View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17498_low_8 (Length: 318)
Name: NF17498_low_8
Description: NF17498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17498_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 29306222 - 29305974
Alignment:
| Q |
16 |
attgattaaaagtatacaagaaaagaagatgaatcagatgaagagattgaggacccaaagtgaagattcccacttctaaaaccatccaaactcataccac |
115 |
Q |
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| T |
29306222 |
attgattaaaagtatacaagaaaagaagatgaatcagatgaagagattgaggacccaaagcgaagattcccacttctaaaaccatccaaactcataccac |
29306123 |
T |
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| Q |
116 |
ttcgtgaaaggaagcgttctgtcgccctcgtcagcacggccgtgtactctccgaatatctccatcataatcgccaccattatcatgattctagcttagag |
215 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29306122 |
ttcgtgaaaggaagcgctctgtcgccctcgtcagcacggccgtgtactctccgaatatctccatcataatcgccaccattatcatgattctagcttagag |
29306023 |
T |
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| Q |
216 |
gttcttcttttctattttttagt-----tttgaaggtttagaacttctga |
260 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
29306022 |
gttcttc-tttctattttttagttttgatttgaaggtttagaacttctga |
29305974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 29297477 - 29297276
Alignment:
| Q |
16 |
attgattaaaagtatacaagaaaagaagatgaatcagatgaagagattgaggacccaaagtgaagattcccacttctaaaaccatccaaactcataccac |
115 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| ||| || |||||| ||||||||| | |||| |||||||||||||||||||| | |
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| T |
29297477 |
attgattaaaagtatacaagaaaagaagttgaatcagatgaagaggatgatgaaccaaagcgaagattcctatttcttaaaccatccaaactcatacccc |
29297378 |
T |
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| Q |
116 |
ttcgtgaaaggaagcgttctgtcgccctcgtcagcacggccgtgtactctccgaatatctccatcataatcgccaccattatcatgattctagcttagag |
215 |
Q |
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|||||||||||||||| || |||||||| |||||||| |||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||||| |
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| T |
29297377 |
ttcgtgaaaggaagcgctcagtcgcccttgtcagcacagccgtgtactctatgaatatctccgtcataaacgccaccattatcatgattcaagcttagag |
29297278 |
T |
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| Q |
216 |
gt |
217 |
Q |
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|| |
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| T |
29297277 |
gt |
29297276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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