View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17498_low_17 (Length: 240)
Name: NF17498_low_17
Description: NF17498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17498_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34895454 - 34895233
Alignment:
| Q |
1 |
cttctctataacctcttcaacagttttaaatttctacatacaaaaacaaaagcaaagcatcctctcttcacattctctttcttttccttgcaagtttcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34895454 |
cttctctataacctcttcaacagttttaaatttctacatacaaaaacaaaagcaaagcatcttctcttcacattctctttcttttccttgcaagtttcaa |
34895355 |
T |
|
| Q |
101 |
tctactattgtaactgtcggtgtannnnnnnngttaaaaaattcatctaagtttcgtatctttttagttttaatcnnnnnnncatttaatgtagtcagta |
200 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
34895354 |
tctactattgtaactgtcggtgtattttttttgttcaaaaattcatctaagtttcgtatctttttagttttaatcaaaaaaacatttaatgtagtcaata |
34895255 |
T |
|
| Q |
201 |
tgtgtcaagagttcatactttt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
34895254 |
tgtgtcaagagttcatactttt |
34895233 |
T |
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