View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17497_low_3 (Length: 226)
Name: NF17497_low_3
Description: NF17497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17497_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 47782083 - 47782231
Alignment:
| Q |
7 |
taaaaagcatcgagggaagttggattcggccggttggaatggtacgacaatgaaccgagtcaactcaaatatatttttaaactcgacttgacaatcaaca |
106 |
Q |
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| T |
47782083 |
taaaaagcattgagggaagttggattcggccggttggactggtacgacaatgaaccgagtcaactcaaatatatttttaaactcgactcgacaatcaaca |
47782182 |
T |
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| Q |
107 |
tgttgaatttggttcatgaaccaaataaattgaaagtgaagatcgttaa |
155 |
Q |
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| T |
47782183 |
cattgaatttggttcatgaactaaataaattgaaagttaagatcgttaa |
47782231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 47782267 - 47782340
Alignment:
| Q |
153 |
taagagttttaaggcaggaattttttcaattctagtgattaaaatttcttagtttttgtctcggatactttaaa |
226 |
Q |
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| T |
47782267 |
taagagttttaaggaaagaattttttcaattctagtgattaaaatttcttagtttttgtctgggatactttaaa |
47782340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 25253833 - 25253755
Alignment:
| Q |
54 |
caatgaaccgagtcaactcaaatatatttttaaactcgacttgacaatcaacatgttgaatttggttcatgaaccaaat |
132 |
Q |
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| T |
25253833 |
caatgaaccgaaccaactcgaatatagtttggaactcgactcgacaataaacttgttgaacttggttcatgaaccaaat |
25253755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 38492997 - 38493075
Alignment:
| Q |
54 |
caatgaaccgagtcaactcaaatatatttttaaactcgacttgacaatcaacatgttgaatttggttcatgaaccaaat |
132 |
Q |
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| T |
38492997 |
caatgaaccgagttaactcaaatatggttcgaagttcgactcgacaattaacttgttgaatttggttcatgaaccaaat |
38493075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 12429007 - 12428931
Alignment:
| Q |
54 |
caatgaaccgagtcaactcaaatatatttttaaactcgacttgacaatcaacatgttgaatttggttcatgaaccaa |
130 |
Q |
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| T |
12429007 |
caatgaaccgaaccaactcaaatatagttcagaactcgactcgacaatgaacttgttgaacttggtttatgaaccaa |
12428931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 31021996 - 31021916
Alignment:
| Q |
52 |
gacaatgaaccgagtcaactcaaatatatttttaaactcgacttgacaatcaacatgttgaatttggttcatgaaccaaat |
132 |
Q |
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||||||||||||| |||||| |||||| || ||||||||| || ||| ||| ||||| ||||||||||||||||||| |
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| T |
31021996 |
gacaatgaaccgaaccaactcgaatatagttcggaactcgactcgataattaactcgttgagtttggttcatgaaccaaat |
31021916 |
T |
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