View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17498_low_11 (Length: 295)
Name: NF17498_low_11
Description: NF17498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17498_low_11 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 35021700 - 35021976
Alignment:
| Q |
19 |
atgcaaaatctcaaactcactcacctccgtctcgaagaacccgacccatccataatccgttctcttctctacaccaacatctccctcttcctcacaatcc |
118 |
Q |
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| T |
35021700 |
atgcaaaatctcaaactcactcacctccgtctcgaagaacccgacccatccataatccgttctcttctctacaccaacatctccctcttcctcacaatcc |
35021799 |
T |
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| Q |
119 |
ccaactacctcgtcactcacatcgctactaaccgctccatcgcacgtgcatggatctacactcacgtgcttcccttctacccacgcgccaaaatcaccac |
218 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35021800 |
ccaactacctcgtcactcccatcgccactaaccgctccatcgcacgtgcatggatctacactcacgtgcttcccttctacccacgcgccaaaatcaccac |
35021899 |
T |
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| Q |
219 |
catctccgtcggtaacgccttcaccgacgtttaccctgaatccatcaacaacctccttcccgccatctccaacgttc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35021900 |
catctccgtcggtaacgccttcaccgacgtttaccctgaatccatcaacaacctccttcccgccatctccaacgttc |
35021976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 42811575 - 42811523
Alignment:
| Q |
243 |
cgacgtttaccctgaatccatcaacaacctccttcccgccatctccaacgttc |
295 |
Q |
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| T |
42811575 |
cgacgtttaccctgaatccatcaacaacctcctccccgccatctccaacgttc |
42811523 |
T |
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