View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17498_high_9 (Length: 314)
Name: NF17498_high_9
Description: NF17498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17498_high_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 23984284 - 23984587
Alignment:
| Q |
9 |
caaagtccaagatgagggaagacatggcctgtctaataaggccaaaactatatcaaataaaagagggatgacgtattcatagtcaaaaaagtctgccatg |
108 |
Q |
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| T |
23984284 |
caaagtccaagatgagggaagacatggcctgtctaatgaggccaaaactatatcaaataaaagagggatgacgtattcacagtcaaaaaagtctgccatg |
23984383 |
T |
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| Q |
109 |
ataactatactcataagatacttacttataaggttttgagttgtaaatataattttatttgc-aaggggctgtgtagaccaaatcttcaattgatagata |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
23984384 |
ataactatactcataagatacttacttataaggttttgacttgtaaatataattttatttgcaaaggggctgtgtagaccaaatcttcaatt----gata |
23984479 |
T |
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| Q |
208 |
gaggcat-aaaaaataattaattcacaacaatttgcattattttatatcaatattattcaataagtaaactgaaagtgatcgatatgaaaacaacaagaa |
306 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23984480 |
gaggcataaaaaaaaaattaattcacaacaatttgcattattttatatcaatattattcaataagtaaactgaaagtgatcgatatgaaaacaacaagaa |
23984579 |
T |
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| Q |
307 |
ccacacta |
314 |
Q |
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|||||||| |
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| T |
23984580 |
ccacacta |
23984587 |
T |
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