View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17498_low_21 (Length: 212)
Name: NF17498_low_21
Description: NF17498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17498_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 3959887 - 3960034
Alignment:
| Q |
25 |
atatgcgacccaagtgtgaatacagtgattccgtatacatgagaaacccccaaaaacaaaagccaaaagatcagccaaccgcttaactactaccctcaac |
124 |
Q |
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| T |
3959887 |
atatgcggcctaagtgtgaatacagtgattccgtatacatgaggaacccccaaaaacaaaagccaaaagatcagccaaccacctaactactaccctcaac |
3959986 |
T |
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| Q |
125 |
cgatgcccctggaaactccagac-caaaaaacaaccgaaaaccactgc |
171 |
Q |
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| T |
3959987 |
cgatgcccctggacactcaagacaaaaaaaacaaccgaaaaccactgc |
3960034 |
T |
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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 3960310 - 3960414
Alignment:
| Q |
68 |
aaacccccaaaaacaaaagccaaaagatcagccaaccgcttaactactaccctcaaccgatgcccctggaaactccagacc-aaaaaacaaccgaaaacc |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||| ||||||||||| |
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| T |
3960310 |
aaacccccaaaaacaaaagccaaaagatcagccaaccgcttaactactaccctcaaccaatgcccctggacgctccagaccaaaaaaataaccgaaaacc |
3960409 |
T |
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| Q |
167 |
actgc |
171 |
Q |
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||||| |
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| T |
3960410 |
actgc |
3960414 |
T |
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