View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17498_high_1 (Length: 531)
Name: NF17498_high_1
Description: NF17498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17498_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 40313982 - 40313472
Alignment:
| Q |
1 |
atgaagttaactaaaccnnnnnnnttgcatggcatgtctagtcaaaatactgttgagttgcatcagccattaatcatttctcaataaccgtgagaaaatt |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40313982 |
atgaagttaactaaaccaaaaaaattgcatggcatgtctagtcaaaatactgttgagttgcatcagccattaatcatttctcaataaccgtgagaaaatt |
40313883 |
T |
|
| Q |
101 |
aactgtctcaacagaataactgtnnnnnnnnnnnnnnnnnnaacacaagaattaatcttgttactaataatttacatatgatattacataaatttcaatg |
200 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40313882 |
aactgtctcaacagaataactgtcaccaccaccaccac---aacacaagaattaatcttgttactaataatttacatatgatattacataaatttcaatg |
40313786 |
T |
|
| Q |
201 |
tcctccacctgatatgatatctctaggattcattcattcatattcagagtgtcttgaaatttgtgcaacagaataagactttagagtcaaatattattat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40313785 |
tcctccacctgatatgatatctctaggattcattcat----attcagagtgtcttgaaatttgtgcaacagaataagactttagagtcaaatattattat |
40313690 |
T |
|
| Q |
301 |
tagaacaaaaggatctagaaaaagatatggtcttattttgtcggcattttctgtccttttggcttcctcatccattaattttgctacactttattcatca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40313689 |
tagaacaaaaggatctagaaaaagatatggtcttattttgtcggcattttctgtccttttggcttcctcatccattaattttgctacactttattcatca |
40313590 |
T |
|
| Q |
401 |
tgttcatatgttactttaatttggtggactaggaaccatgccatagaacagatagaatcccttcattcaaaccatcgatcannnnnnnnatttattcctg |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40313589 |
tgttcatatgttactttaatttggtggactaggaaccatgccatagaacagatagaatcccttcattcaaaccatcgatcattttatttatttattcctg |
40313490 |
T |
|
| Q |
501 |
cataacataacacccttc |
518 |
Q |
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|||||||||||||||||| |
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| T |
40313489 |
cataacataacacccttc |
40313472 |
T |
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