View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17498_low_4 (Length: 395)
Name: NF17498_low_4
Description: NF17498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17498_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 10 - 377
Target Start/End: Complemental strand, 32181698 - 32181331
Alignment:
| Q |
10 |
attatactcagctgttgtggtagtatttggaagataacatgaggattcagagagatattcaacatagttattttgaggtagttttggtaagaaattccac |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32181698 |
attatactcagctgttgtggcagtatttggaagataacatgaggattcagagagatattcaacatagttattttgaggtagttttggtaagaaattccac |
32181599 |
T |
|
| Q |
110 |
tctatcccacttcttccaaagtattggttttgaatgtgatgttcctcagaaacatcatggttactggttccttcagcttcatatgatgctagctcagaac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32181598 |
tctatcccacttcttccaaagtattggttttgaatgtgatgttcctcagaaacatcatggttactggttccttcagcttcatatgatgctagcttagaac |
32181499 |
T |
|
| Q |
210 |
tgttctctttgttgttactttctccttccatannnnnnnnacactacaaagctaaacaagggttaaaggtaagaacttgagtattgaaaaagtggtaaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32181498 |
tgttctctttgttgttactttctccttccatatttttttttcactactaagctaaacaagggttaaaggtaagaacttgagtattgaaaaagtggtaaag |
32181399 |
T |
|
| Q |
310 |
gaagaaactttcacttacccaaatgaagggaagtgcaaaatgcttacaagggtatcatggaatgtgta |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32181398 |
gaagaaactttcacttacccaaatgaagggaagtgcaaaatgcttaaaagggtatcatggaatgtgta |
32181331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University