View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17498_high_15 (Length: 220)
Name: NF17498_high_15
Description: NF17498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17498_high_15 |
 | |
|
| [»] scaffold0110 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 44246917 - 44246726
Alignment:
| Q |
13 |
agaatatgaactcgctgcaaattaaaacatggatgttttattatctacctctaatgatgaaacacaaccttgaagcataattttctccaatggttcagat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44246917 |
agaatatgaactcgctgcaaattaaaacatggatgttttattatctacctctaatgatgaaacacaaccttgaagcataattttctccaatggttcagat |
44246818 |
T |
|
| Q |
113 |
attatttaattaaacaatataataataatggttgatggctcagttcatagaaaggattagaagagcatagtaagcagtaagtttgttatatg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44246817 |
attatttaattaaacaatataataataatggttgatggctcagttcatagaaaggattagaagagcatagtaagcagtaagtttgttatatg |
44246726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 42366467 - 42366276
Alignment:
| Q |
13 |
agaatatgaactcgctgcaaattaaaacatggatgttttattatctacctctaatgatgaaacacaaccttgaagcataattttctccaatggttcagat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42366467 |
agaatatgaactcgctgcaaattaaaacatggatgttttattatctacctctaatgatgaaacacaaccttgaagcataattttctccaatggttcaaat |
42366368 |
T |
|
| Q |
113 |
attatttaattaaacaatataataataatggttgatggctcagttcatagaaaggattagaagagcatagtaagcagtaagtttgttatatg |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42366367 |
attatttaattaaacaatataataataatggttgatggctcagttcatagaaatgattagaagagcatagtaagcagcaagtttgttatatg |
42366276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 50677686 - 50677875
Alignment:
| Q |
15 |
aatatgaactcgctgcaaattaaaacatggatgttttattatctacctctaatgatgaaacacaaccttgaagcataattttctccaatggttcagatat |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50677686 |
aatatgaactcgctgcaaattaaaacacggatgttttattatctacctctaatgatgaaacacaaccttgaagcataattttctccaatggttcagatat |
50677785 |
T |
|
| Q |
115 |
tatttaattaaacaatataataataatggttgatggctcagttcatagaaaggattagaagagcatagtaagcagtaagtttgttatatg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50677786 |
tatttaattaaacaatataataataatggttgatggctcatttcatagaaaggattagaagagcatagtaagtagtaagtttgttatatg |
50677875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 23416747 - 23416938
Alignment:
| Q |
13 |
agaatatgaactcgctgcaaattaaaacatggatgttttattatctacctctaatgatgaaacacaaccttgaagcataattttctccaatggttcagat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
23416747 |
agaatatgaactcgctgcaaattaaaacaaggatgttttattatctacctctaatgatgaaacacaaccttgaagcataattttctccgatggttcaaat |
23416846 |
T |
|
| Q |
113 |
attatttaattaaacaatataataataatggttgatggctcagttcatagaaaggattagaagagcatagtaagcagtaagtttgttatatg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23416847 |
attatttaattaaacaatataataataacagttgatggctcagtttatagaaaggattagaagagcatagtaagcagtaagtttgttatatg |
23416938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 38119 - 38299
Alignment:
| Q |
23 |
ctcgctgcaaattaaaacatggatgttttattatctacctctaatgatgaaacacaaccttgaagcataattttctccaatggttcagatattatttaat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
38119 |
ctcgctgcaaattaaaacatggatgttttattatctacctctaatgatgaaacacaaccttgaagcataattttctccaatgattcaaatattatttaat |
38218 |
T |
|
| Q |
123 |
taaacaatataataataatggttgatggctcagttcatagaaaggattagaagagcatagtaagcagtaagtttgttatat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38219 |
taaacaatataataataatggttgatggttcagttcatagaaaggattagaagagcatagtaagtagtaagtttgttatat |
38299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 27011772 - 27011581
Alignment:
| Q |
13 |
agaatatgaactcgctgcaaattaaaacatggatgttttattatctacctctaatgatgaaacacaaccttgaagcataattttctccaatggttcagat |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27011772 |
agaatatgaattcgctgcaaattaaaacatggatgttttattatctacctctaatgatgaaacacaac-ttgaagcataattttctccaatggttcagat |
27011674 |
T |
|
| Q |
113 |
attatttaattaaac-aatataataataatggttgatggctcagttcatagaaaggattagaagagcatagtaagcagtaagtttgttatatg |
204 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
27011673 |
attatttaattaaaccaatataataataatggttgatggctcagttcatagaaaggattagaagcgcatagtaaggagtaagtttgttatatg |
27011581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University