View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17498_high_7 (Length: 337)
Name: NF17498_high_7
Description: NF17498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17498_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 23984576 - 23984807
Alignment:
| Q |
1 |
agaaccacactacctattaacaccagaaatataggttcactttctcacaactatttaaagtataatcataagctatctgcttatttatcctacaagttgg |
100 |
Q |
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| T |
23984576 |
agaaccacactacctattaacaccataaatataggttcactttctcacaactattttaagtgtaatcataagctatctgcttatttatcctacaagttgg |
23984675 |
T |
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| Q |
101 |
tcacttaaagatgaatattttgttgtggcaaacatgggcttttgctctaattttatcttcatttatggcttctgctgctacagttgaacacactttcttg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23984676 |
tcacttcaagatgaatattttgttgtggcaaacatgggcttttgctctaattttatcttcatttatggcttctgctgctacagttgaacacactttcttg |
23984775 |
T |
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| Q |
201 |
gtaagattttaatgtgcttagcttagtgttga |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
23984776 |
gtaagattttaatgtgcttagcttagtgttga |
23984807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 23984823 - 23984885
Alignment:
| Q |
260 |
gtattgactagtcttacttacatgacatttaattcaatcaatctttcactttaattcaattct |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23984823 |
gtattgactagtcttacttacatgacatttaattcaatcaatctttcactttaactcaattct |
23984885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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