View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17497_low_1 (Length: 501)
Name: NF17497_low_1
Description: NF17497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17497_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 25 - 495
Target Start/End: Complemental strand, 5055593 - 5055123
Alignment:
| Q |
25 |
cttaatacctatcaagcttgataatcctaccgaaaattctatatacgaaagtaactgaaagataagactcatacttatggtacaaaaattggttacattg |
124 |
Q |
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| T |
5055593 |
cttaatacctatcaagcttgatactcctaccgaaaattctatatacgaaagtaactgaaagataagactcatacttatggtacaaaaattggttacattg |
5055494 |
T |
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| Q |
125 |
taaaatttaaagaactactacatgactcacatggcttgatgttgtaggaactgtacaatttcttagagggagagtaaacaatgatcctgatcctgatgat |
224 |
Q |
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| T |
5055493 |
taaaatttaaagaactactacatgactcacatggcttgatgttgtaggaactgtacaatttcttagagggagagtaaacaatgatcctgatcctgatgat |
5055394 |
T |
|
| Q |
225 |
gcaaagctttgtgaagggatgctgaattgttcatagagagccattttattccttggaggtgcttttggtcctcctttctctgcatctttaacatgcaacc |
324 |
Q |
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| T |
5055393 |
gcaaaactttgtgaagggatgctgaattgttcatagagagccattttattccttggaggtgcttttggtcctcctttctctgcatctttaacatgcaacc |
5055294 |
T |
|
| Q |
325 |
taggaaacattggacttatctcctttccctcgtcaattgcccctttcatcctcttcctttttccacactctatcaactcataaaaagcttctcatctttg |
424 |
Q |
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| T |
5055293 |
taggaaacattggacttatctcctttccctcgtcaattgcccctttcatcctattcctttttccacactctttcaactcataaaaagcttctcatctttg |
5055194 |
T |
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| Q |
425 |
ccaaatttacaaagtatatagtttacattcctttcgcataaaaatgccaatagagtatgttcatttcagtc |
495 |
Q |
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| T |
5055193 |
ccaaatttacaaagtatatagtttacattcctttcgcataaaattgccaatagagtatgttcttttcagtc |
5055123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 248 - 416
Target Start/End: Complemental strand, 5052223 - 5052054
Alignment:
| Q |
248 |
gaattgttcatagagagccattttattccttggaggtgcttttggtcctcctttctctgcatctttaacatgcaacctaggaaacattggacttatctcc |
347 |
Q |
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||||||||| |||||||||||||||||| |||| |||| |||||| |||||||||||| |||||||| ||||| ||||| || ||||||||||||||| |
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| T |
5052223 |
gaattgttcgtagagagccattttattcgttgggggtgattttggccctcctttctctaaatctttaatgtgcaatctagggaatattggacttatctcc |
5052124 |
T |
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| Q |
348 |
tttccctcgtcaattgcccctttcat-cctcttcctttttccacactctatcaactcataaaaagcttct |
416 |
Q |
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| T |
5052123 |
tttctctcatcaattgcccctttcatccctattccttttcccacactctatcaactcacaaaaaacttct |
5052054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 47903815 - 47903736
Alignment:
| Q |
249 |
aattgttcatagagagccattttattccttggaggtgcttttggtcctcctttctctgcatctttaacatgcaacctagg |
328 |
Q |
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| T |
47903815 |
aattgctcatagagagccattttattcctaggaggtgctcttggccctcccttctctgtatcaccaacatgtaacctagg |
47903736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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