaacct |
403 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
38605535 |
--gaggaggagtaccactaagaaatgtcatcactatccggaaatcttcagatgcagtgacatcgtctggacaaggaggaaggtaagtgtaagtgtagcct |
38605632 |
T |
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| Q |
404 |
tgagaagaagagtgaagatt |
423 |
Q |
| |
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||||||||||||||| |||| |
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| T |
38605633 |
tgagaagaagagtgacgatt |
38605652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 40180851 - 40180884
Alignment:
| Q |
80 |
acaagggattccaaaacaggggtagtgatgagat |
113 |
Q |
| |
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||||||||||||| |||||||||||||||||||| |
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| T |
40180851 |
acaagggattccagaacaggggtagtgatgagat |
40180884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 68 - 228
Target Start/End: Complemental strand, 44460121 - 44459952
Alignment:
| Q |
68 |
catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaatta------ctcctaa---aagcccacttgataaagtgaataagattat |
158 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||| | || | ||||| | |||||||||| |||||||| |||||||||| |
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| T |
44460121 |
catatttctgaaacaagggattccagaacaggggtagtgatgagatcttgataagtgttcctcctcatccaagcccactttataaagtggataagattat |
44460022 |
T |
|
| Q |
159 |
gaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatg |
228 |
Q |
| |
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| T |
44460021 |
gaggcgaaacctttggggtttcaattaatttagtttgtgaggaggtttcaataactttgagtacaaaatg |
44459952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 68 - 228
Target Start/End: Complemental strand, 44467654 - 44467485
Alignment:
| Q |
68 |
catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaatta------ctcctaa---aagcccacttgataaagtgaataagattat |
158 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| | || | ||||| | |||||||||| |||||||| |||||||||| |
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| T |
44467654 |
catatttctgaaacaagggattccagaacaggggtagtgatgagatcttgataagtgttcctcctcatccaagcccactttataaagtggataagattat |
44467555 |
T |
|
| Q |
159 |
gaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatg |
228 |
Q |
| |
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|||| ||||||||||||||||||| | | ||||||| ||||||||||||||| |||||||| |||||| |
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| T |
44467554 |
gaggcgaaacctttggggtttcaattaatttagtttgtgaggaggtttcaataactttgagtacaaaatg |
44467485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 228
Target Start/End: Original strand, 34502528 - 34502698
Alignment:
| Q |
68 |
catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaatta---------ctcctaaaagcccacttgataaa-gtgaataagatta |
157 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||| ||||||||| || | ||||| |||||||||| ||||| ||| ||||||||| |
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| T |
34502528 |
catattgctgaaacaagggattccagaacaagggtagtaatgagatgtttataagtgttcctcctcctccaagcccacttcataaaagtggataagatta |
34502627 |
T |
|
| Q |
158 |
tgaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatg |
228 |
Q |
| |
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||||| |||||||||||||||||| | | |||||||| | |||| |||||||| |||||||| |||||| |
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| T |
34502628 |
tgaggcgaaacctttggggtttcagttaatttagtttgagaagaggcttcaataactttgagtacaaaatg |
34502698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 212
Target Start/End: Complemental strand, 44459420 - 44459275
Alignment:
| Q |
67 |
gcatattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaa |
166 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||||||||| | ||| || | || || |||| ||||||| |||||||||||||| | |
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| T |
44459420 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga |
44459321 |
T |
|
| Q |
167 |
acctttggggtttcaactggtatagtttgacaggaggtttcaataa |
212 |
Q |
| |
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|||||||||| |||||| | |||||||||| ||||||||||||| |
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| T |
44459320 |
acctttggggcttcaacaaatttagtttgacaagaggtttcaataa |
44459275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 212
Target Start/End: Complemental strand, 44466953 - 44466808
Alignment:
| Q |
67 |
gcatattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaa |
166 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| | ||| || | || || |||| ||||||| |||||||||||||| | |
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| T |
44466953 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga |
44466854 |
T |
|
| Q |
167 |
acctttggggtttcaactggtatagtttgacaggaggtttcaataa |
212 |
Q |
| |
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|||||||||| |||||| | |||||||||| ||||||||||||| |
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| T |
44466853 |
acctttggggcttcaacaaatttagtttgacaagaggtttcaataa |
44466808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 237
Target Start/End: Complemental strand, 46358991 - 46358821
Alignment:
| Q |
67 |
gcatattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaa |
166 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||| | ||| || | || || |||| ||||||| |||||||||||||| | |
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|
| T |
46358991 |
gcatatttctgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga |
46358892 |
T |
|
| Q |
167 |
acctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatgtggttgatg |
237 |
Q |
| |
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|||||||||| |||||| | |||||||||| ||||||||||||| ||| ||| ||| ||| ||||||| |
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|
| T |
46358891 |
acctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgatg |
46358821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 410732 - 410692
Alignment:
| Q |
67 |
gcatattgctgaaacaagggattccaaaacaggggtagtga |
107 |
Q |
| |
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|||||||||||||| |||||| |||| |||||||||||||| |
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|
| T |
410732 |
gcatattgctgaaataagggactccagaacaggggtagtga |
410692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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