View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17498_low_2 (Length: 511)

Name: NF17498_low_2
Description: NF17498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17498_low_2
NF17498_low_2
[»] chr4 (5 HSPs)
chr4 (18-499)||(36246170-36246651)
chr4 (88-131)||(52071519-52071562)
chr4 (85-130)||(27808566-27808611)
chr4 (55-124)||(31941926-31941995)
chr4 (55-124)||(32000885-32000954)
[»] chr2 (4 HSPs)
chr2 (38-156)||(2892226-2892344)
chr2 (314-442)||(2892440-2892568)
chr2 (30-156)||(37881267-37881393)
chr2 (354-442)||(37881832-37881920)
[»] chr3 (1 HSPs)
chr3 (82-130)||(44674752-44674800)
[»] chr8 (3 HSPs)
chr8 (82-125)||(39916909-39916952)
chr8 (49-132)||(11747427-11747510)
chr8 (91-131)||(7195699-7195739)
[»] chr1 (3 HSPs)
chr1 (92-135)||(27632581-27632624)
chr1 (88-131)||(45594286-45594329)
chr1 (92-130)||(17118247-17118285)
[»] chr5 (1 HSPs)
chr5 (88-125)||(19221386-19221423)


Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Complemental strand, 36246651 - 36246170
Alignment:
Q  18 caaaagatcaaaacgtggattatgtgttacaggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtct 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36246651 caaaagatcaaaacgtggattatgtgtcacaggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtct 36246552  T
Q  118 gttcttcctggtagcctagaagcaattgaagaccacctacacaattcaaaactatgtagtttagtcacaaaaatcatatctattattctgtcgtatatag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36246551 gttcttcctggtagcctagaagcaattgaagaccacctacacaattcaaaactatgtagtttagtcacaaaaatcatatctattattctgtcgtatatag 36246452  T
Q  218 tatcttaatcataatgaaaattaatatgtatttaactcactgttacacatgtagataaattgattaaaatttatatactgagagacttaattattattac 317  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36246451 tgtcttaatcataatgaaaattaatatgtatttaactcattgttacacatgtagataaattgattaaaatttatatactgagagacttaattattattac 36246352  T
Q  318 ttgttgccaagtatgctatgcagctgaattatggtttcttcttcttcaaaagagaatcgtcctctctttatatccggttggagatagtttgtccaacgta 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36246351 ttgttgccaagtatgctatgcagctgaattatggtttcttcttcttcaaaagagaatcgtcctctctttatatccggtcggagatagtttgtccaacgta 36246252  T
Q  418 gacgacaactctttccacatctttgtaatcctgcaactcaaacaaaaataaccaaacattttagtttaataatgttgatttt 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36246251 gacgacaactctttccacatctttgtaatcctgcaactcaaacaaaaataaccaaacattttagtttaataatgttgatttt 36246170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 52071519 - 52071562
Alignment:
Q  88 gtgttccaataattcttgatttcattgtctgttcttcctggtag 131  Q
    ||||||||||||||||||||||||||||||||||  ||||||||    
T  52071519 gtgttccaataattcttgatttcattgtctgttcgccctggtag 52071562  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 27808611 - 27808566
Alignment:
Q  85 tgagtgttccaataattcttgatttcattgtctgttcttcctggta 130  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||    
T  27808611 tgagtgttccaataattctttatctcattatctgttcttcctggta 27808566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 31941995 - 31941926
Alignment:
Q  55 attcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttc 124  Q
    ||||||||||||   ||||||||| | | ||| |||||||| || |||||||||||||||||||||||||    
T  31941995 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 31941926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 32000954 - 32000885
Alignment:
Q  55 attcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttc 124  Q
    ||||||||||||   ||||||||| | | ||| |||||||| || |||||||||||||||||||||||||    
T  32000954 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 32000885  T

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Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 2892226 - 2892344
Alignment:
Q  38 tatgtgttacaggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttcctggtagcctaga 137  Q
    |||||||||| ||||||||||||||||| || || |||||||||||||| ||||||||||| || || ||||||||||| || ||||||||||  | |||    
T  2892226 tatgtgttactggatcaattcccattctcaaaagccttttcctaatgtgtgtgttccaatagttttttatttcattgtccgtccttcctggtaatcgaga 2892325  T
Q  138 agcaattgaagaccaccta 156  Q
     ||||||| ||||||||||    
T  2892326 tgcaattgcagaccaccta 2892344  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 314 - 442
Target Start/End: Original strand, 2892440 - 2892568
Alignment:
Q  314 ttacttgttgccaagtatgctatgcagctgaattatggtttcttcttcttcaaaagagaatcgtcctctctttatatccggttggagatagtttgtccaa 413  Q
    ||||||||||||||| |||||||| |||||||| || || ||||| |||||||| || || || || |  |||||||| ||| |||||||||||||||||    
T  2892440 ttacttgttgccaagaatgctatgtagctgaataattgtctcttcctcttcaaatgaaaaccgaccacgttttatatctggtcggagatagtttgtccaa 2892539  T
Q  414 cgtagacgacaactctttccacatctttg 442  Q
    || ||||||||||| || |||||||||||    
T  2892540 cggagacgacaacttttgccacatctttg 2892568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 37881267 - 37881393
Alignment:
Q  30 acgtggattatgtgttacaggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttcctggt 129  Q
    ||||||| |||| || ||||||||||||||  |||  |  ||||||||||||||||| |||||||| || ||||| |||||||||||||||||||| |||    
T  37881267 acgtggagtatgagtaacaggatcaattccacttcgaagtagtcttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttccgggt 37881366  T
Q  130 agcctagaagcaattgaagaccaccta 156  Q
    |  |||| ||| || | ||||||||||    
T  37881367 aatctagcagctatagcagaccaccta 37881393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 442
Target Start/End: Original strand, 37881832 - 37881920
Alignment:
Q  354 tcttcttcttcaaaagagaatcgtcctctctttatatccggttggagatagtttgtccaacgtagacgacaactctttccacatctttg 442  Q
    |||||||||||||| ||||| | ||||||||| ||||| |||   | |||||||||||| || |||||||||||||| ||||| |||||    
T  37881832 tcttcttcttcaaaggagaaccttcctctcttgatatcaggtctcaaatagtttgtccatcgaagacgacaactcttaccacacctttg 37881920  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 44674800 - 44674752
Alignment:
Q  82 atgtgagtgttccaataattcttgatttcattgtctgttcttcctggta 130  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  44674800 atgtgagtgttccagtaattcttgatctcattatctgttcttcctggta 44674752  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 39916952 - 39916909
Alignment:
Q  82 atgtgagtgttccaataattcttgatttcattgtctgttcttcc 125  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  39916952 atgtgagtgttccaatagttcttgatctcattgtctgttcttcc 39916909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 11747510 - 11747427
Alignment:
Q  49 ggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttcctggtagc 132  Q
    |||||||||||||| | || ||| | |||| | | ||| ||||||||  |||||||||| |||||||| |||||||||||||||    
T  11747510 ggatcaattcccatgcatatgagacgtttctttaagtgtgtgttccataaattcttgatctcattgtcagttcttcctggtagc 11747427  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 7195739 - 7195699
Alignment:
Q  91 ttccaataattcttgatttcattgtctgttcttcctggtag 131  Q
    ||||| || |||||||||||||||||||||| |||||||||    
T  7195739 ttccagtagttcttgatttcattgtctgttcgtcctggtag 7195699  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 27632581 - 27632624
Alignment:
Q  92 tccaataattcttgatttcattgtctgttcttcctggtagccta 135  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||    
T  27632581 tccaatagttcttgatttcattgtctgttcttcctggaagccta 27632624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 45594286 - 45594329
Alignment:
Q  88 gtgttccaataattcttgatttcattgtctgttcttcctggtag 131  Q
    ||||||||||| ||||| || |||||||||||||||||||||||    
T  45594286 gtgttccaatagttcttaatctcattgtctgttcttcctggtag 45594329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 17118247 - 17118285
Alignment:
Q  92 tccaataattcttgatttcattgtctgttcttcctggta 130  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  17118247 tccagtaattctttatttcattgtctgttcttcctggta 17118285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 19221423 - 19221386
Alignment:
Q  88 gtgttccaataattcttgatttcattgtctgttcttcc 125  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  19221423 gtgttccaatgattctttatttcattgtctgttcttcc 19221386  T

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